data_5W7S # _model_server_result.job_id 4mnTtVAlL1pcA6TpeLB5Hg _model_server_result.datetime_utc '2024-11-22 05:57:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5W7S # _exptl.entry_id 5W7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W7S _cell.length_a 162.986 _cell.length_b 162.986 _cell.length_c 91.277 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 162.986 162.986 91.277 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 349 n n N HN1 SFG sing 350 n n N HN2 SFG sing 351 n n CA C SFG sing 352 n n CA CB SFG sing 353 n n CA HA SFG sing 354 n n C O SFG doub 355 n n C OXT SFG sing 356 n n OXT HXT SFG sing 357 n n CB CG SFG sing 358 n n CB HB1 SFG sing 359 n n CB HB2 SFG sing 360 n n CG CD SFG sing 361 n n CG HG1 SFG sing 362 n n CG HG2 SFG sing 363 n n CD NE SFG sing 364 n n CD C5' SFG sing 365 n n CD HD SFG sing 366 n n NE HNE1 SFG sing 367 n n NE HNE2 SFG sing 368 n n C5' C4' SFG sing 369 n n C5' "H5'1" SFG sing 370 n n C5' "H5'2" SFG sing 371 n n C4' O4' SFG sing 372 n n C4' C3' SFG sing 373 n n C4' H4' SFG sing 374 n n O4' C1' SFG sing 375 n n C3' O3' SFG sing 376 n n C3' C2' SFG sing 377 n n C3' H3' SFG sing 378 n n O3' HO3' SFG sing 379 n n C2' O2' SFG sing 380 n n C2' C1' SFG sing 381 n n C2' H2' SFG sing 382 n n O2' HO2' SFG sing 383 n n C1' N9 SFG sing 384 n n C1' H1' SFG sing 385 n n N9 C8 SFG sing 386 n y N9 C4 SFG sing 387 n y C8 N7 SFG doub 388 n y C8 H8 SFG sing 389 n n N7 C5 SFG sing 390 n y C5 C6 SFG sing 391 n y C5 C4 SFG doub 392 n y C6 N6 SFG sing 393 n n C6 N1 SFG doub 394 n y N6 HN61 SFG sing 395 n n N6 HN62 SFG sing 396 n n N1 C2 SFG sing 397 n y C2 N3 SFG doub 398 n y C2 H2 SFG sing 399 n n N3 C4 SFG sing 400 n y # _atom_sites.entry_id 5W7S _atom_sites.fract_transf_matrix[1][1] 0.006135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9Z1 A 1 501 1 9Z1 MLG . C 3 SFG A 1 502 1 SFG SFG . D 4 HOH A 1 601 6 HOH HOH . D 4 HOH A 2 602 5 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 1 HOH HOH . D 4 HOH A 5 605 4 HOH HOH . D 4 HOH A 6 606 2 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . C 3 15.418 131.993 20.425 1 86.99 ? N SFG 502 A 1 HETATM 2 C CA SFG . . . C 3 16.455 132.964 20.753 1 90.64 ? CA SFG 502 A 1 HETATM 3 C C SFG . . . C 3 17.582 132.27 21.501 1 98.25 ? C SFG 502 A 1 HETATM 4 O O SFG . . . C 3 17.536 131.031 21.695 1 102.25 ? O SFG 502 A 1 HETATM 5 O OXT SFG . . . C 3 18.553 132.941 21.929 1 102.35 ? OXT SFG 502 A 1 HETATM 6 C CB SFG . . . C 3 15.922 134.127 21.607 1 88.12 ? CB SFG 502 A 1 HETATM 7 C CG SFG . . . C 3 15.488 133.693 23.012 1 83.85 ? CG SFG 502 A 1 HETATM 8 C CD SFG . . . C 3 15.309 134.913 23.921 1 80.13 ? CD SFG 502 A 1 HETATM 9 N NE SFG . . . C 3 16.014 134.713 25.166 1 85.23 ? NE SFG 502 A 1 HETATM 10 C C5' SFG . . . C 3 13.842 135.12 24.269 1 80.59 ? C5' SFG 502 A 1 HETATM 11 C C4' SFG . . . C 3 13.127 135.772 23.056 1 85.85 ? C4' SFG 502 A 1 HETATM 12 O O4' SFG . . . C 3 11.824 135.759 23.208 1 85.32 ? O4' SFG 502 A 1 HETATM 13 C C3' SFG . . . C 3 13.558 137.249 22.946 1 82.8 ? C3' SFG 502 A 1 HETATM 14 O O3' SFG . . . C 3 14.17 137.467 21.747 1 75.07 ? O3' SFG 502 A 1 HETATM 15 C C2' SFG . . . C 3 12.23 138.023 23.105 1 83.07 ? C2' SFG 502 A 1 HETATM 16 O O2' SFG . . . C 3 12.256 139.325 22.357 1 82.28 ? O2' SFG 502 A 1 HETATM 17 C C1' SFG . . . C 3 11.321 137.183 22.662 1 83.63 ? C1' SFG 502 A 1 HETATM 18 N N9 SFG . . . C 3 10.037 137.53 23.208 1 87.14 ? N9 SFG 502 A 1 HETATM 19 C C8 SFG . . . C 3 9.751 138.021 24.419 1 87.68 ? C8 SFG 502 A 1 HETATM 20 N N7 SFG . . . C 3 8.428 138.221 24.499 1 86.94 ? N7 SFG 502 A 1 HETATM 21 C C5 SFG . . . C 3 7.894 137.865 23.325 1 88.53 ? C5 SFG 502 A 1 HETATM 22 C C6 SFG . . . C 3 6.59 137.885 22.875 1 86.81 ? C6 SFG 502 A 1 HETATM 23 N N6 SFG . . . C 3 5.325 138.278 23.475 1 77.18 ? N6 SFG 502 A 1 HETATM 24 N N1 SFG . . . C 3 6.322 137.465 21.647 1 88.11 ? N1 SFG 502 A 1 HETATM 25 C C2 SFG . . . C 3 7.329 137.028 20.844 1 89.51 ? C2 SFG 502 A 1 HETATM 26 N N3 SFG . . . C 3 8.612 137.015 21.281 1 86.03 ? N3 SFG 502 A 1 HETATM 27 C C4 SFG . . . C 3 8.887 137.437 22.526 1 87.29 ? C4 SFG 502 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #