data_5W86 # _model_server_result.job_id 1NRCAx9HYdvhloVB3kmbyA _model_server_result.datetime_utc '2024-10-18 04:24:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":4000}' # _entry.id 5W86 # _exptl.entry_id 5W86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(benzylamino)-6-({4-[(1-methylpiperidin-4-yl)carbamoyl]phenyl}amino)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.06 _cell.angle_gamma 90 _cell.entry_id 5W86 _cell.length_a 56.983 _cell.length_b 112.297 _cell.length_c 97.119 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 166 A ASP 979 1_555 A N PTR 167 A PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C PTR 167 A PTR 980 1_555 A N PTR 168 A PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C PTR 168 A PTR 981 1_555 A N VAL 169 A VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 B C ASP 166 B ASP 979 1_555 B N PTR 167 B PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 B C PTR 167 B PTR 980 1_555 B N PTR 168 B PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C PTR 168 B PTR 981 1_555 B N VAL 169 B VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 C C ASP 166 C ASP 979 1_555 C N PTR 167 C PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale8 C C PTR 167 C PTR 980 1_555 C N PTR 168 C PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 C C PTR 168 C PTR 981 1_555 C N VAL 169 C VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 D C ASP 166 D ASP 979 1_555 D N PTR 167 D PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 D C PTR 167 D PTR 980 1_555 D N PTR 168 D PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 D C PTR 168 D PTR 981 1_555 D N VAL 169 D VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C26 H30 N6 O2' _chem_comp.formula_weight 458.555 _chem_comp.id 9YV _chem_comp.mon_nstd_flag . _chem_comp.name 4-(benzylamino)-6-({4-[(1-methylpiperidin-4-yl)carbamoyl]phenyl}amino)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W86 _atom_sites.fract_transf_matrix[1][1] 0.017549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000018 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 9YV A 1 4000 4000 9YV 9YV . F 2 9YV B 1 4000 4000 9YV 9YV . G 2 9YV C 1 4000 4000 9YV 9YV . H 2 9YV D 1 4000 4000 9YV 9YV . I 3 HOH A 1 4101 4101 HOH HOH . I 3 HOH A 2 4102 4102 HOH HOH . I 3 HOH A 3 4103 4103 HOH HOH . I 3 HOH A 4 4104 4104 HOH HOH . I 3 HOH A 5 4105 4105 HOH HOH . I 3 HOH A 6 4106 4106 HOH HOH . I 3 HOH A 7 4107 4107 HOH HOH . I 3 HOH A 8 4108 4108 HOH HOH . I 3 HOH A 9 4109 4109 HOH HOH . I 3 HOH A 10 4110 4110 HOH HOH . I 3 HOH A 11 4111 4111 HOH HOH . I 3 HOH A 12 4112 4112 HOH HOH . I 3 HOH A 13 4113 4113 HOH HOH . I 3 HOH A 14 4114 4114 HOH HOH . I 3 HOH A 15 4115 4115 HOH HOH . I 3 HOH A 16 4116 4116 HOH HOH . I 3 HOH A 17 4117 4117 HOH HOH . I 3 HOH A 18 4118 4118 HOH HOH . I 3 HOH A 19 4119 4119 HOH HOH . I 3 HOH A 20 4120 4120 HOH HOH . I 3 HOH A 21 4121 4121 HOH HOH . I 3 HOH A 22 4122 4122 HOH HOH . I 3 HOH A 23 4123 4123 HOH HOH . I 3 HOH A 24 4124 4124 HOH HOH . I 3 HOH A 25 4125 4125 HOH HOH . I 3 HOH A 26 4126 4126 HOH HOH . I 3 HOH A 27 4127 4127 HOH HOH . I 3 HOH A 28 4128 4128 HOH HOH . I 3 HOH A 29 4129 4129 HOH HOH . I 3 HOH A 30 4130 4130 HOH HOH . I 3 HOH A 31 4131 4131 HOH HOH . I 3 HOH A 32 4132 4132 HOH HOH . I 3 HOH A 33 4133 4133 HOH HOH . I 3 HOH A 34 4134 4134 HOH HOH . I 3 HOH A 35 4135 4135 HOH HOH . I 3 HOH A 36 4136 4136 HOH HOH . I 3 HOH A 37 4137 4137 HOH HOH . J 3 HOH B 1 4101 4101 HOH HOH . J 3 HOH B 2 4102 4102 HOH HOH . J 3 HOH B 3 4103 4103 HOH HOH . J 3 HOH B 4 4104 4104 HOH HOH . J 3 HOH B 5 4105 4105 HOH HOH . J 3 HOH B 6 4106 4106 HOH HOH . J 3 HOH B 7 4107 4107 HOH HOH . J 3 HOH B 8 4108 4108 HOH HOH . J 3 HOH B 9 4109 4109 HOH HOH . J 3 HOH B 10 4110 4110 HOH HOH . J 3 HOH B 11 4111 4111 HOH HOH . J 3 HOH B 12 4112 4112 HOH HOH . J 3 HOH B 13 4113 4113 HOH HOH . J 3 HOH B 14 4114 4114 HOH HOH . J 3 HOH B 15 4115 4115 HOH HOH . J 3 HOH B 16 4116 4116 HOH HOH . J 3 HOH B 17 4117 4117 HOH HOH . J 3 HOH B 18 4118 4118 HOH HOH . J 3 HOH B 19 4119 4119 HOH HOH . J 3 HOH B 20 4120 4120 HOH HOH . J 3 HOH B 21 4121 4121 HOH HOH . J 3 HOH B 22 4122 4122 HOH HOH . J 3 HOH B 23 4123 4123 HOH HOH . J 3 HOH B 24 4124 4124 HOH HOH . J 3 HOH B 25 4125 4125 HOH HOH . J 3 HOH B 26 4126 4126 HOH HOH . J 3 HOH B 27 4127 4127 HOH HOH . J 3 HOH B 28 4128 4128 HOH HOH . J 3 HOH B 29 4129 4129 HOH HOH . J 3 HOH B 30 4130 4130 HOH HOH . J 3 HOH B 31 4131 4131 HOH HOH . J 3 HOH B 32 4132 4132 HOH HOH . J 3 HOH B 33 4133 4133 HOH HOH . J 3 HOH B 34 4134 4134 HOH HOH . K 3 HOH C 1 4101 4101 HOH HOH . K 3 HOH C 2 4102 4102 HOH HOH . K 3 HOH C 3 4103 4103 HOH HOH . K 3 HOH C 4 4104 4104 HOH HOH . K 3 HOH C 5 4105 4105 HOH HOH . K 3 HOH C 6 4106 4106 HOH HOH . K 3 HOH C 7 4107 4107 HOH HOH . K 3 HOH C 8 4108 4108 HOH HOH . K 3 HOH C 9 4109 4109 HOH HOH . K 3 HOH C 10 4110 4110 HOH HOH . K 3 HOH C 11 4111 4111 HOH HOH . K 3 HOH C 12 4112 4112 HOH HOH . K 3 HOH C 13 4113 4113 HOH HOH . K 3 HOH C 14 4114 4114 HOH HOH . K 3 HOH C 15 4115 4115 HOH HOH . K 3 HOH C 16 4116 4116 HOH HOH . K 3 HOH C 17 4117 4117 HOH HOH . K 3 HOH C 18 4118 4118 HOH HOH . K 3 HOH C 19 4119 4119 HOH HOH . K 3 HOH C 20 4120 4120 HOH HOH . K 3 HOH C 21 4121 4121 HOH HOH . K 3 HOH C 22 4122 4122 HOH HOH . K 3 HOH C 23 4123 4123 HOH HOH . K 3 HOH C 24 4124 4124 HOH HOH . K 3 HOH C 25 4125 4125 HOH HOH . K 3 HOH C 26 4126 4126 HOH HOH . K 3 HOH C 27 4127 4127 HOH HOH . K 3 HOH C 28 4128 4128 HOH HOH . K 3 HOH C 29 4129 4129 HOH HOH . K 3 HOH C 30 4130 4130 HOH HOH . K 3 HOH C 31 4131 4131 HOH HOH . K 3 HOH C 32 4132 4132 HOH HOH . K 3 HOH C 33 4133 4133 HOH HOH . K 3 HOH C 34 4134 4134 HOH HOH . K 3 HOH C 35 4135 4135 HOH HOH . K 3 HOH C 36 4136 4136 HOH HOH . K 3 HOH C 37 4137 4137 HOH HOH . K 3 HOH C 38 4138 4138 HOH HOH . K 3 HOH C 39 4139 4139 HOH HOH . K 3 HOH C 40 4140 4140 HOH HOH . L 3 HOH D 1 4101 4101 HOH HOH . L 3 HOH D 2 4102 4102 HOH HOH . L 3 HOH D 3 4103 4103 HOH HOH . L 3 HOH D 4 4104 4104 HOH HOH . L 3 HOH D 5 4105 4105 HOH HOH . L 3 HOH D 6 4106 4106 HOH HOH . L 3 HOH D 7 4107 4107 HOH HOH . L 3 HOH D 8 4108 4108 HOH HOH . L 3 HOH D 9 4109 4109 HOH HOH . L 3 HOH D 10 4110 4110 HOH HOH . L 3 HOH D 11 4111 4111 HOH HOH . L 3 HOH D 12 4112 4112 HOH HOH . L 3 HOH D 13 4113 4113 HOH HOH . L 3 HOH D 14 4114 4121 HOH HOH . L 3 HOH D 15 4115 4114 HOH HOH . L 3 HOH D 16 4116 4115 HOH HOH . L 3 HOH D 17 4117 4116 HOH HOH . L 3 HOH D 18 4118 4117 HOH HOH . L 3 HOH D 19 4119 4119 HOH HOH . L 3 HOH D 20 4120 4120 HOH HOH . L 3 HOH D 21 4121 4122 HOH HOH . L 3 HOH D 22 4122 4123 HOH HOH . L 3 HOH D 23 4123 4124 HOH HOH . L 3 HOH D 24 4124 4125 HOH HOH . L 3 HOH D 25 4125 4126 HOH HOH . L 3 HOH D 26 4126 4127 HOH HOH . L 3 HOH D 27 4127 4128 HOH HOH . L 3 HOH D 28 4128 4129 HOH HOH . L 3 HOH D 29 4129 4130 HOH HOH . L 3 HOH D 30 4130 4131 HOH HOH . L 3 HOH D 31 4131 4132 HOH HOH . L 3 HOH D 32 4132 4133 HOH HOH . L 3 HOH D 33 4133 4118 HOH HOH . L 3 HOH D 34 4134 4134 HOH HOH . L 3 HOH D 35 4135 4135 HOH HOH . L 3 HOH D 36 4136 4136 HOH HOH . L 3 HOH D 37 4137 4137 HOH HOH . L 3 HOH D 38 4138 4138 HOH HOH . L 3 HOH D 39 4139 4139 HOH HOH . L 3 HOH D 40 4140 4140 HOH HOH . L 3 HOH D 41 4141 4141 HOH HOH . L 3 HOH D 42 4142 4142 HOH HOH . L 3 HOH D 43 4143 4143 HOH HOH . L 3 HOH D 44 4144 4144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 9YV . . . F 2 39.722 -19.944 36.62 1 21.19 ? C13 9YV 4000 B 1 HETATM 2 C C18 9YV . . . F 2 37.71 -19.125 33.484 1 34.56 ? C18 9YV 4000 B 1 HETATM 3 C C16 9YV . . . F 2 39.412 -19.334 35.287 1 26.02 ? C16 9YV 4000 B 1 HETATM 4 C C15 9YV . . . F 2 39.446 -21.768 38.176 1 18.88 ? C15 9YV 4000 B 1 HETATM 5 C C20 9YV . . . F 2 37.198 -17.696 33.739 1 34.46 ? C20 9YV 4000 B 1 HETATM 6 C C21 9YV . . . F 2 36.407 -17.181 32.547 1 36.37 ? C21 9YV 4000 B 1 HETATM 7 C C23 9YV . . . F 2 35.817 -19.381 31.843 1 40.89 ? C23 9YV 4000 B 1 HETATM 8 C C24 9YV . . . F 2 36.583 -20.034 32.991 1 36.76 ? C24 9YV 4000 B 1 HETATM 9 C C11 9YV . . . F 2 40.683 -19.818 38.829 1 20.62 ? C11 9YV 4000 B 1 HETATM 10 C C12 9YV . . . F 2 40.466 -19.263 37.58 1 20.22 ? C12 9YV 4000 B 1 HETATM 11 C C34 9YV . . . F 2 37.622 -26.5 38.968 1 25.73 ? C34 9YV 4000 B 1 HETATM 12 C C33 9YV . . . F 2 38.438 -27.19 38.081 1 29.29 ? C33 9YV 4000 B 1 HETATM 13 C C1 9YV . . . F 2 38.095 -24.168 42.812 1 14.71 ? C1 9YV 4000 B 1 HETATM 14 C C2 9YV . . . F 2 39.194 -23.425 43.246 1 10.42 ? C2 9YV 4000 B 1 HETATM 15 N N3 9YV . . . F 2 39.861 -22.557 42.482 1 13.67 ? N3 9YV 4000 B 1 HETATM 16 C C4 9YV . . . F 2 39.429 -22.37 41.228 1 15.3 ? C4 9YV 4000 B 1 HETATM 17 C C5 9YV . . . F 2 38.316 -23.036 40.703 1 13.98 ? C5 9YV 4000 B 1 HETATM 18 C C6 9YV . . . F 2 37.641 -23.971 41.488 1 15.65 ? C6 9YV 4000 B 1 HETATM 19 N N7 9YV . . . F 2 36.583 -24.703 40.967 1 15.33 ? N7 9YV 4000 B 1 HETATM 20 C C8 9YV . . . F 2 37.559 -25.232 43.715 1 15.56 ? C8 9YV 4000 B 1 HETATM 21 N N9 9YV . . . F 2 40.238 -21.531 40.477 1 17.2 ? N9 9YV 4000 B 1 HETATM 22 C C10 9YV . . . F 2 40.151 -21.065 39.145 1 19.03 ? C10 9YV 4000 B 1 HETATM 23 C C14 9YV . . . F 2 39.23 -21.209 36.931 1 20.92 ? C14 9YV 4000 B 1 HETATM 24 N N17 9YV . . . F 2 38.244 -19.698 34.721 1 32.24 ? N17 9YV 4000 B 1 HETATM 25 O O19 9YV . . . F 2 40.189 -18.545 34.763 1 25.31 ? O19 9YV 4000 B 1 HETATM 26 N N22 9YV . . . F 2 35.293 -18.073 32.236 1 41.72 ? N22 9YV 4000 B 1 HETATM 27 C C25 9YV . . . F 2 34.466 -17.51 31.169 1 44.68 ? C25 9YV 4000 B 1 HETATM 28 N N26 9YV . . . F 2 37.247 -26.398 43.182 1 18.36 ? N26 9YV 4000 B 1 HETATM 29 O O27 9YV . . . F 2 37.489 -25.032 44.907 1 16.29 ? O27 9YV 4000 B 1 HETATM 30 C C28 9YV . . . F 2 36.149 -24.558 39.585 1 19.37 ? C28 9YV 4000 B 1 HETATM 31 C C29 9YV . . . F 2 37.045 -25.286 38.611 1 23.24 ? C29 9YV 4000 B 1 HETATM 32 C C30 9YV . . . F 2 37.308 -24.773 37.344 1 24.07 ? C30 9YV 4000 B 1 HETATM 33 C C31 9YV . . . F 2 38.131 -25.46 36.458 1 29.25 ? C31 9YV 4000 B 1 HETATM 34 C C32 9YV . . . F 2 38.701 -26.669 36.828 1 29.65 ? C32 9YV 4000 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #