data_5WA7 # _model_server_result.job_id U6g9BVVQffC2gum2pNa2AQ _model_server_result.datetime_utc '2024-11-13 20:41:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wa7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5WA7 # _exptl.entry_id 5WA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.969 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{(2S)-1-[3-(2-chlorophenyl)propanoyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WA7 _cell.length_a 90.298 _cell.length_b 90.298 _cell.length_c 135.708 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 A OD1 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc4 A OD2 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 A OE1 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc7 B MN MN . A MN 201 1_555 E O1 KU4 . A KU4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 B MN MN . A MN 201 1_555 E O2 KU4 . A KU4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc9 C MN MN . A MN 202 1_555 E O4 KU4 . A KU4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc10 C MN MN . A MN 202 1_555 E O2 KU4 . A KU4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc11 C MN MN . A MN 202 1_555 F O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc12 C MN MN . A MN 202 1_555 F O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'C26 H27 Cl N4 O5' _chem_comp.formula_weight 510.969 _chem_comp.id KU4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{(2S)-1-[3-(2-chlorophenyl)propanoyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 KU4 doub 173 n y C10 C11 KU4 sing 174 n y C9 C8 KU4 sing 175 n y C11 C12 KU4 doub 176 n y C8 C7 KU4 doub 177 n y C12 C7 KU4 sing 178 n y C7 O3 KU4 sing 179 n n O3 C6 KU4 sing 180 n n C6 C5 KU4 sing 181 n n C17 C16 KU4 sing 182 n n C17 C18 KU4 sing 183 n n CL1 C23 KU4 sing 184 n n O5 C15 KU4 doub 185 n n C16 C15 KU4 sing 186 n n C5 N1 KU4 sing 187 n n C18 C23 KU4 doub 188 n y C18 C19 KU4 sing 189 n y C15 N3 KU4 sing 190 n n C23 C22 KU4 sing 191 n y C19 C20 KU4 doub 192 n y N1 C4 KU4 sing 193 n n C22 C21 KU4 doub 194 n y N3 C24 KU4 sing 195 n n N3 C14 KU4 sing 196 n n C20 C21 KU4 sing 197 n y C4 O4 KU4 doub 198 n n C4 C3 KU4 sing 199 n n C24 C25 KU4 sing 200 n n N2 C3 KU4 sing 201 n n N2 C13 KU4 doub 202 n n C3 C2 KU4 doub 203 n n C14 C13 KU4 sing 204 n n C14 C26 KU4 sing 205 n n C13 N4 KU4 sing 206 n n C2 O2 KU4 sing 207 n n C2 C1 KU4 sing 208 n n N4 C1 KU4 sing 209 n n C25 C26 KU4 sing 210 n n C1 O1 KU4 doub 211 n n C10 H1 KU4 sing 212 n n C11 H2 KU4 sing 213 n n C12 H3 KU4 sing 214 n n C14 H4 KU4 sing 215 n n C16 H5 KU4 sing 216 n n C16 H6 KU4 sing 217 n n C17 H7 KU4 sing 218 n n C17 H8 KU4 sing 219 n n C19 H9 KU4 sing 220 n n C20 H10 KU4 sing 221 n n C21 H11 KU4 sing 222 n n C22 H12 KU4 sing 223 n n C24 H13 KU4 sing 224 n n C24 H14 KU4 sing 225 n n C25 H15 KU4 sing 226 n n C25 H16 KU4 sing 227 n n C26 H17 KU4 sing 228 n n C26 H18 KU4 sing 229 n n C5 H19 KU4 sing 230 n n C5 H20 KU4 sing 231 n n C6 H21 KU4 sing 232 n n C6 H22 KU4 sing 233 n n C8 H23 KU4 sing 234 n n C9 H24 KU4 sing 235 n n N1 H25 KU4 sing 236 n n N4 H26 KU4 sing 237 n n O2 H27 KU4 sing 238 n n # _atom_sites.entry_id 5WA7 _atom_sites.fract_transf_matrix[1][1] 0.011074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 2 MN A 1 202 2 MN MN . D 3 SO4 A 1 203 1 SO4 SO4 . E 4 KU4 A 1 204 1 KU4 KU4 . F 5 HOH A 1 301 1 HOH HOH . F 5 HOH A 2 302 11 HOH HOH . F 5 HOH A 3 303 5 HOH HOH . F 5 HOH A 4 304 2 HOH HOH . F 5 HOH A 5 305 3 HOH HOH . F 5 HOH A 6 306 9 HOH HOH . F 5 HOH A 7 307 8 HOH HOH . F 5 HOH A 8 308 4 HOH HOH . F 5 HOH A 9 309 7 HOH HOH . F 5 HOH A 10 310 12 HOH HOH . F 5 HOH A 11 311 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KU4 . . . E 4 490.177 195.96 561.424 1 123.58 ? C1 KU4 204 A 1 HETATM 2 C C10 KU4 . . . E 4 491.338 193.373 552.011 1 121.95 ? C10 KU4 204 A 1 HETATM 3 C C11 KU4 . . . E 4 491.044 192.3 552.818 1 124.51 ? C11 KU4 204 A 1 HETATM 4 C C12 KU4 . . . E 4 491.656 192.155 554.051 1 123.95 ? C12 KU4 204 A 1 HETATM 5 C C13 KU4 . . . E 4 489.692 193.881 560.33 1 132.84 ? C13 KU4 204 A 1 HETATM 6 C C14 KU4 . . . E 4 488.752 192.724 560.057 1 135.85 ? C14 KU4 204 A 1 HETATM 7 C C15 KU4 . . . E 4 489.264 191.914 557.732 1 134.66 ? C15 KU4 204 A 1 HETATM 8 C C16 KU4 . . . E 4 489.31 193.301 557.142 1 131.86 ? C16 KU4 204 A 1 HETATM 9 C C17 KU4 . . . E 4 487.959 193.834 556.685 1 129.89 ? C17 KU4 204 A 1 HETATM 10 C C18 KU4 . . . E 4 487.374 194.882 557.603 0 128.05 ? C18 KU4 204 A 1 HETATM 11 C C19 KU4 . . . E 4 486.175 194.673 558.281 0 127.33 ? C19 KU4 204 A 1 HETATM 12 C C2 KU4 . . . E 4 491.414 195.933 560.786 1 125.64 ? C2 KU4 204 A 1 HETATM 13 C C20 KU4 . . . E 4 485.635 195.633 559.116 1 125.33 ? C20 KU4 204 A 1 HETATM 14 C C21 KU4 . . . E 4 486.283 196.832 559.293 1 122.49 ? C21 KU4 204 A 1 HETATM 15 C C22 KU4 . . . E 4 487.466 197.075 558.642 1 122.77 ? C22 KU4 204 A 1 HETATM 16 C C23 KU4 . . . E 4 488.001 196.11 557.806 1 127.87 ? C23 KU4 204 A 1 HETATM 17 C C24 KU4 . . . E 4 489.75 190.528 559.718 1 141.48 ? C24 KU4 204 A 1 HETATM 18 C C25 KU4 . . . E 4 489.736 190.887 561.186 1 140.22 ? C25 KU4 204 A 1 HETATM 19 C C26 KU4 . . . E 4 488.525 191.803 561.267 1 137.18 ? C26 KU4 204 A 1 HETATM 20 C C3 KU4 . . . E 4 491.729 194.897 559.959 1 130.08 ? C3 KU4 204 A 1 HETATM 21 C C4 KU4 . . . E 4 493.064 194.864 559.264 1 130.49 ? C4 KU4 204 A 1 HETATM 22 C C5 KU4 . . . E 4 494.422 193.749 557.561 1 126.86 ? C5 KU4 204 A 1 HETATM 23 C C6 KU4 . . . E 4 494.134 193.947 556.094 1 123.54 ? C6 KU4 204 A 1 HETATM 24 C C7 KU4 . . . E 4 492.575 193.104 554.471 1 121.87 ? C7 KU4 204 A 1 HETATM 25 C C8 KU4 . . . E 4 492.872 194.19 553.661 1 118.95 ? C8 KU4 204 A 1 HETATM 26 C C9 KU4 . . . E 4 492.248 194.313 552.431 1 119.53 ? C9 KU4 204 A 1 HETATM 27 N N1 KU4 . . . E 4 493.228 193.881 558.381 1 130.36 ? N1 KU4 204 A 1 HETATM 28 N N2 KU4 . . . E 4 490.887 193.878 559.736 1 132.92 ? N2 KU4 204 A 1 HETATM 29 N N3 KU4 . . . E 4 489.257 191.751 559.067 1 137.36 ? N3 KU4 204 A 1 HETATM 30 N N4 KU4 . . . E 4 489.33 194.902 561.169 1 129.7 ? N4 KU4 204 A 1 HETATM 31 O O1 KU4 . . . E 4 489.818 196.867 562.188 1 117.7 ? O1 KU4 204 A 1 HETATM 32 O O2 KU4 . . . E 4 492.232 196.965 561.037 1 121.73 ? O2 KU4 204 A 1 HETATM 33 O O3 KU4 . . . E 4 493.177 192.964 555.692 1 124.4 ? O3 KU4 204 A 1 HETATM 34 O O4 KU4 . . . E 4 493.918 195.716 559.505 1 128.78 ? O4 KU4 204 A 1 HETATM 35 O O5 KU4 . . . E 4 489.215 190.926 557.005 1 136.08 ? O5 KU4 204 A 1 HETATM 36 CL CL1 KU4 . . . E 4 489.508 196.482 557.004 1 132.33 ? CL1 KU4 204 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #