data_5WAY # _model_server_result.job_id iiSY_Q5uHTR8MmxT0NbdaA _model_server_result.datetime_utc '2024-11-05 00:38:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5way # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 5WAY # _exptl.entry_id 5WAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.76 _cell.angle_gamma 90 _cell.entry_id 5WAY _cell.length_a 80.118 _cell.length_b 106.256 _cell.length_c 100.213 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 292 A HIS 292 1_555 D NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A OD1 ASP 296 A ASP 296 1_555 D NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A O SER 424 A SER 424 1_555 C K K . A K 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc4 A O TYR 425 A TYR 425 1_555 C K K . A K 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc5 A O CYS 427 A CYS 427 1_555 C K K . A K 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc6 A OD1 ASN 429 A ASN 429 1_555 C K K . A K 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc7 C K K . A K 701 1_555 F O HOH . A HOH 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc8 D NI NI . A NI 702 1_555 F O HOH . A HOH 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc9 D NI NI . A NI 702 1_455 B NE2 HIS 292 B HIS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc10 D NI NI . A NI 702 1_455 B OD2 ASP 296 B ASP 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc11 D NI NI . A NI 702 1_555 G O HOH . B HOH 726 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WAY _atom_sites.fract_transf_matrix[1][1] 0.012482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002597 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 701 701 K K . D 3 NI A 1 702 702 NI NI . E 4 GOL B 1 601 703 GOL GOL . F 5 HOH A 1 801 30 HOH HOH . F 5 HOH A 2 802 117 HOH HOH . F 5 HOH A 3 803 175 HOH HOH . F 5 HOH A 4 804 129 HOH HOH . F 5 HOH A 5 805 101 HOH HOH . F 5 HOH A 6 806 124 HOH HOH . F 5 HOH A 7 807 93 HOH HOH . F 5 HOH A 8 808 155 HOH HOH . F 5 HOH A 9 809 95 HOH HOH . F 5 HOH A 10 810 66 HOH HOH . F 5 HOH A 11 811 210 HOH HOH . F 5 HOH A 12 812 151 HOH HOH . F 5 HOH A 13 813 53 HOH HOH . F 5 HOH A 14 814 59 HOH HOH . F 5 HOH A 15 815 15 HOH HOH . F 5 HOH A 16 816 57 HOH HOH . F 5 HOH A 17 817 121 HOH HOH . F 5 HOH A 18 818 86 HOH HOH . F 5 HOH A 19 819 212 HOH HOH . F 5 HOH A 20 820 226 HOH HOH . F 5 HOH A 21 821 96 HOH HOH . F 5 HOH A 22 822 73 HOH HOH . F 5 HOH A 23 823 20 HOH HOH . F 5 HOH A 24 824 194 HOH HOH . F 5 HOH A 25 825 213 HOH HOH . F 5 HOH A 26 826 14 HOH HOH . F 5 HOH A 27 827 141 HOH HOH . F 5 HOH A 28 828 10 HOH HOH . F 5 HOH A 29 829 104 HOH HOH . F 5 HOH A 30 830 12 HOH HOH . F 5 HOH A 31 831 196 HOH HOH . F 5 HOH A 32 832 47 HOH HOH . F 5 HOH A 33 833 44 HOH HOH . F 5 HOH A 34 834 24 HOH HOH . F 5 HOH A 35 835 45 HOH HOH . F 5 HOH A 36 836 21 HOH HOH . F 5 HOH A 37 837 227 HOH HOH . F 5 HOH A 38 838 206 HOH HOH . F 5 HOH A 39 839 84 HOH HOH . F 5 HOH A 40 840 34 HOH HOH . F 5 HOH A 41 841 72 HOH HOH . F 5 HOH A 42 842 118 HOH HOH . F 5 HOH A 43 843 197 HOH HOH . F 5 HOH A 44 844 33 HOH HOH . F 5 HOH A 45 845 55 HOH HOH . F 5 HOH A 46 846 63 HOH HOH . F 5 HOH A 47 847 42 HOH HOH . F 5 HOH A 48 848 195 HOH HOH . F 5 HOH A 49 849 40 HOH HOH . F 5 HOH A 50 850 205 HOH HOH . F 5 HOH A 51 851 109 HOH HOH . F 5 HOH A 52 852 159 HOH HOH . F 5 HOH A 53 853 165 HOH HOH . F 5 HOH A 54 854 18 HOH HOH . F 5 HOH A 55 855 171 HOH HOH . F 5 HOH A 56 856 22 HOH HOH . F 5 HOH A 57 857 49 HOH HOH . F 5 HOH A 58 858 108 HOH HOH . F 5 HOH A 59 859 142 HOH HOH . F 5 HOH A 60 860 64 HOH HOH . F 5 HOH A 61 861 35 HOH HOH . F 5 HOH A 62 862 114 HOH HOH . F 5 HOH A 63 863 16 HOH HOH . F 5 HOH A 64 864 116 HOH HOH . F 5 HOH A 65 865 113 HOH HOH . F 5 HOH A 66 866 103 HOH HOH . F 5 HOH A 67 867 182 HOH HOH . F 5 HOH A 68 868 4 HOH HOH . F 5 HOH A 69 869 110 HOH HOH . F 5 HOH A 70 870 11 HOH HOH . F 5 HOH A 71 871 36 HOH HOH . F 5 HOH A 72 872 176 HOH HOH . F 5 HOH A 73 873 161 HOH HOH . F 5 HOH A 74 874 106 HOH HOH . F 5 HOH A 75 875 181 HOH HOH . F 5 HOH A 76 876 149 HOH HOH . F 5 HOH A 77 877 88 HOH HOH . F 5 HOH A 78 878 23 HOH HOH . F 5 HOH A 79 879 172 HOH HOH . F 5 HOH A 80 880 62 HOH HOH . F 5 HOH A 81 881 145 HOH HOH . F 5 HOH A 82 882 208 HOH HOH . F 5 HOH A 83 883 160 HOH HOH . F 5 HOH A 84 884 2 HOH HOH . F 5 HOH A 85 885 52 HOH HOH . F 5 HOH A 86 886 166 HOH HOH . F 5 HOH A 87 887 81 HOH HOH . F 5 HOH A 88 888 7 HOH HOH . F 5 HOH A 89 889 169 HOH HOH . F 5 HOH A 90 890 46 HOH HOH . F 5 HOH A 91 891 123 HOH HOH . F 5 HOH A 92 892 204 HOH HOH . F 5 HOH A 93 893 185 HOH HOH . F 5 HOH A 94 894 6 HOH HOH . F 5 HOH A 95 895 202 HOH HOH . F 5 HOH A 96 896 27 HOH HOH . F 5 HOH A 97 897 146 HOH HOH . F 5 HOH A 98 898 51 HOH HOH . F 5 HOH A 99 899 74 HOH HOH . F 5 HOH A 100 900 168 HOH HOH . F 5 HOH A 101 901 150 HOH HOH . F 5 HOH A 102 902 132 HOH HOH . F 5 HOH A 103 903 60 HOH HOH . F 5 HOH A 104 904 97 HOH HOH . F 5 HOH A 105 905 133 HOH HOH . F 5 HOH A 106 906 107 HOH HOH . F 5 HOH A 107 907 31 HOH HOH . F 5 HOH A 108 908 92 HOH HOH . F 5 HOH A 109 909 69 HOH HOH . F 5 HOH A 110 910 91 HOH HOH . F 5 HOH A 111 911 198 HOH HOH . F 5 HOH A 112 912 214 HOH HOH . F 5 HOH A 113 913 211 HOH HOH . F 5 HOH A 114 914 209 HOH HOH . F 5 HOH A 115 915 61 HOH HOH . F 5 HOH A 116 916 180 HOH HOH . F 5 HOH A 117 917 207 HOH HOH . F 5 HOH A 118 918 162 HOH HOH . F 5 HOH A 119 919 186 HOH HOH . F 5 HOH A 120 920 80 HOH HOH . F 5 HOH A 121 921 140 HOH HOH . F 5 HOH A 122 922 224 HOH HOH . F 5 HOH A 123 923 139 HOH HOH . F 5 HOH A 124 924 177 HOH HOH . F 5 HOH A 125 925 85 HOH HOH . F 5 HOH A 126 926 199 HOH HOH . F 5 HOH A 127 927 136 HOH HOH . F 5 HOH A 128 928 71 HOH HOH . F 5 HOH A 129 929 200 HOH HOH . F 5 HOH A 130 930 163 HOH HOH . F 5 HOH A 131 931 178 HOH HOH . G 5 HOH B 1 701 201 HOH HOH . G 5 HOH B 2 702 125 HOH HOH . G 5 HOH B 3 703 119 HOH HOH . G 5 HOH B 4 704 184 HOH HOH . G 5 HOH B 5 705 152 HOH HOH . G 5 HOH B 6 706 39 HOH HOH . G 5 HOH B 7 707 78 HOH HOH . G 5 HOH B 8 708 179 HOH HOH . G 5 HOH B 9 709 32 HOH HOH . G 5 HOH B 10 710 37 HOH HOH . G 5 HOH B 11 711 138 HOH HOH . G 5 HOH B 12 712 100 HOH HOH . G 5 HOH B 13 713 79 HOH HOH . G 5 HOH B 14 714 67 HOH HOH . G 5 HOH B 15 715 183 HOH HOH . G 5 HOH B 16 716 126 HOH HOH . G 5 HOH B 17 717 192 HOH HOH . G 5 HOH B 18 718 83 HOH HOH . G 5 HOH B 19 719 105 HOH HOH . G 5 HOH B 20 720 94 HOH HOH . G 5 HOH B 21 721 19 HOH HOH . G 5 HOH B 22 722 68 HOH HOH . G 5 HOH B 23 723 112 HOH HOH . G 5 HOH B 24 724 98 HOH HOH . G 5 HOH B 25 725 144 HOH HOH . G 5 HOH B 26 726 54 HOH HOH . G 5 HOH B 27 727 203 HOH HOH . G 5 HOH B 28 728 82 HOH HOH . G 5 HOH B 29 729 218 HOH HOH . G 5 HOH B 30 730 43 HOH HOH . G 5 HOH B 31 731 143 HOH HOH . G 5 HOH B 32 732 76 HOH HOH . G 5 HOH B 33 733 190 HOH HOH . G 5 HOH B 34 734 189 HOH HOH . G 5 HOH B 35 735 99 HOH HOH . G 5 HOH B 36 736 58 HOH HOH . G 5 HOH B 37 737 17 HOH HOH . G 5 HOH B 38 738 174 HOH HOH . G 5 HOH B 39 739 25 HOH HOH . G 5 HOH B 40 740 87 HOH HOH . G 5 HOH B 41 741 50 HOH HOH . G 5 HOH B 42 742 102 HOH HOH . G 5 HOH B 43 743 5 HOH HOH . G 5 HOH B 44 744 128 HOH HOH . G 5 HOH B 45 745 127 HOH HOH . G 5 HOH B 46 746 65 HOH HOH . G 5 HOH B 47 747 193 HOH HOH . G 5 HOH B 48 748 26 HOH HOH . G 5 HOH B 49 749 135 HOH HOH . G 5 HOH B 50 750 75 HOH HOH . G 5 HOH B 51 751 48 HOH HOH . G 5 HOH B 52 752 70 HOH HOH . G 5 HOH B 53 753 56 HOH HOH . G 5 HOH B 54 754 154 HOH HOH . G 5 HOH B 55 755 188 HOH HOH . G 5 HOH B 56 756 77 HOH HOH . G 5 HOH B 57 757 28 HOH HOH . G 5 HOH B 58 758 89 HOH HOH . G 5 HOH B 59 759 131 HOH HOH . G 5 HOH B 60 760 29 HOH HOH . G 5 HOH B 61 761 9 HOH HOH . G 5 HOH B 62 762 13 HOH HOH . G 5 HOH B 63 763 38 HOH HOH . G 5 HOH B 64 764 156 HOH HOH . G 5 HOH B 65 765 222 HOH HOH . G 5 HOH B 66 766 130 HOH HOH . G 5 HOH B 67 767 148 HOH HOH . G 5 HOH B 68 768 41 HOH HOH . G 5 HOH B 69 769 8 HOH HOH . G 5 HOH B 70 770 134 HOH HOH . G 5 HOH B 71 771 90 HOH HOH . G 5 HOH B 72 772 1 HOH HOH . G 5 HOH B 73 773 137 HOH HOH . G 5 HOH B 74 774 157 HOH HOH . G 5 HOH B 75 775 164 HOH HOH . G 5 HOH B 76 776 115 HOH HOH . G 5 HOH B 77 777 223 HOH HOH . G 5 HOH B 78 778 215 HOH HOH . G 5 HOH B 79 779 147 HOH HOH . G 5 HOH B 80 780 3 HOH HOH . G 5 HOH B 81 781 153 HOH HOH . G 5 HOH B 82 782 225 HOH HOH . G 5 HOH B 83 783 216 HOH HOH . G 5 HOH B 84 784 219 HOH HOH . G 5 HOH B 85 785 173 HOH HOH . G 5 HOH B 86 786 111 HOH HOH . G 5 HOH B 87 787 221 HOH HOH . G 5 HOH B 88 788 187 HOH HOH . G 5 HOH B 89 789 167 HOH HOH . G 5 HOH B 90 790 217 HOH HOH . G 5 HOH B 91 791 158 HOH HOH . G 5 HOH B 92 792 120 HOH HOH . G 5 HOH B 93 793 220 HOH HOH . G 5 HOH B 94 794 122 HOH HOH . G 5 HOH B 95 795 191 HOH HOH . G 5 HOH B 96 796 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 61.801 _atom_site.Cartn_y -20.232 _atom_site.Cartn_z 13.853 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 702 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #