data_5WAW # _model_server_result.job_id 55O06KlGtcePruMmCTPzIw _model_server_result.datetime_utc '2025-02-28 09:36:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5waw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5WAW # _exptl.entry_id 5WAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.38 _cell.angle_gamma 90 _cell.entry_id 5WAW _cell.length_a 132.018 _cell.length_b 58.014 _cell.length_c 80.442 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 142 H CYS 142 1_555 B SG CYS 198 H CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OD1 ASP 1 L ASP 1 1_555 E ZN ZN . L ZN 303 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc2 A OE2 GLU 84 L GLU 84 1_555 D ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 A OE2 GLU 84 L GLU 84 1_555 D ZN ZN . L ZN 302 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 A OD1 ASN 142 L ASN 142 1_555 C ZN ZN . L ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc5 A OD1 ASN 143 L ASN 143 1_555 C ZN ZN . L ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 A OD1 ASP 190 L ASP 190 1_555 E ZN ZN . L ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc7 A OD2 ASP 190 L ASP 190 1_555 E ZN ZN . L ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc8 A NE2 HIS 194 L HIS 194 1_555 E ZN ZN . L ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc9 C ZN ZN . L ZN 301 1_555 B NE2 HIS 166 H HIS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc10 C ZN ZN . L ZN 301 1_555 I O HOH . H HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5WAW _atom_sites.fract_transf_matrix[1][1] 0.007575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005183 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN L 1 301 1 ZN ZN . D 3 ZN L 1 302 2 ZN ZN . E 3 ZN L 1 303 3 ZN ZN . F 4 GOL L 1 304 1 GOL GOL . G 3 ZN H 1 301 4 ZN ZN . H 5 HOH L 1 401 234 HOH HOH . H 5 HOH L 2 402 229 HOH HOH . H 5 HOH L 3 403 247 HOH HOH . H 5 HOH L 4 404 237 HOH HOH . H 5 HOH L 5 405 230 HOH HOH . H 5 HOH L 6 406 239 HOH HOH . H 5 HOH L 7 407 69 HOH HOH . H 5 HOH L 8 408 173 HOH HOH . H 5 HOH L 9 409 157 HOH HOH . H 5 HOH L 10 410 231 HOH HOH . H 5 HOH L 11 411 168 HOH HOH . H 5 HOH L 12 412 236 HOH HOH . H 5 HOH L 13 413 218 HOH HOH . H 5 HOH L 14 414 137 HOH HOH . H 5 HOH L 15 415 141 HOH HOH . H 5 HOH L 16 416 250 HOH HOH . H 5 HOH L 17 417 140 HOH HOH . H 5 HOH L 18 418 177 HOH HOH . H 5 HOH L 19 419 201 HOH HOH . H 5 HOH L 20 420 245 HOH HOH . H 5 HOH L 21 421 18 HOH HOH . I 5 HOH H 1 401 149 HOH HOH . I 5 HOH H 2 402 7 HOH HOH . I 5 HOH H 3 403 249 HOH HOH . I 5 HOH H 4 404 244 HOH HOH . I 5 HOH H 5 405 241 HOH HOH . I 5 HOH H 6 406 144 HOH HOH . I 5 HOH H 7 407 232 HOH HOH . I 5 HOH H 8 408 207 HOH HOH . I 5 HOH H 9 409 238 HOH HOH . I 5 HOH H 10 410 223 HOH HOH . I 5 HOH H 11 411 190 HOH HOH . I 5 HOH H 12 412 29 HOH HOH . I 5 HOH H 13 413 220 HOH HOH . I 5 HOH H 14 414 56 HOH HOH . I 5 HOH H 15 415 233 HOH HOH . I 5 HOH H 16 416 160 HOH HOH . I 5 HOH H 17 417 156 HOH HOH . I 5 HOH H 18 418 240 HOH HOH . I 5 HOH H 19 419 224 HOH HOH . I 5 HOH H 20 420 136 HOH HOH . I 5 HOH H 21 421 227 HOH HOH . I 5 HOH H 22 422 44 HOH HOH . I 5 HOH H 23 423 248 HOH HOH . I 5 HOH H 24 424 226 HOH HOH . I 5 HOH H 25 425 246 HOH HOH . I 5 HOH H 26 426 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -22.722 -16.82 -36.183 1 63.95 ? C1 GOL 304 L 1 HETATM 2 O O1 GOL . . . F 4 -22.682 -17.718 -37.3 1 57.38 ? O1 GOL 304 L 1 HETATM 3 C C2 GOL . . . F 4 -21.778 -15.637 -36.435 1 67.05 ? C2 GOL 304 L 1 HETATM 4 O O2 GOL . . . F 4 -22.033 -15.113 -37.746 1 60.02 ? O2 GOL 304 L 1 HETATM 5 C C3 GOL . . . F 4 -21.957 -14.541 -35.359 1 71.97 ? C3 GOL 304 L 1 HETATM 6 O O3 GOL . . . F 4 -20.926 -13.528 -35.39 1 70.02 ? O3 GOL 304 L 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #