data_5W92 # _model_server_result.job_id B-4aqYtSCSep-djpYu423A _model_server_result.datetime_utc '2024-11-28 13:25:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5W92 # _exptl.entry_id 5W92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 566.414 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2S)-1-(3,5-dichloropyridine-4-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-[2-(phenylsulfonyl)ethyl]-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W92 _cell.length_a 90.448 _cell.length_b 90.448 _cell.length_c 134.167 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_885 -x+3,-y+3,z -1 0 0 0 -1 0 0 0 1 271.344 271.344 0 3 'crystal symmetry operation' 3_855 -y+3,x,z 0 -1 0 1 0 0 0 0 1 271.344 0 0 4 'crystal symmetry operation' 4_585 y,-x+3,z 0 1 0 -1 0 0 0 0 1 0 271.344 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc5 A OE1 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O6 KU0 . A KU0 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O5 KU0 . A KU0 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O2 KU0 . A KU0 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O5 KU0 . A KU0 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc11 C MN MN . A MN 202 1_555 F O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc12 C MN MN . A MN 202 1_555 F O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula 'C23 H21 Cl2 N5 O6 S' _chem_comp.formula_weight 566.414 _chem_comp.id KU0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2S)-1-(3,5-dichloropyridine-4-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-[2-(phenylsulfonyl)ethyl]-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 KU0 doub 259 n n CL2 C21 KU0 sing 260 n n C3 C2 KU0 sing 261 n n C3 N1 KU0 sing 262 n n C21 C2 KU0 doub 263 n y C21 C22 KU0 sing 264 n y C2 C1 KU0 sing 265 n y C20 N1 KU0 sing 266 n n C20 C19 KU0 sing 267 n n C22 N5 KU0 doub 268 n y C1 CL1 KU0 sing 269 n n C1 C23 KU0 doub 270 n y N1 C4 KU0 sing 271 n n C8 N3 KU0 sing 272 n n C8 C9 KU0 sing 273 n n N5 C23 KU0 sing 274 n y N3 C7 KU0 sing 275 n n O3 S1 KU0 doub 276 n n C19 C18 KU0 sing 277 n n C9 S1 KU0 sing 278 n n C7 O2 KU0 doub 279 n n C7 C6 KU0 sing 280 n n C4 C18 KU0 sing 281 n n C4 C5 KU0 sing 282 n n N2 C6 KU0 sing 283 n n N2 C5 KU0 doub 284 n n C6 C16 KU0 doub 285 n n C5 N4 KU0 sing 286 n n S1 O4 KU0 doub 287 n n S1 C10 KU0 sing 288 n n N4 C17 KU0 sing 289 n n C16 O5 KU0 sing 290 n n C16 C17 KU0 sing 291 n n C10 C11 KU0 doub 292 n y C10 C15 KU0 sing 293 n y C11 C12 KU0 sing 294 n y C17 O6 KU0 doub 295 n n C12 C13 KU0 doub 296 n y C15 C14 KU0 doub 297 n y C13 C14 KU0 sing 298 n y C11 H1 KU0 sing 299 n n C12 H2 KU0 sing 300 n n C13 H3 KU0 sing 301 n n C14 H4 KU0 sing 302 n n C15 H5 KU0 sing 303 n n C18 H6 KU0 sing 304 n n C18 H7 KU0 sing 305 n n C19 H8 KU0 sing 306 n n C19 H9 KU0 sing 307 n n C20 H10 KU0 sing 308 n n C20 H11 KU0 sing 309 n n C22 H12 KU0 sing 310 n n C23 H13 KU0 sing 311 n n C4 H14 KU0 sing 312 n n C8 H15 KU0 sing 313 n n C8 H16 KU0 sing 314 n n C9 H17 KU0 sing 315 n n C9 H18 KU0 sing 316 n n N3 H19 KU0 sing 317 n n N4 H20 KU0 sing 318 n n O5 H21 KU0 sing 319 n n # _atom_sites.entry_id 5W92 _atom_sites.fract_transf_matrix[1][1] 0.011056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 2 MN A 1 202 2 MN MN . D 3 KU0 A 1 203 1 KU0 KU0 . E 4 9HD A 1 204 1 9HD 9HD . F 5 HOH A 1 301 18 HOH HOH . F 5 HOH A 2 302 1 HOH HOH . F 5 HOH A 3 303 4 HOH HOH . F 5 HOH A 4 304 2 HOH HOH . F 5 HOH A 5 305 16 HOH HOH . F 5 HOH A 6 306 7 HOH HOH . F 5 HOH A 7 307 13 HOH HOH . F 5 HOH A 8 308 14 HOH HOH . F 5 HOH A 9 309 3 HOH HOH . F 5 HOH A 10 310 9 HOH HOH . F 5 HOH A 11 311 11 HOH HOH . F 5 HOH A 12 312 15 HOH HOH . F 5 HOH A 13 313 8 HOH HOH . F 5 HOH A 14 314 17 HOH HOH . F 5 HOH A 15 315 6 HOH HOH . F 5 HOH A 16 316 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KU0 . . . D 3 127.248 104.885 417 1 118.74 ? C1 KU0 203 A 1 HETATM 2 C C10 KU0 . . . D 3 134.579 102.393 420.183 1 106.34 ? C10 KU0 203 A 1 HETATM 3 C C11 KU0 . . . D 3 133.641 101.375 420.184 1 107.24 ? C11 KU0 203 A 1 HETATM 4 C C12 KU0 . . . D 3 132.566 101.441 421.054 1 109.01 ? C12 KU0 203 A 1 HETATM 5 C C13 KU0 . . . D 3 132.437 102.503 421.922 1 106.6 ? C13 KU0 203 A 1 HETATM 6 C C14 KU0 . . . D 3 133.376 103.508 421.925 1 106.47 ? C14 KU0 203 A 1 HETATM 7 C C15 KU0 . . . D 3 134.455 103.458 421.058 1 104.78 ? C15 KU0 203 A 1 HETATM 8 C C16 KU0 . . . D 3 131.338 105.926 419.967 1 69.4 ? C16 KU0 203 A 1 HETATM 9 C C17 KU0 . . . D 3 130.044 105.738 420.464 1 69.99 ? C17 KU0 203 A 1 HETATM 10 C C18 KU0 . . . D 3 129.479 101.28 419.019 1 90.99 ? C18 KU0 203 A 1 HETATM 11 C C19 KU0 . . . D 3 130.587 100.823 418.08 1 93.28 ? C19 KU0 203 A 1 HETATM 12 C C2 KU0 . . . D 3 128.521 104.694 416.46 1 112.61 ? C2 KU0 203 A 1 HETATM 13 C C20 KU0 . . . D 3 130.019 101.188 416.729 1 92.42 ? C20 KU0 203 A 1 HETATM 14 C C21 KU0 . . . D 3 129.339 105.82 416.35 1 120.26 ? C21 KU0 203 A 1 HETATM 15 C C22 KU0 . . . D 3 128.856 107.057 416.755 1 116.96 ? C22 KU0 203 A 1 HETATM 16 C C23 KU0 . . . D 3 126.847 106.157 417.383 1 118.73 ? C23 KU0 203 A 1 HETATM 17 C C3 KU0 . . . D 3 129.038 103.35 416.042 1 103.44 ? C3 KU0 203 A 1 HETATM 18 C C4 KU0 . . . D 3 129.113 102.664 418.456 1 90.52 ? C4 KU0 203 A 1 HETATM 19 C C5 KU0 . . . D 3 129.887 103.83 419.03 1 80.91 ? C5 KU0 203 A 1 HETATM 20 C C6 KU0 . . . D 3 131.837 105.07 419.025 1 75.14 ? C6 KU0 203 A 1 HETATM 21 C C7 KU0 . . . D 3 133.225 105.216 418.45 1 75.99 ? C7 KU0 203 A 1 HETATM 22 C C8 KU0 . . . D 3 134.999 104.08 417.212 1 89.6 ? C8 KU0 203 A 1 HETATM 23 C C9 KU0 . . . D 3 136.039 103.908 418.302 1 96.15 ? C9 KU0 203 A 1 HETATM 24 N N1 KU0 . . . D 3 129.358 102.474 417.004 1 96.82 ? N1 KU0 203 A 1 HETATM 25 N N2 KU0 . . . D 3 131.118 104.042 418.557 1 77.21 ? N2 KU0 203 A 1 HETATM 26 N N3 KU0 . . . D 3 133.64 104.187 417.72 1 84.33 ? N3 KU0 203 A 1 HETATM 27 N N4 KU0 . . . D 3 129.337 104.664 419.966 1 74.99 ? N4 KU0 203 A 1 HETATM 28 N N5 KU0 . . . D 3 127.637 107.22 417.261 1 117.79 ? N5 KU0 203 A 1 HETATM 29 O O1 KU0 . . . D 3 129.227 103.09 414.855 1 104.16 ? O1 KU0 203 A 1 HETATM 30 O O2 KU0 . . . D 3 133.915 106.206 418.67 1 76.08 ? O2 KU0 203 A 1 HETATM 31 O O3 KU0 . . . D 3 135.689 101.338 418.072 1 112.21 ? O3 KU0 203 A 1 HETATM 32 O O4 KU0 . . . D 3 137.144 102.148 419.885 1 107.01 ? O4 KU0 203 A 1 HETATM 33 O O5 KU0 . . . D 3 132.018 106.97 420.462 1 63.42 ? O5 KU0 203 A 1 HETATM 34 O O6 KU0 . . . D 3 129.513 106.465 421.318 1 68.26 ? O6 KU0 203 A 1 HETATM 35 S S1 KU0 . . . D 3 135.962 102.316 419.085 1 107.51 ? S1 KU0 203 A 1 HETATM 36 CL CL1 KU0 . . . D 3 126.161 103.561 417.196 1 127.09 ? CL1 KU0 203 A 1 HETATM 37 CL CL2 KU0 . . . D 3 130.93 105.693 415.695 1 130.99 ? CL2 KU0 203 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 37 #