data_5W8B
#
_model_server_result.job_id            AaeWWdkkqjAHsNECVJ3DGA 
_model_server_result.datetime_utc      '2024-11-22 22:09:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5W8B 
#
_exptl.entry_id    5W8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.1 
_cell.angle_gamma         90 
_cell.entry_id            5W8B 
_cell.length_a            42.268 
_cell.length_b            41.252 
_cell.length_c            72.096 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 91 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc2 A NE2 HIS 93 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 A ND1 HIS 116 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 F O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 182 n n 
C1 C2 GOL sing 183 n n 
C1 H11 GOL sing 184 n n 
C1 H12 GOL sing 185 n n 
O1 HO1 GOL sing 186 n n 
C2 O2 GOL sing 187 n n 
C2 C3 GOL sing 188 n n 
C2 H2 GOL sing 189 n n 
O2 HO2 GOL sing 190 n n 
C3 O3 GOL sing 191 n n 
C3 H31 GOL sing 192 n n 
C3 H32 GOL sing 193 n n 
O3 HO3 GOL sing 194 n n 
#
_atom_sites.entry_id                     5W8B 
_atom_sites.fract_transf_matrix[1][1]    0.023659 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005941 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024241 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014301 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 262 ZN ZN . 
C 3 A9J A 1 302 1 A9J PFS . 
D 4 GOL A 1 303 400 GOL GOL . 
E 5 A57 A 1 304 1 A57 DRG . 
F 6 HOH A 1 401 141 HOH HOH . 
F 6 HOH A 2 402 116 HOH HOH . 
F 6 HOH A 3 403 84 HOH HOH . 
F 6 HOH A 4 404 36 HOH HOH . 
F 6 HOH A 5 405 137 HOH HOH . 
F 6 HOH A 6 406 157 HOH HOH . 
F 6 HOH A 7 407 86 HOH HOH . 
F 6 HOH A 8 408 91 HOH HOH . 
F 6 HOH A 9 409 44 HOH HOH . 
F 6 HOH A 10 410 153 HOH HOH . 
F 6 HOH A 11 411 126 HOH HOH . 
F 6 HOH A 12 412 57 HOH HOH . 
F 6 HOH A 13 413 98 HOH HOH . 
F 6 HOH A 14 414 136 HOH HOH . 
F 6 HOH A 15 415 3 HOH HOH . 
F 6 HOH A 16 416 62 HOH HOH . 
F 6 HOH A 17 417 73 HOH HOH . 
F 6 HOH A 18 418 9 HOH HOH . 
F 6 HOH A 19 419 1 HOH HOH . 
F 6 HOH A 20 420 45 HOH HOH . 
F 6 HOH A 21 421 102 HOH HOH . 
F 6 HOH A 22 422 71 HOH HOH . 
F 6 HOH A 23 423 47 HOH HOH . 
F 6 HOH A 24 424 58 HOH HOH . 
F 6 HOH A 25 425 121 HOH HOH . 
F 6 HOH A 26 426 99 HOH HOH . 
F 6 HOH A 27 427 7 HOH HOH . 
F 6 HOH A 28 428 109 HOH HOH . 
F 6 HOH A 29 429 39 HOH HOH . 
F 6 HOH A 30 430 72 HOH HOH . 
F 6 HOH A 31 431 131 HOH HOH . 
F 6 HOH A 32 432 118 HOH HOH . 
F 6 HOH A 33 433 35 HOH HOH . 
F 6 HOH A 34 434 43 HOH HOH . 
F 6 HOH A 35 435 32 HOH HOH . 
F 6 HOH A 36 436 27 HOH HOH . 
F 6 HOH A 37 437 50 HOH HOH . 
F 6 HOH A 38 438 101 HOH HOH . 
F 6 HOH A 39 439 93 HOH HOH . 
F 6 HOH A 40 440 81 HOH HOH . 
F 6 HOH A 41 441 42 HOH HOH . 
F 6 HOH A 42 442 92 HOH HOH . 
F 6 HOH A 43 443 10 HOH HOH . 
F 6 HOH A 44 444 49 HOH HOH . 
F 6 HOH A 45 445 103 HOH HOH . 
F 6 HOH A 46 446 139 HOH HOH . 
F 6 HOH A 47 447 33 HOH HOH . 
F 6 HOH A 48 448 63 HOH HOH . 
F 6 HOH A 49 449 16 HOH HOH . 
F 6 HOH A 50 450 134 HOH HOH . 
F 6 HOH A 51 451 83 HOH HOH . 
F 6 HOH A 52 452 133 HOH HOH . 
F 6 HOH A 53 453 147 HOH HOH . 
F 6 HOH A 54 454 13 HOH HOH . 
F 6 HOH A 55 455 19 HOH HOH . 
F 6 HOH A 56 456 75 HOH HOH . 
F 6 HOH A 57 457 17 HOH HOH . 
F 6 HOH A 58 458 40 HOH HOH . 
F 6 HOH A 59 459 60 HOH HOH . 
F 6 HOH A 60 460 61 HOH HOH . 
F 6 HOH A 61 461 14 HOH HOH . 
F 6 HOH A 62 462 30 HOH HOH . 
F 6 HOH A 63 463 144 HOH HOH . 
F 6 HOH A 64 464 6 HOH HOH . 
F 6 HOH A 65 465 18 HOH HOH . 
F 6 HOH A 66 466 23 HOH HOH . 
F 6 HOH A 67 467 51 HOH HOH . 
F 6 HOH A 68 468 113 HOH HOH . 
F 6 HOH A 69 469 46 HOH HOH . 
F 6 HOH A 70 470 89 HOH HOH . 
F 6 HOH A 71 471 59 HOH HOH . 
F 6 HOH A 72 472 38 HOH HOH . 
F 6 HOH A 73 473 78 HOH HOH . 
F 6 HOH A 74 474 119 HOH HOH . 
F 6 HOH A 75 475 29 HOH HOH . 
F 6 HOH A 76 476 56 HOH HOH . 
F 6 HOH A 77 477 138 HOH HOH . 
F 6 HOH A 78 478 20 HOH HOH . 
F 6 HOH A 79 479 15 HOH HOH . 
F 6 HOH A 80 480 31 HOH HOH . 
F 6 HOH A 81 481 4 HOH HOH . 
F 6 HOH A 82 482 155 HOH HOH . 
F 6 HOH A 83 483 65 HOH HOH . 
F 6 HOH A 84 484 34 HOH HOH . 
F 6 HOH A 85 485 28 HOH HOH . 
F 6 HOH A 86 486 55 HOH HOH . 
F 6 HOH A 87 487 54 HOH HOH . 
F 6 HOH A 88 488 87 HOH HOH . 
F 6 HOH A 89 489 85 HOH HOH . 
F 6 HOH A 90 490 88 HOH HOH . 
F 6 HOH A 91 491 151 HOH HOH . 
F 6 HOH A 92 492 80 HOH HOH . 
F 6 HOH A 93 493 117 HOH HOH . 
F 6 HOH A 94 494 22 HOH HOH . 
F 6 HOH A 95 495 66 HOH HOH . 
F 6 HOH A 96 496 143 HOH HOH . 
F 6 HOH A 97 497 100 HOH HOH . 
F 6 HOH A 98 498 11 HOH HOH . 
F 6 HOH A 99 499 67 HOH HOH . 
F 6 HOH A 100 500 90 HOH HOH . 
F 6 HOH A 101 501 94 HOH HOH . 
F 6 HOH A 102 502 37 HOH HOH . 
F 6 HOH A 103 503 140 HOH HOH . 
F 6 HOH A 104 504 25 HOH HOH . 
F 6 HOH A 105 505 21 HOH HOH . 
F 6 HOH A 106 506 68 HOH HOH . 
F 6 HOH A 107 507 123 HOH HOH . 
F 6 HOH A 108 508 105 HOH HOH . 
F 6 HOH A 109 509 148 HOH HOH . 
F 6 HOH A 110 510 53 HOH HOH . 
F 6 HOH A 111 511 52 HOH HOH . 
F 6 HOH A 112 512 64 HOH HOH . 
F 6 HOH A 113 513 12 HOH HOH . 
F 6 HOH A 114 514 79 HOH HOH . 
F 6 HOH A 115 515 95 HOH HOH . 
F 6 HOH A 116 516 122 HOH HOH . 
F 6 HOH A 117 517 142 HOH HOH . 
F 6 HOH A 118 518 111 HOH HOH . 
F 6 HOH A 119 519 108 HOH HOH . 
F 6 HOH A 120 520 24 HOH HOH . 
F 6 HOH A 121 521 41 HOH HOH . 
F 6 HOH A 122 522 115 HOH HOH . 
F 6 HOH A 123 523 48 HOH HOH . 
F 6 HOH A 124 524 135 HOH HOH . 
F 6 HOH A 125 525 110 HOH HOH . 
F 6 HOH A 126 526 156 HOH HOH . 
F 6 HOH A 127 527 96 HOH HOH . 
F 6 HOH A 128 528 82 HOH HOH . 
F 6 HOH A 129 529 149 HOH HOH . 
F 6 HOH A 130 530 97 HOH HOH . 
F 6 HOH A 131 531 150 HOH HOH . 
F 6 HOH A 132 532 146 HOH HOH . 
F 6 HOH A 133 533 127 HOH HOH . 
F 6 HOH A 134 534 106 HOH HOH . 
F 6 HOH A 135 535 112 HOH HOH . 
F 6 HOH A 136 536 145 HOH HOH . 
F 6 HOH A 137 537 77 HOH HOH . 
F 6 HOH A 138 538 107 HOH HOH . 
F 6 HOH A 139 539 69 HOH HOH . 
F 6 HOH A 140 540 129 HOH HOH . 
F 6 HOH A 141 541 70 HOH HOH . 
F 6 HOH A 142 542 74 HOH HOH . 
F 6 HOH A 143 543 5 HOH HOH . 
F 6 HOH A 144 544 125 HOH HOH . 
F 6 HOH A 145 545 152 HOH HOH . 
F 6 HOH A 146 546 114 HOH HOH . 
F 6 HOH A 147 547 154 HOH HOH . 
F 6 HOH A 148 548 104 HOH HOH . 
F 6 HOH A 149 549 132 HOH HOH . 
F 6 HOH A 150 550 124 HOH HOH . 
F 6 HOH A 151 551 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 1.326 -10.96 15.119 1 32.02 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 4 1.928 -10.679 16.371 1 26.71 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 4 2.232 -11.784 14.216 1 30.9 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 4 2.356 -11.133 12.967 1 20.1 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 4 1.6 -13.157 13.991 1 37.33 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 4 2.228 -14.134 14.794 1 47 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#