data_5W7S # _model_server_result.job_id w2yhHiHXzX8-OxLN5680rw _model_server_result.datetime_utc '2024-11-22 06:07:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5W7S # _exptl.entry_id 5W7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3E,7aR,12aS)-6-hydroxy-3-[(1H-imidazol-4-yl)methylidene]-12-methoxy-7a-(2-methylbut-3-en-2-yl)-7a,12-dihydro-1H,5H-imidazo[1',2':1,2]pyrido[2,3-b]indole-2,5(3H)-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W7S _cell.length_a 162.986 _cell.length_b 162.986 _cell.length_c 91.277 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 162.986 162.986 91.277 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H23 N5 O4' _chem_comp.formula_weight 433.46 _chem_comp.id 9Z1 _chem_comp.mon_nstd_flag . _chem_comp.name "(3E,7aR,12aS)-6-hydroxy-3-[(1H-imidazol-4-yl)methylidene]-12-methoxy-7a-(2-methylbut-3-en-2-yl)-7a,12-dihydro-1H,5H-imidazo[1',2':1,2]pyrido[2,3-b]indole-2,5(3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Meleagrin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C18 9Z1 doub 1 n n O21 C20 9Z1 sing 2 n n C11 C8 9Z1 sing 3 n n C12 C8 9Z1 sing 4 n n C18 C20 9Z1 sing 5 n n C18 N17 9Z1 sing 6 n n C20 C22 9Z1 doub 7 n n C24 C25 9Z1 sing 8 n n C24 C23 9Z1 doub 9 e n C25 C26 9Z1 doub 10 n y C25 N29 9Z1 sing 11 n y C26 N27 9Z1 sing 12 n y N29 C28 9Z1 doub 13 n y N27 C28 9Z1 sing 14 n y C8 C7 9Z1 sing 15 n n C8 C9 9Z1 sing 16 n n C22 C7 9Z1 sing 17 n n N17 C23 9Z1 sing 18 n n N17 C13 9Z1 sing 19 n n C23 C30 9Z1 sing 20 n n C7 C13 9Z1 sing 21 n n C7 C6 9Z1 sing 22 n n C9 C10 9Z1 doub 23 n n C13 N32 9Z1 sing 24 n n C13 N14 9Z1 sing 25 n n C30 O31 9Z1 doub 26 n n C30 N32 9Z1 sing 27 n n C6 C5 9Z1 doub 28 n y C6 C1 9Z1 sing 29 n y N14 O15 9Z1 sing 30 n n N14 C1 9Z1 sing 31 n n O15 C16 9Z1 sing 32 n n C5 C4 9Z1 sing 33 n y C1 C2 9Z1 doub 34 n y C4 C3 9Z1 doub 35 n y C2 C3 9Z1 sing 36 n y C11 H1 9Z1 sing 37 n n C11 H2 9Z1 sing 38 n n C11 H3 9Z1 sing 39 n n C10 H4 9Z1 sing 40 n n C10 H5 9Z1 sing 41 n n C12 H6 9Z1 sing 42 n n C12 H7 9Z1 sing 43 n n C12 H8 9Z1 sing 44 n n C16 H9 9Z1 sing 45 n n C16 H10 9Z1 sing 46 n n C16 H11 9Z1 sing 47 n n C2 H12 9Z1 sing 48 n n C22 H13 9Z1 sing 49 n n C24 H14 9Z1 sing 50 n n C26 H15 9Z1 sing 51 n n C28 H16 9Z1 sing 52 n n C3 H17 9Z1 sing 53 n n C4 H18 9Z1 sing 54 n n C5 H19 9Z1 sing 55 n n C9 H20 9Z1 sing 56 n n N27 H21 9Z1 sing 57 n n N32 H23 9Z1 sing 58 n n O21 H24 9Z1 sing 59 n n # _atom_sites.entry_id 5W7S _atom_sites.fract_transf_matrix[1][1] 0.006135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9Z1 A 1 501 1 9Z1 MLG . C 3 SFG A 1 502 1 SFG SFG . D 4 HOH A 1 601 6 HOH HOH . D 4 HOH A 2 602 5 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 1 HOH HOH . D 4 HOH A 5 605 4 HOH HOH . D 4 HOH A 6 606 2 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 9Z1 . . . B 2 16.703 137.699 27.948 1 108.08 ? C11 9Z1 501 A 1 HETATM 2 C C10 9Z1 . . . B 2 18.961 138.589 30.713 1 98.78 ? C10 9Z1 501 A 1 HETATM 3 C C12 9Z1 . . . B 2 19.101 137.21 28.062 1 99.33 ? C12 9Z1 501 A 1 HETATM 4 C C16 9Z1 . . . B 2 18.866 132.475 32.558 1 107.51 ? C16 9Z1 501 A 1 HETATM 5 C C1 9Z1 . . . B 2 17.401 135.2 31.903 1 100.44 ? C1 9Z1 501 A 1 HETATM 6 C C13 9Z1 . . . B 2 18.671 135.066 29.962 1 117.7 ? C13 9Z1 501 A 1 HETATM 7 C C18 9Z1 . . . B 2 17.969 133.56 28.134 1 112.92 ? C18 9Z1 501 A 1 HETATM 8 C C2 9Z1 . . . B 2 17.063 135.119 33.25 1 88.33 ? C2 9Z1 501 A 1 HETATM 9 C C20 9Z1 . . . B 2 16.618 134.181 28.23 1 109.95 ? C20 9Z1 501 A 1 HETATM 10 C C22 9Z1 . . . B 2 16.401 135.314 28.933 1 102.14 ? C22 9Z1 501 A 1 HETATM 11 C C23 9Z1 . . . B 2 20.289 133.703 29.085 1 118.56 ? C23 9Z1 501 A 1 HETATM 12 C C24 9Z1 . . . B 2 20.981 132.651 28.28 1 113.51 ? C24 9Z1 501 A 1 HETATM 13 C C25 9Z1 . . . B 2 22.419 132.282 28.436 1 109.17 ? C25 9Z1 501 A 1 HETATM 14 C C26 9Z1 . . . B 2 22.806 130.963 28.522 1 112.36 ? C26 9Z1 501 A 1 HETATM 15 C C28 9Z1 . . . B 2 24.539 132.338 28.662 1 104.65 ? C28 9Z1 501 A 1 HETATM 16 C C3 9Z1 . . . B 2 16.247 136.104 33.789 1 83.67 ? C3 9Z1 501 A 1 HETATM 17 C C30 9Z1 . . . B 2 20.815 134.541 30.079 1 116.11 ? C30 9Z1 501 A 1 HETATM 18 C C4 9Z1 . . . B 2 15.801 137.145 32.982 1 89.1 ? C4 9Z1 501 A 1 HETATM 19 C C5 9Z1 . . . B 2 16.141 137.206 31.633 1 91.39 ? C5 9Z1 501 A 1 HETATM 20 C C6 9Z1 . . . B 2 16.969 136.223 31.102 1 96.73 ? C6 9Z1 501 A 1 HETATM 21 C C7 9Z1 . . . B 2 17.497 136.058 29.686 1 107.71 ? C7 9Z1 501 A 1 HETATM 22 C C8 9Z1 . . . B 2 17.841 137.362 28.907 1 105.06 ? C8 9Z1 501 A 1 HETATM 23 C C9 9Z1 . . . B 2 18.061 138.594 29.75 1 98.96 ? C9 9Z1 501 A 1 HETATM 24 N N14 9Z1 . . . B 2 18.192 134.334 31.137 1 114.81 ? N14 9Z1 501 A 1 HETATM 25 N N17 9Z1 . . . B 2 18.98 134.034 28.955 1 119.18 ? N17 9Z1 501 A 1 HETATM 26 N N27 9Z1 . . . B 2 24.153 131.032 28.66 1 106.97 ? N27 9Z1 501 A 1 HETATM 27 N N29 9Z1 . . . B 2 23.452 133.138 28.524 1 110.32 ? N29 9Z1 501 A 1 HETATM 28 N N32 9Z1 . . . B 2 19.943 135.431 30.602 1 119.01 ? N32 9Z1 501 A 1 HETATM 29 O O15 9Z1 . . . B 2 18.427 133.088 31.337 1 113.5 ? O15 9Z1 501 A 1 HETATM 30 O O19 9Z1 . . . B 2 18.184 132.693 27.297 1 102.14 ? O19 9Z1 501 A 1 HETATM 31 O O21 9Z1 . . . B 2 15.562 133.648 27.607 1 103.98 ? O21 9Z1 501 A 1 HETATM 32 O O31 9Z1 . . . B 2 22.041 134.513 30.469 1 107.4 ? O31 9Z1 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #