data_5W7R # _model_server_result.job_id FTJZmJgJ5yqPyLeU3ELyMQ _model_server_result.datetime_utc '2024-10-18 16:21:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5W7R # _exptl.entry_id 5W7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.486 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3E,7aR,12aS)-3-[(1H-imidazol-4-yl)methylidene]-6,12-dimethoxy-7a-(2-methylbut-3-en-2-yl)-7a,12-dihydro-1H,5H-imidazo[1 ',2':1,2]pyrido[2,3-b]indole-2,5(3H)-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W7R _cell.length_a 162.878 _cell.length_b 162.878 _cell.length_c 90.04 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 162.878 162.878 90.04 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H25 N5 O4' _chem_comp.formula_weight 447.486 _chem_comp.id 9Z7 _chem_comp.mon_nstd_flag . _chem_comp.name "(3E,7aR,12aS)-3-[(1H-imidazol-4-yl)methylidene]-6,12-dimethoxy-7a-(2-methylbut-3-en-2-yl)-7a,12-dihydro-1H,5H-imidazo[1 ',2':1,2]pyrido[2,3-b]indole-2,5(3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms oxaline # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 O21 9Z7 sing 1 n n C9 C8 9Z7 sing 2 n n O19 C18 9Z7 doub 3 n n O21 C20 9Z7 sing 4 n n N30 C29 9Z7 doub 5 n y N30 C26 9Z7 sing 6 n y C29 N28 9Z7 sing 7 n y C20 C18 9Z7 sing 8 n n C20 C23 9Z7 doub 9 n n C25 C26 9Z7 sing 10 n n C25 C24 9Z7 doub 11 e n C18 N17 9Z7 sing 12 n n C26 C27 9Z7 doub 13 n y C10 C8 9Z7 sing 14 n n N28 C27 9Z7 sing 15 n y C23 C7 9Z7 sing 16 n n C8 C11 9Z7 sing 17 n n C8 C7 9Z7 sing 18 n n N17 C24 9Z7 sing 19 n n N17 C13 9Z7 sing 20 n n C24 C31 9Z7 sing 21 n n C11 C12 9Z7 doub 22 n n C7 C13 9Z7 sing 23 n n C7 C6 9Z7 sing 24 n n C13 N33 9Z7 sing 25 n n C13 N14 9Z7 sing 26 n n C31 O32 9Z7 doub 27 n n C31 N33 9Z7 sing 28 n n C6 C5 9Z7 doub 29 n y C6 C1 9Z7 sing 30 n y N14 O15 9Z7 sing 31 n n N14 C1 9Z7 sing 32 n n C5 C4 9Z7 sing 33 n y C16 O15 9Z7 sing 34 n n C1 C2 9Z7 doub 35 n y C4 C3 9Z7 doub 36 n y C2 C3 9Z7 sing 37 n y C2 H1 9Z7 sing 38 n n C10 H2 9Z7 sing 39 n n C10 H3 9Z7 sing 40 n n C10 H4 9Z7 sing 41 n n C11 H5 9Z7 sing 42 n n C12 H6 9Z7 sing 43 n n C12 H7 9Z7 sing 44 n n C16 H8 9Z7 sing 45 n n C16 H9 9Z7 sing 46 n n C16 H10 9Z7 sing 47 n n C22 H12 9Z7 sing 48 n n C22 H13 9Z7 sing 49 n n C22 H14 9Z7 sing 50 n n C23 H15 9Z7 sing 51 n n C25 H17 9Z7 sing 52 n n C27 H18 9Z7 sing 53 n n C29 H19 9Z7 sing 54 n n C3 H20 9Z7 sing 55 n n C4 H21 9Z7 sing 56 n n C5 H22 9Z7 sing 57 n n C9 H23 9Z7 sing 58 n n C9 H24 9Z7 sing 59 n n C9 H25 9Z7 sing 60 n n N28 H26 9Z7 sing 61 n n N33 H28 9Z7 sing 62 n n # _atom_sites.entry_id 5W7R _atom_sites.fract_transf_matrix[1][1] 0.00614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9Z7 A 1 501 1 9Z7 OXA . C 3 SAH A 1 502 1 SAH SAH . D 4 HOH A 1 601 10 HOH HOH . D 4 HOH A 2 602 9 HOH HOH . D 4 HOH A 3 603 2 HOH HOH . D 4 HOH A 4 604 3 HOH HOH . D 4 HOH A 5 605 7 HOH HOH . D 4 HOH A 6 606 5 HOH HOH . D 4 HOH A 7 607 1 HOH HOH . D 4 HOH A 8 608 4 HOH HOH . D 4 HOH A 9 609 8 HOH HOH . D 4 HOH A 10 610 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9Z7 . . . B 2 17.576 135.034 31.691 1 73.57 ? C1 9Z7 501 A 1 HETATM 2 C C2 9Z7 . . . B 2 17.133 134.968 33.007 1 62.24 ? C2 9Z7 501 A 1 HETATM 3 C C10 9Z7 . . . B 2 17.146 138.149 28.381 1 69.95 ? C10 9Z7 501 A 1 HETATM 4 C C11 9Z7 . . . B 2 19.383 137.972 29.337 1 75.31 ? C11 9Z7 501 A 1 HETATM 5 C C12 9Z7 . . . B 2 19.183 138.608 30.472 1 73.66 ? C12 9Z7 501 A 1 HETATM 6 C C13 9Z7 . . . B 2 19.022 134.853 29.878 1 83.68 ? C13 9Z7 501 A 1 HETATM 7 C C16 9Z7 . . . B 2 18.141 131.756 31.339 1 69.67 ? C16 9Z7 501 A 1 HETATM 8 C C18 9Z7 . . . B 2 18.419 133.136 28.228 1 83.58 ? C18 9Z7 501 A 1 HETATM 9 C C20 9Z7 . . . B 2 17.093 133.811 28.189 1 79.71 ? C20 9Z7 501 A 1 HETATM 10 C C22 9Z7 . . . B 2 15.327 133.507 26.498 1 69.58 ? C22 9Z7 501 A 1 HETATM 11 C C23 9Z7 . . . B 2 16.91 135.106 28.563 1 78.07 ? C23 9Z7 501 A 1 HETATM 12 C C24 9Z7 . . . B 2 20.747 133.529 28.992 1 81.34 ? C24 9Z7 501 A 1 HETATM 13 C C25 9Z7 . . . B 2 21.459 132.468 28.204 1 75.24 ? C25 9Z7 501 A 1 HETATM 14 C C26 9Z7 . . . B 2 22.93 132.205 28.236 1 75.63 ? C26 9Z7 501 A 1 HETATM 15 C C27 9Z7 . . . B 2 23.909 133.134 28.516 1 71 ? C27 9Z7 501 A 1 HETATM 16 C C29 9Z7 . . . B 2 24.78 131.118 28.11 1 69.92 ? C29 9Z7 501 A 1 HETATM 17 C C3 9Z7 . . . B 2 16.27 135.967 33.442 1 60.73 ? C3 9Z7 501 A 1 HETATM 18 C C31 9Z7 . . . B 2 21.252 134.568 29.948 1 81.15 ? C31 9Z7 501 A 1 HETATM 19 C C4 9Z7 . . . B 2 15.893 136.991 32.577 1 64.6 ? C4 9Z7 501 A 1 HETATM 20 C C5 9Z7 . . . B 2 16.362 137.038 31.266 1 70.75 ? C5 9Z7 501 A 1 HETATM 21 C C6 9Z7 . . . B 2 17.231 136.047 30.822 1 74.71 ? C6 9Z7 501 A 1 HETATM 22 C C7 9Z7 . . . B 2 17.892 135.866 29.453 1 83.43 ? C7 9Z7 501 A 1 HETATM 23 C C8 9Z7 . . . B 2 18.287 137.17 28.674 1 77.81 ? C8 9Z7 501 A 1 HETATM 24 C C9 9Z7 . . . B 2 18.844 136.8 27.303 1 76.47 ? C9 9Z7 501 A 1 HETATM 25 N N14 9Z7 . . . B 2 18.477 134.163 31.074 1 83.17 ? N14 9Z7 501 A 1 HETATM 26 N N17 9Z7 . . . B 2 19.412 133.764 28.94 1 83.96 ? N17 9Z7 501 A 1 HETATM 27 N N28 9Z7 . . . B 2 25.061 132.413 28.433 1 71.65 ? N28 9Z7 501 A 1 HETATM 28 N N30 9Z7 . . . B 2 23.433 130.98 27.982 1 79.7 ? N30 9Z7 501 A 1 HETATM 29 N N33 9Z7 . . . B 2 20.284 135.381 30.444 1 76.34 ? N33 9Z7 501 A 1 HETATM 30 O O15 9Z7 . . . B 2 18.835 133.005 31.529 1 81.35 ? O15 9Z7 501 A 1 HETATM 31 O O19 9Z7 . . . B 2 18.63 132.082 27.63 1 85.63 ? O19 9Z7 501 A 1 HETATM 32 O O21 9Z7 . . . B 2 15.931 133.084 27.704 1 74.92 ? O21 9Z7 501 A 1 HETATM 33 O O32 9Z7 . . . B 2 22.489 134.709 30.286 1 78.58 ? O32 9Z7 501 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #