data_5W81 # _model_server_result.job_id Wq84eEyxRrzL3EAFjb9rrg _model_server_result.datetime_utc '2024-11-21 13:54:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1502}' # _entry.id 5W81 # _exptl.entry_id 5W81 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W81 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 464 A SER 464 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc2 A OE1 GLN 492 A GLN 492 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc3 A OG SER 1252 A SER 1252 1_555 E MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A OE1 GLN 1292 A GLN 1292 1_555 E MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 B O3G ATP . A ATP 1501 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc6 B O2B ATP . A ATP 1501 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc7 C O2G ATP . A ATP 1502 1_555 E MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc8 C O2B ATP . A ATP 1502 1_555 E MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5W81 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1501 1 ATP ATP . C 2 ATP A 1 1502 2 ATP ATP . D 3 MG A 1 1503 1 MG MG . E 3 MG A 1 1504 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 141.857 132.645 126.23 1 157.08 ? PG ATP 1502 A 1 HETATM 2 O O1G ATP . . . C 2 141.113 131.914 125.141 1 157.86 ? O1G ATP 1502 A 1 HETATM 3 O O2G ATP . . . C 2 140.997 133.63 126.989 1 149.05 ? O2G ATP 1502 A 1 HETATM 4 O O3G ATP . . . C 2 142.724 131.756 127.09 1 157.98 ? O3G ATP 1502 A 1 HETATM 5 P PB ATP . . . C 2 142.493 134.773 124.52 1 152.9 ? PB ATP 1502 A 1 HETATM 6 O O1B ATP . . . C 2 141.641 134.25 123.389 1 149.44 ? O1B ATP 1502 A 1 HETATM 7 O O2B ATP . . . C 2 141.954 135.872 125.399 1 150.8 ? O2B ATP 1502 A 1 HETATM 8 O O3B ATP . . . C 2 142.941 133.545 125.451 1 152.55 ? O3B ATP 1502 A 1 HETATM 9 P PA ATP . . . C 2 144.56 136.64 124.354 1 172.11 ? PA ATP 1502 A 1 HETATM 10 O O1A ATP . . . C 2 143.737 137.753 123.749 1 167.32 ? O1A ATP 1502 A 1 HETATM 11 O O2A ATP . . . C 2 144.777 136.584 125.848 1 169.53 ? O2A ATP 1502 A 1 HETATM 12 O O3A ATP . . . C 2 143.905 135.239 123.908 1 159.02 ? O3A ATP 1502 A 1 HETATM 13 O O5' ATP . . . C 2 145.993 136.631 123.622 1 168.51 ? O5' ATP 1502 A 1 HETATM 14 C C5' ATP . . . C 2 146.751 135.43 123.509 1 165.21 ? C5' ATP 1502 A 1 HETATM 15 C C4' ATP . . . C 2 148.228 135.731 123.25 1 164.95 ? C4' ATP 1502 A 1 HETATM 16 O O4' ATP . . . C 2 148.471 137.136 123.353 1 168.46 ? O4' ATP 1502 A 1 HETATM 17 C C3' ATP . . . C 2 149.177 135.029 124.215 1 168.84 ? C3' ATP 1502 A 1 HETATM 18 O O3' ATP . . . C 2 150.027 134.127 123.498 1 176.14 ? O3' ATP 1502 A 1 HETATM 19 C C2' ATP . . . C 2 149.966 136.125 124.909 1 172.27 ? C2' ATP 1502 A 1 HETATM 20 O O2' ATP . . . C 2 151.382 135.955 124.779 1 173.55 ? O2' ATP 1502 A 1 HETATM 21 C C1' ATP . . . C 2 149.539 137.43 124.254 1 179.69 ? C1' ATP 1502 A 1 HETATM 22 N N9 ATP . . . C 2 149.092 138.396 125.288 1 199.48 ? N9 ATP 1502 A 1 HETATM 23 C C8 ATP . . . C 2 147.904 138.378 125.921 1 203.32 ? C8 ATP 1502 A 1 HETATM 24 N N7 ATP . . . C 2 147.817 139.396 126.815 1 205.89 ? N7 ATP 1502 A 1 HETATM 25 C C5 ATP . . . C 2 148.966 140.078 126.762 1 201.19 ? C5 ATP 1502 A 1 HETATM 26 C C6 ATP . . . C 2 149.523 141.267 127.44 1 204.42 ? C6 ATP 1502 A 1 HETATM 27 N N6 ATP . . . C 2 148.805 141.92 128.379 1 207.62 ? N6 ATP 1502 A 1 HETATM 28 N N1 ATP . . . C 2 150.774 141.658 127.098 1 218.12 ? N1 ATP 1502 A 1 HETATM 29 C C2 ATP . . . C 2 151.502 141.008 126.161 1 216.55 ? C2 ATP 1502 A 1 HETATM 30 N N3 ATP . . . C 2 151.043 139.921 125.505 1 215.31 ? N3 ATP 1502 A 1 HETATM 31 C C4 ATP . . . C 2 149.809 139.416 125.755 1 202.85 ? C4 ATP 1502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #