data_5W8C # _model_server_result.job_id BXiy-f2XAaovL2j5vpltSw _model_server_result.datetime_utc '2024-11-08 08:54:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5W8C # _exptl.entry_id 5W8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W8C _cell.length_a 90.742 _cell.length_b 90.742 _cell.length_c 98.393 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5W8C _atom_sites.fract_transf_matrix[1][1] 0.01102 _atom_sites.fract_transf_matrix[1][2] 0.006363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IVC A 1 301 300 IVC IVC . C 3 MTA A 1 302 301 MTA MTA . D 4 GOL A 1 303 302 GOL GOL . E 5 CL A 1 304 401 CL CL . F 5 CL A 1 305 402 CL CL . G 6 HOH A 1 401 321 HOH HOH . G 6 HOH A 2 402 164 HOH HOH . G 6 HOH A 3 403 115 HOH HOH . G 6 HOH A 4 404 7 HOH HOH . G 6 HOH A 5 405 253 HOH HOH . G 6 HOH A 6 406 417 HOH HOH . G 6 HOH A 7 407 303 HOH HOH . G 6 HOH A 8 408 47 HOH HOH . G 6 HOH A 9 409 212 HOH HOH . G 6 HOH A 10 410 276 HOH HOH . G 6 HOH A 11 411 411 HOH HOH . G 6 HOH A 12 412 68 HOH HOH . G 6 HOH A 13 413 83 HOH HOH . G 6 HOH A 14 414 139 HOH HOH . G 6 HOH A 15 415 147 HOH HOH . G 6 HOH A 16 416 5 HOH HOH . G 6 HOH A 17 417 98 HOH HOH . G 6 HOH A 18 418 221 HOH HOH . G 6 HOH A 19 419 106 HOH HOH . G 6 HOH A 20 420 4 HOH HOH . G 6 HOH A 21 421 112 HOH HOH . G 6 HOH A 22 422 86 HOH HOH . G 6 HOH A 23 423 19 HOH HOH . G 6 HOH A 24 424 171 HOH HOH . G 6 HOH A 25 425 60 HOH HOH . G 6 HOH A 26 426 91 HOH HOH . G 6 HOH A 27 427 74 HOH HOH . G 6 HOH A 28 428 36 HOH HOH . G 6 HOH A 29 429 72 HOH HOH . G 6 HOH A 30 430 37 HOH HOH . G 6 HOH A 31 431 113 HOH HOH . G 6 HOH A 32 432 229 HOH HOH . G 6 HOH A 33 433 254 HOH HOH . G 6 HOH A 34 434 283 HOH HOH . G 6 HOH A 35 435 53 HOH HOH . G 6 HOH A 36 436 150 HOH HOH . G 6 HOH A 37 437 236 HOH HOH . G 6 HOH A 38 438 61 HOH HOH . G 6 HOH A 39 439 155 HOH HOH . G 6 HOH A 40 440 10 HOH HOH . G 6 HOH A 41 441 141 HOH HOH . G 6 HOH A 42 442 26 HOH HOH . G 6 HOH A 43 443 196 HOH HOH . G 6 HOH A 44 444 28 HOH HOH . G 6 HOH A 45 445 48 HOH HOH . G 6 HOH A 46 446 55 HOH HOH . G 6 HOH A 47 447 185 HOH HOH . G 6 HOH A 48 448 57 HOH HOH . G 6 HOH A 49 449 80 HOH HOH . G 6 HOH A 50 450 197 HOH HOH . G 6 HOH A 51 451 39 HOH HOH . G 6 HOH A 52 452 12 HOH HOH . G 6 HOH A 53 453 124 HOH HOH . G 6 HOH A 54 454 87 HOH HOH . G 6 HOH A 55 455 144 HOH HOH . G 6 HOH A 56 456 41 HOH HOH . G 6 HOH A 57 457 44 HOH HOH . G 6 HOH A 58 458 206 HOH HOH . G 6 HOH A 59 459 94 HOH HOH . G 6 HOH A 60 460 38 HOH HOH . G 6 HOH A 61 461 27 HOH HOH . G 6 HOH A 62 462 21 HOH HOH . G 6 HOH A 63 463 293 HOH HOH . G 6 HOH A 64 464 122 HOH HOH . G 6 HOH A 65 465 184 HOH HOH . G 6 HOH A 66 466 178 HOH HOH . G 6 HOH A 67 467 9 HOH HOH . G 6 HOH A 68 468 169 HOH HOH . G 6 HOH A 69 469 109 HOH HOH . G 6 HOH A 70 470 128 HOH HOH . G 6 HOH A 71 471 123 HOH HOH . G 6 HOH A 72 472 42 HOH HOH . G 6 HOH A 73 473 13 HOH HOH . G 6 HOH A 74 474 412 HOH HOH . G 6 HOH A 75 475 62 HOH HOH . G 6 HOH A 76 476 32 HOH HOH . G 6 HOH A 77 477 100 HOH HOH . G 6 HOH A 78 478 262 HOH HOH . G 6 HOH A 79 479 270 HOH HOH . G 6 HOH A 80 480 89 HOH HOH . G 6 HOH A 81 481 29 HOH HOH . G 6 HOH A 82 482 77 HOH HOH . G 6 HOH A 83 483 143 HOH HOH . G 6 HOH A 84 484 224 HOH HOH . G 6 HOH A 85 485 199 HOH HOH . G 6 HOH A 86 486 367 HOH HOH . G 6 HOH A 87 487 103 HOH HOH . G 6 HOH A 88 488 67 HOH HOH . G 6 HOH A 89 489 264 HOH HOH . G 6 HOH A 90 490 22 HOH HOH . G 6 HOH A 91 491 52 HOH HOH . G 6 HOH A 92 492 173 HOH HOH . G 6 HOH A 93 493 6 HOH HOH . G 6 HOH A 94 494 45 HOH HOH . G 6 HOH A 95 495 251 HOH HOH . G 6 HOH A 96 496 118 HOH HOH . G 6 HOH A 97 497 85 HOH HOH . G 6 HOH A 98 498 34 HOH HOH . G 6 HOH A 99 499 198 HOH HOH . G 6 HOH A 100 500 181 HOH HOH . G 6 HOH A 101 501 188 HOH HOH . G 6 HOH A 102 502 76 HOH HOH . G 6 HOH A 103 503 202 HOH HOH . G 6 HOH A 104 504 95 HOH HOH . G 6 HOH A 105 505 130 HOH HOH . G 6 HOH A 106 506 129 HOH HOH . G 6 HOH A 107 507 63 HOH HOH . G 6 HOH A 108 508 159 HOH HOH . G 6 HOH A 109 509 207 HOH HOH . G 6 HOH A 110 510 161 HOH HOH . G 6 HOH A 111 511 146 HOH HOH . G 6 HOH A 112 512 220 HOH HOH . G 6 HOH A 113 513 136 HOH HOH . G 6 HOH A 114 514 104 HOH HOH . G 6 HOH A 115 515 119 HOH HOH . G 6 HOH A 116 516 105 HOH HOH . G 6 HOH A 117 517 249 HOH HOH . G 6 HOH A 118 518 240 HOH HOH . G 6 HOH A 119 519 187 HOH HOH . G 6 HOH A 120 520 300 HOH HOH . G 6 HOH A 121 521 120 HOH HOH . G 6 HOH A 122 522 211 HOH HOH . G 6 HOH A 123 523 114 HOH HOH . G 6 HOH A 124 524 3 HOH HOH . G 6 HOH A 125 525 232 HOH HOH . G 6 HOH A 126 526 308 HOH HOH . G 6 HOH A 127 527 265 HOH HOH . G 6 HOH A 128 528 291 HOH HOH . G 6 HOH A 129 529 82 HOH HOH . G 6 HOH A 130 530 190 HOH HOH . G 6 HOH A 131 531 310 HOH HOH . G 6 HOH A 132 532 246 HOH HOH . G 6 HOH A 133 533 101 HOH HOH . G 6 HOH A 134 534 127 HOH HOH . G 6 HOH A 135 535 158 HOH HOH . G 6 HOH A 136 536 79 HOH HOH . G 6 HOH A 137 537 328 HOH HOH . G 6 HOH A 138 538 31 HOH HOH . G 6 HOH A 139 539 252 HOH HOH . G 6 HOH A 140 540 152 HOH HOH . G 6 HOH A 141 541 84 HOH HOH . G 6 HOH A 142 542 135 HOH HOH . G 6 HOH A 143 543 242 HOH HOH . G 6 HOH A 144 544 78 HOH HOH . G 6 HOH A 145 545 167 HOH HOH . G 6 HOH A 146 546 285 HOH HOH . G 6 HOH A 147 547 192 HOH HOH . G 6 HOH A 148 548 134 HOH HOH . G 6 HOH A 149 549 177 HOH HOH . G 6 HOH A 150 550 274 HOH HOH . G 6 HOH A 151 551 73 HOH HOH . G 6 HOH A 152 552 223 HOH HOH . G 6 HOH A 153 553 355 HOH HOH . G 6 HOH A 154 554 126 HOH HOH . G 6 HOH A 155 555 278 HOH HOH . G 6 HOH A 156 556 214 HOH HOH . G 6 HOH A 157 557 70 HOH HOH . G 6 HOH A 158 558 165 HOH HOH . G 6 HOH A 159 559 179 HOH HOH . G 6 HOH A 160 560 133 HOH HOH . G 6 HOH A 161 561 315 HOH HOH . G 6 HOH A 162 562 66 HOH HOH . G 6 HOH A 163 563 238 HOH HOH . G 6 HOH A 164 564 64 HOH HOH . G 6 HOH A 165 565 148 HOH HOH . G 6 HOH A 166 566 108 HOH HOH . G 6 HOH A 167 567 241 HOH HOH . G 6 HOH A 168 568 160 HOH HOH . G 6 HOH A 169 569 316 HOH HOH . G 6 HOH A 170 570 40 HOH HOH . G 6 HOH A 171 571 154 HOH HOH . G 6 HOH A 172 572 23 HOH HOH . G 6 HOH A 173 573 174 HOH HOH . G 6 HOH A 174 574 373 HOH HOH . G 6 HOH A 175 575 234 HOH HOH . G 6 HOH A 176 576 297 HOH HOH . G 6 HOH A 177 577 16 HOH HOH . G 6 HOH A 178 578 18 HOH HOH . G 6 HOH A 179 579 99 HOH HOH . G 6 HOH A 180 580 260 HOH HOH . G 6 HOH A 181 581 183 HOH HOH . G 6 HOH A 182 582 17 HOH HOH . G 6 HOH A 183 583 50 HOH HOH . G 6 HOH A 184 584 245 HOH HOH . G 6 HOH A 185 585 168 HOH HOH . G 6 HOH A 186 586 282 HOH HOH . G 6 HOH A 187 587 43 HOH HOH . G 6 HOH A 188 588 189 HOH HOH . G 6 HOH A 189 589 30 HOH HOH . G 6 HOH A 190 590 33 HOH HOH . G 6 HOH A 191 591 59 HOH HOH . G 6 HOH A 192 592 305 HOH HOH . G 6 HOH A 193 593 244 HOH HOH . G 6 HOH A 194 594 20 HOH HOH . G 6 HOH A 195 595 151 HOH HOH . G 6 HOH A 196 596 145 HOH HOH . G 6 HOH A 197 597 203 HOH HOH . G 6 HOH A 198 598 250 HOH HOH . G 6 HOH A 199 599 8 HOH HOH . G 6 HOH A 200 600 340 HOH HOH . G 6 HOH A 201 601 90 HOH HOH . G 6 HOH A 202 602 295 HOH HOH . G 6 HOH A 203 603 182 HOH HOH . G 6 HOH A 204 604 319 HOH HOH . G 6 HOH A 205 605 138 HOH HOH . G 6 HOH A 206 606 15 HOH HOH . G 6 HOH A 207 607 374 HOH HOH . G 6 HOH A 208 608 58 HOH HOH . G 6 HOH A 209 609 11 HOH HOH . G 6 HOH A 210 610 69 HOH HOH . G 6 HOH A 211 611 14 HOH HOH . G 6 HOH A 212 612 186 HOH HOH . G 6 HOH A 213 613 216 HOH HOH . G 6 HOH A 214 614 263 HOH HOH . G 6 HOH A 215 615 233 HOH HOH . G 6 HOH A 216 616 248 HOH HOH . G 6 HOH A 217 617 163 HOH HOH . G 6 HOH A 218 618 210 HOH HOH . G 6 HOH A 219 619 208 HOH HOH . G 6 HOH A 220 620 25 HOH HOH . G 6 HOH A 221 621 35 HOH HOH . G 6 HOH A 222 622 96 HOH HOH . G 6 HOH A 223 623 71 HOH HOH . G 6 HOH A 224 624 175 HOH HOH . G 6 HOH A 225 625 201 HOH HOH . G 6 HOH A 226 626 137 HOH HOH . G 6 HOH A 227 627 405 HOH HOH . G 6 HOH A 228 628 222 HOH HOH . G 6 HOH A 229 629 215 HOH HOH . G 6 HOH A 230 630 149 HOH HOH . G 6 HOH A 231 631 93 HOH HOH . G 6 HOH A 232 632 329 HOH HOH . G 6 HOH A 233 633 256 HOH HOH . G 6 HOH A 234 634 277 HOH HOH . G 6 HOH A 235 635 142 HOH HOH . G 6 HOH A 236 636 350 HOH HOH . G 6 HOH A 237 637 56 HOH HOH . G 6 HOH A 238 638 125 HOH HOH . G 6 HOH A 239 639 117 HOH HOH . G 6 HOH A 240 640 289 HOH HOH . G 6 HOH A 241 641 284 HOH HOH . G 6 HOH A 242 642 351 HOH HOH . G 6 HOH A 243 643 65 HOH HOH . G 6 HOH A 244 644 306 HOH HOH . G 6 HOH A 245 645 365 HOH HOH . G 6 HOH A 246 646 176 HOH HOH . G 6 HOH A 247 647 413 HOH HOH . G 6 HOH A 248 648 170 HOH HOH . G 6 HOH A 249 649 379 HOH HOH . G 6 HOH A 250 650 266 HOH HOH . G 6 HOH A 251 651 140 HOH HOH . G 6 HOH A 252 652 395 HOH HOH . G 6 HOH A 253 653 92 HOH HOH . G 6 HOH A 254 654 271 HOH HOH . G 6 HOH A 255 655 153 HOH HOH . G 6 HOH A 256 656 243 HOH HOH . G 6 HOH A 257 657 255 HOH HOH . G 6 HOH A 258 658 401 HOH HOH . G 6 HOH A 259 659 275 HOH HOH . G 6 HOH A 260 660 268 HOH HOH . G 6 HOH A 261 661 239 HOH HOH . G 6 HOH A 262 662 272 HOH HOH . G 6 HOH A 263 663 280 HOH HOH . G 6 HOH A 264 664 281 HOH HOH . G 6 HOH A 265 665 54 HOH HOH . G 6 HOH A 266 666 299 HOH HOH . G 6 HOH A 267 667 225 HOH HOH . G 6 HOH A 268 668 200 HOH HOH . G 6 HOH A 269 669 209 HOH HOH . G 6 HOH A 270 670 331 HOH HOH . G 6 HOH A 271 671 237 HOH HOH . G 6 HOH A 272 672 88 HOH HOH . G 6 HOH A 273 673 324 HOH HOH . G 6 HOH A 274 674 231 HOH HOH . G 6 HOH A 275 675 204 HOH HOH . G 6 HOH A 276 676 24 HOH HOH . G 6 HOH A 277 677 97 HOH HOH . G 6 HOH A 278 678 235 HOH HOH . G 6 HOH A 279 679 180 HOH HOH . G 6 HOH A 280 680 339 HOH HOH . G 6 HOH A 281 681 46 HOH HOH . G 6 HOH A 282 682 226 HOH HOH . G 6 HOH A 283 683 327 HOH HOH . G 6 HOH A 284 684 230 HOH HOH . G 6 HOH A 285 685 121 HOH HOH . G 6 HOH A 286 686 402 HOH HOH . G 6 HOH A 287 687 110 HOH HOH . G 6 HOH A 288 688 116 HOH HOH . G 6 HOH A 289 689 75 HOH HOH . G 6 HOH A 290 690 49 HOH HOH . G 6 HOH A 291 691 309 HOH HOH . G 6 HOH A 292 692 344 HOH HOH . G 6 HOH A 293 693 217 HOH HOH . G 6 HOH A 294 694 102 HOH HOH . G 6 HOH A 295 695 111 HOH HOH . G 6 HOH A 296 696 132 HOH HOH . G 6 HOH A 297 697 219 HOH HOH . G 6 HOH A 298 698 191 HOH HOH . G 6 HOH A 299 699 414 HOH HOH . G 6 HOH A 300 700 227 HOH HOH . G 6 HOH A 301 701 193 HOH HOH . G 6 HOH A 302 702 218 HOH HOH . G 6 HOH A 303 703 332 HOH HOH . G 6 HOH A 304 704 213 HOH HOH . G 6 HOH A 305 705 392 HOH HOH . G 6 HOH A 306 706 194 HOH HOH . G 6 HOH A 307 707 195 HOH HOH . G 6 HOH A 308 708 228 HOH HOH . G 6 HOH A 309 709 298 HOH HOH . G 6 HOH A 310 710 205 HOH HOH . G 6 HOH A 311 711 156 HOH HOH . G 6 HOH A 312 712 362 HOH HOH . G 6 HOH A 313 713 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -20.318 17.223 -11.927 1 33.55 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 -20.265 15.968 -12.62 1 30.34 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 -18.972 17.537 -11.284 1 35.66 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 -17.916 17.285 -12.218 1 36.51 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 -18.958 18.999 -10.845 1 36.85 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 -17.891 19.716 -11.479 1 38.62 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #