data_5W7A # _model_server_result.job_id Gb84XrSP90G0xdaIeG5Sdw _model_server_result.datetime_utc '2024-11-27 04:04:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5W7A # _exptl.entry_id 5W7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W7A _cell.length_a 89.578 _cell.length_b 123.199 _cell.length_c 125.918 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 1 NAG 3 n C NAG 2 C 2 NAG C 3 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 40 1_555 A SG CYS 101 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 31 A CYS 43 1_555 A SG CYS 95 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 57 A CYS 69 1_555 A SG CYS 70 A CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 110 A CYS 122 1_555 B SG CYS 300 B CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 52 B CYS 205 1_555 B SG CYS 76 B CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 B SG CYS 95 B CYS 248 1_555 B SG CYS 175 B CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 222 B CYS 375 1_555 B SG CYS 306 B CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 B ND2 ASN 53 B ASN 206 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 B ND2 ASN 313 B ASN 466 1_555 G C1 NAG . B NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 B OD1 ASP 30 B ASP 183 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 B OD1 ASP 32 B ASP 185 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 B OD2 ASP 32 B ASP 185 1_555 E CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc4 B OD1 ASP 34 B ASP 187 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 B OD2 ASP 34 B ASP 187 1_555 E CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc6 B O TYR 36 B TYR 189 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc7 B OD2 ASP 51 B ASP 204 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 B OD1 ASP 51 B ASP 204 1_555 E CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc9 B OD2 ASP 51 B ASP 204 1_555 E CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc10 B O ASN 53 B ASN 206 1_555 E CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 B OD1 ASP 54 B ASP 207 1_555 D CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc12 B O ASP 56 B ASP 209 1_555 E CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc13 B O VAL 59 B VAL 212 1_555 E CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc14 B OD2 ASP 69 B ASP 222 1_555 F CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc15 B OD2 ASP 73 B ASP 226 1_555 F CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc16 B OD1 ASN 75 B ASN 228 1_555 F CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc17 B OD1 ASN 77 B ASN 230 1_555 F CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc18 B O ILE 79 B ILE 232 1_555 F CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc19 B OE2 GLU 91 B GLU 244 1_555 F CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W7A _atom_sites.fract_transf_matrix[1][1] 0.011163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA B 1 601 1 CA CA . E 4 CA B 1 602 2 CA CA . F 4 CA B 1 603 3 CA CA . G 5 NAG B 1 606 2 NAG NAG . H 6 PO4 B 1 607 1 PO4 PO4 . I 7 P6G B 1 608 1 P6G P6G . J 8 FTT B 1 609 1 FTT FTT . K 9 HOH A 1 201 77 HOH HOH . L 9 HOH B 1 701 19 HOH HOH . L 9 HOH B 2 702 28 HOH HOH . L 9 HOH B 3 703 55 HOH HOH . L 9 HOH B 4 704 3 HOH HOH . L 9 HOH B 5 705 42 HOH HOH . L 9 HOH B 6 706 80 HOH HOH . L 9 HOH B 7 707 98 HOH HOH . L 9 HOH B 8 708 49 HOH HOH . L 9 HOH B 9 709 11 HOH HOH . L 9 HOH B 10 710 85 HOH HOH . L 9 HOH B 11 711 34 HOH HOH . L 9 HOH B 12 712 9 HOH HOH . L 9 HOH B 13 713 36 HOH HOH . L 9 HOH B 14 714 109 HOH HOH . L 9 HOH B 15 715 21 HOH HOH . L 9 HOH B 16 716 16 HOH HOH . L 9 HOH B 17 717 84 HOH HOH . L 9 HOH B 18 718 78 HOH HOH . L 9 HOH B 19 719 71 HOH HOH . L 9 HOH B 20 720 14 HOH HOH . L 9 HOH B 21 721 60 HOH HOH . L 9 HOH B 22 722 1 HOH HOH . L 9 HOH B 23 723 63 HOH HOH . L 9 HOH B 24 724 90 HOH HOH . L 9 HOH B 25 725 54 HOH HOH . L 9 HOH B 26 726 66 HOH HOH . L 9 HOH B 27 727 44 HOH HOH . L 9 HOH B 28 728 100 HOH HOH . L 9 HOH B 29 729 88 HOH HOH . L 9 HOH B 30 730 23 HOH HOH . L 9 HOH B 31 731 7 HOH HOH . L 9 HOH B 32 732 61 HOH HOH . L 9 HOH B 33 733 33 HOH HOH . L 9 HOH B 34 734 8 HOH HOH . L 9 HOH B 35 735 45 HOH HOH . L 9 HOH B 36 736 65 HOH HOH . L 9 HOH B 37 737 70 HOH HOH . L 9 HOH B 38 738 52 HOH HOH . L 9 HOH B 39 739 108 HOH HOH . L 9 HOH B 40 740 38 HOH HOH . L 9 HOH B 41 741 25 HOH HOH . L 9 HOH B 42 742 6 HOH HOH . L 9 HOH B 43 743 74 HOH HOH . L 9 HOH B 44 744 12 HOH HOH . L 9 HOH B 45 745 2 HOH HOH . L 9 HOH B 46 746 30 HOH HOH . L 9 HOH B 47 747 73 HOH HOH . L 9 HOH B 48 748 110 HOH HOH . L 9 HOH B 49 749 48 HOH HOH . L 9 HOH B 50 750 15 HOH HOH . L 9 HOH B 51 751 107 HOH HOH . L 9 HOH B 52 752 18 HOH HOH . L 9 HOH B 53 753 37 HOH HOH . L 9 HOH B 54 754 96 HOH HOH . L 9 HOH B 55 755 29 HOH HOH . L 9 HOH B 56 756 59 HOH HOH . L 9 HOH B 57 757 22 HOH HOH . L 9 HOH B 58 758 62 HOH HOH . L 9 HOH B 59 759 67 HOH HOH . L 9 HOH B 60 760 20 HOH HOH . L 9 HOH B 61 761 17 HOH HOH . L 9 HOH B 62 762 32 HOH HOH . L 9 HOH B 63 763 102 HOH HOH . L 9 HOH B 64 764 4 HOH HOH . L 9 HOH B 65 765 99 HOH HOH . L 9 HOH B 66 766 5 HOH HOH . L 9 HOH B 67 767 69 HOH HOH . L 9 HOH B 68 768 35 HOH HOH . L 9 HOH B 69 769 68 HOH HOH . L 9 HOH B 70 770 43 HOH HOH . L 9 HOH B 71 771 13 HOH HOH . L 9 HOH B 72 772 106 HOH HOH . L 9 HOH B 73 773 26 HOH HOH . L 9 HOH B 74 774 10 HOH HOH . L 9 HOH B 75 775 76 HOH HOH . L 9 HOH B 76 776 75 HOH HOH . L 9 HOH B 77 777 104 HOH HOH . L 9 HOH B 78 778 41 HOH HOH . L 9 HOH B 79 779 27 HOH HOH . L 9 HOH B 80 780 57 HOH HOH . L 9 HOH B 81 781 39 HOH HOH . L 9 HOH B 82 782 31 HOH HOH . L 9 HOH B 83 783 83 HOH HOH . L 9 HOH B 84 784 64 HOH HOH . L 9 HOH B 85 785 24 HOH HOH . L 9 HOH B 86 786 111 HOH HOH . L 9 HOH B 87 787 40 HOH HOH . L 9 HOH B 88 788 86 HOH HOH . L 9 HOH B 89 789 89 HOH HOH . L 9 HOH B 90 790 79 HOH HOH . L 9 HOH B 91 791 87 HOH HOH . L 9 HOH B 92 792 56 HOH HOH . L 9 HOH B 93 793 53 HOH HOH . L 9 HOH B 94 794 51 HOH HOH . L 9 HOH B 95 795 50 HOH HOH . L 9 HOH B 96 796 58 HOH HOH . L 9 HOH B 97 797 81 HOH HOH . L 9 HOH B 98 798 101 HOH HOH . L 9 HOH B 99 799 72 HOH HOH . L 9 HOH B 100 800 46 HOH HOH . L 9 HOH B 101 801 97 HOH HOH . L 9 HOH B 102 802 105 HOH HOH . L 9 HOH B 103 803 103 HOH HOH . L 9 HOH B 104 804 94 HOH HOH . L 9 HOH B 105 805 91 HOH HOH . L 9 HOH B 106 806 95 HOH HOH . L 9 HOH B 107 807 93 HOH HOH . L 9 HOH B 108 808 47 HOH HOH . L 9 HOH B 109 809 92 HOH HOH . L 9 HOH B 110 810 82 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 48.089 _atom_site.Cartn_y 44.168 _atom_site.Cartn_z 59.542 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #