data_5W8S # _model_server_result.job_id vfzt9n4eQWGRxs-1o3rUBQ _model_server_result.datetime_utc '2024-10-19 01:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5W8S # _exptl.entry_id 5W8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W8S _cell.length_a 68.016 _cell.length_b 68.016 _cell.length_c 155.139 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -102.024 58.903584 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 225 A ASP 225 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.173 ? metalc ? metalc2 A OE2 GLU 227 A GLU 227 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc3 A O GLU 326 A GLU 326 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc4 A OE1 GLU 331 A GLU 331 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W8S _atom_sites.fract_transf_matrix[1][1] 0.014702 _atom_sites.fract_transf_matrix[1][2] 0.008488 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 2 NA A 1 402 2 NA NA . D 3 LI A 1 403 2 LI LI . E 4 HOH A 1 501 120 HOH HOH . E 4 HOH A 2 502 22 HOH HOH . E 4 HOH A 3 503 178 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 33 HOH HOH . E 4 HOH A 6 506 118 HOH HOH . E 4 HOH A 7 507 64 HOH HOH . E 4 HOH A 8 508 181 HOH HOH . E 4 HOH A 9 509 6 HOH HOH . E 4 HOH A 10 510 84 HOH HOH . E 4 HOH A 11 511 143 HOH HOH . E 4 HOH A 12 512 60 HOH HOH . E 4 HOH A 13 513 102 HOH HOH . E 4 HOH A 14 514 31 HOH HOH . E 4 HOH A 15 515 107 HOH HOH . E 4 HOH A 16 516 162 HOH HOH . E 4 HOH A 17 517 112 HOH HOH . E 4 HOH A 18 518 66 HOH HOH . E 4 HOH A 19 519 8 HOH HOH . E 4 HOH A 20 520 39 HOH HOH . E 4 HOH A 21 521 110 HOH HOH . E 4 HOH A 22 522 56 HOH HOH . E 4 HOH A 23 523 97 HOH HOH . E 4 HOH A 24 524 132 HOH HOH . E 4 HOH A 25 525 20 HOH HOH . E 4 HOH A 26 526 7 HOH HOH . E 4 HOH A 27 527 86 HOH HOH . E 4 HOH A 28 528 105 HOH HOH . E 4 HOH A 29 529 43 HOH HOH . E 4 HOH A 30 530 17 HOH HOH . E 4 HOH A 31 531 104 HOH HOH . E 4 HOH A 32 532 5 HOH HOH . E 4 HOH A 33 533 28 HOH HOH . E 4 HOH A 34 534 1 HOH HOH . E 4 HOH A 35 535 9 HOH HOH . E 4 HOH A 36 536 35 HOH HOH . E 4 HOH A 37 537 108 HOH HOH . E 4 HOH A 38 538 2 HOH HOH . E 4 HOH A 39 539 3 HOH HOH . E 4 HOH A 40 540 70 HOH HOH . E 4 HOH A 41 541 19 HOH HOH . E 4 HOH A 42 542 24 HOH HOH . E 4 HOH A 43 543 73 HOH HOH . E 4 HOH A 44 544 71 HOH HOH . E 4 HOH A 45 545 42 HOH HOH . E 4 HOH A 46 546 18 HOH HOH . E 4 HOH A 47 547 16 HOH HOH . E 4 HOH A 48 548 11 HOH HOH . E 4 HOH A 49 549 72 HOH HOH . E 4 HOH A 50 550 48 HOH HOH . E 4 HOH A 51 551 98 HOH HOH . E 4 HOH A 52 552 83 HOH HOH . E 4 HOH A 53 553 96 HOH HOH . E 4 HOH A 54 554 21 HOH HOH . E 4 HOH A 55 555 154 HOH HOH . E 4 HOH A 56 556 65 HOH HOH . E 4 HOH A 57 557 144 HOH HOH . E 4 HOH A 58 558 34 HOH HOH . E 4 HOH A 59 559 85 HOH HOH . E 4 HOH A 60 560 13 HOH HOH . E 4 HOH A 61 561 40 HOH HOH . E 4 HOH A 62 562 76 HOH HOH . E 4 HOH A 63 563 45 HOH HOH . E 4 HOH A 64 564 69 HOH HOH . E 4 HOH A 65 565 54 HOH HOH . E 4 HOH A 66 566 38 HOH HOH . E 4 HOH A 67 567 95 HOH HOH . E 4 HOH A 68 568 101 HOH HOH . E 4 HOH A 69 569 32 HOH HOH . E 4 HOH A 70 570 36 HOH HOH . E 4 HOH A 71 571 99 HOH HOH . E 4 HOH A 72 572 74 HOH HOH . E 4 HOH A 73 573 26 HOH HOH . E 4 HOH A 74 574 75 HOH HOH . E 4 HOH A 75 575 88 HOH HOH . E 4 HOH A 76 576 62 HOH HOH . E 4 HOH A 77 577 29 HOH HOH . E 4 HOH A 78 578 23 HOH HOH . E 4 HOH A 79 579 93 HOH HOH . E 4 HOH A 80 580 30 HOH HOH . E 4 HOH A 81 581 137 HOH HOH . E 4 HOH A 82 582 12 HOH HOH . E 4 HOH A 83 583 55 HOH HOH . E 4 HOH A 84 584 47 HOH HOH . E 4 HOH A 85 585 81 HOH HOH . E 4 HOH A 86 586 57 HOH HOH . E 4 HOH A 87 587 27 HOH HOH . E 4 HOH A 88 588 15 HOH HOH . E 4 HOH A 89 589 51 HOH HOH . E 4 HOH A 90 590 10 HOH HOH . E 4 HOH A 91 591 170 HOH HOH . E 4 HOH A 92 592 180 HOH HOH . E 4 HOH A 93 593 78 HOH HOH . E 4 HOH A 94 594 130 HOH HOH . E 4 HOH A 95 595 82 HOH HOH . E 4 HOH A 96 596 116 HOH HOH . E 4 HOH A 97 597 128 HOH HOH . E 4 HOH A 98 598 161 HOH HOH . E 4 HOH A 99 599 53 HOH HOH . E 4 HOH A 100 600 44 HOH HOH . E 4 HOH A 101 601 91 HOH HOH . E 4 HOH A 102 602 109 HOH HOH . E 4 HOH A 103 603 52 HOH HOH . E 4 HOH A 104 604 59 HOH HOH . E 4 HOH A 105 605 94 HOH HOH . E 4 HOH A 106 606 50 HOH HOH . E 4 HOH A 107 607 37 HOH HOH . E 4 HOH A 108 608 111 HOH HOH . E 4 HOH A 109 609 127 HOH HOH . E 4 HOH A 110 610 106 HOH HOH . E 4 HOH A 111 611 129 HOH HOH . E 4 HOH A 112 612 136 HOH HOH . E 4 HOH A 113 613 46 HOH HOH . E 4 HOH A 114 614 58 HOH HOH . E 4 HOH A 115 615 163 HOH HOH . E 4 HOH A 116 616 164 HOH HOH . E 4 HOH A 117 617 80 HOH HOH . E 4 HOH A 118 618 141 HOH HOH . E 4 HOH A 119 619 63 HOH HOH . E 4 HOH A 120 620 41 HOH HOH . E 4 HOH A 121 621 114 HOH HOH . E 4 HOH A 122 622 79 HOH HOH . E 4 HOH A 123 623 89 HOH HOH . E 4 HOH A 124 624 25 HOH HOH . E 4 HOH A 125 625 119 HOH HOH . E 4 HOH A 126 626 174 HOH HOH . E 4 HOH A 127 627 176 HOH HOH . E 4 HOH A 128 628 175 HOH HOH . E 4 HOH A 129 629 122 HOH HOH . E 4 HOH A 130 630 67 HOH HOH . E 4 HOH A 131 631 142 HOH HOH . E 4 HOH A 132 632 134 HOH HOH . E 4 HOH A 133 633 139 HOH HOH . E 4 HOH A 134 634 87 HOH HOH . E 4 HOH A 135 635 135 HOH HOH . E 4 HOH A 136 636 117 HOH HOH . E 4 HOH A 137 637 92 HOH HOH . E 4 HOH A 138 638 49 HOH HOH . E 4 HOH A 139 639 124 HOH HOH . E 4 HOH A 140 640 166 HOH HOH . E 4 HOH A 141 641 126 HOH HOH . E 4 HOH A 142 642 131 HOH HOH . E 4 HOH A 143 643 68 HOH HOH . E 4 HOH A 144 644 61 HOH HOH . E 4 HOH A 145 645 113 HOH HOH . E 4 HOH A 146 646 14 HOH HOH . E 4 HOH A 147 647 146 HOH HOH . E 4 HOH A 148 648 145 HOH HOH . E 4 HOH A 149 649 152 HOH HOH . E 4 HOH A 150 650 179 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -48.554 _atom_site.Cartn_y 36.632 _atom_site.Cartn_z 36.481 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #