data_5WB2 # _model_server_result.job_id IZwM9JmCf3bKHsYdPXQsJA _model_server_result.datetime_utc '2025-04-27 18:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1204}' # _entry.id 5WB2 # _exptl.entry_id 5WB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WB2 _cell.length_a 47.17 _cell.length_b 128.94 _cell.length_c 127.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 23 1_555 A SG CYS 270 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 111 A CYS 104 1_555 A SG CYS 180 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 357 A CYS 1022 1_555 A SG CYS 430 A CYS 1095 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 8 B CYS 8 1_555 B SG CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 12 B CYS 12 1_555 B SG CYS 50 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 22 D CYS 22 1_555 C SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 C SG CYS 50 D CYS 50 1_555 C SG CYS 110 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C GLN 72 A GLN 65 1_555 A N YCM 73 A YCM 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C YCM 73 A YCM 66 1_555 A N SER 74 A SER 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C HIS 310 A HIS 303 1_555 A N YCM 311 A YCM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C YCM 311 A YCM 304 1_555 A N LEU 312 A LEU 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C PCA 1 D PCA 1 1_555 C N LEU 2 D LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B NE2 HIS 64 B HIS 64 1_555 J ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc2 J ZN ZN . B ZN 101 1_554 C OE2 GLU 44 D GLU 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 337 n n C10 C9 OLC doub 338 n n C10 C11 OLC sing 339 n n C9 C8 OLC sing 340 n n C17 C16 OLC sing 341 z n C11 C12 OLC sing 342 n n C8 C7 OLC sing 343 n n C24 C22 OLC sing 344 n n C24 O25 OLC sing 345 n n C16 C15 OLC sing 346 n n C12 C13 OLC sing 347 n n C7 C6 OLC sing 348 n n C15 C14 OLC sing 349 n n C13 C14 OLC sing 350 n n C6 C5 OLC sing 351 n n C5 C4 OLC sing 352 n n C4 C3 OLC sing 353 n n C3 C2 OLC sing 354 n n C2 C1 OLC sing 355 n n C21 C22 OLC sing 356 n n C21 O20 OLC sing 357 n n C1 O19 OLC doub 358 n n C1 O20 OLC sing 359 n n C22 O23 OLC sing 360 n n C18 H18 OLC sing 361 n n C18 H18A OLC sing 362 n n C18 H18B OLC sing 363 n n C10 H10 OLC sing 364 n n C9 H9 OLC sing 365 n n C17 H17 OLC sing 366 n n C17 H17A OLC sing 367 n n C11 H11 OLC sing 368 n n C11 H11A OLC sing 369 n n C8 H8 OLC sing 370 n n C8 H8A OLC sing 371 n n C24 H24 OLC sing 372 n n C24 H24A OLC sing 373 n n C16 H16 OLC sing 374 n n C16 H16A OLC sing 375 n n C12 H12 OLC sing 376 n n C12 H12A OLC sing 377 n n C7 H7 OLC sing 378 n n C7 H7A OLC sing 379 n n C15 H15 OLC sing 380 n n C15 H15A OLC sing 381 n n C13 H13 OLC sing 382 n n C13 H13A OLC sing 383 n n C6 H6 OLC sing 384 n n C6 H6A OLC sing 385 n n C14 H14 OLC sing 386 n n C14 H14A OLC sing 387 n n C5 H5 OLC sing 388 n n C5 H5A OLC sing 389 n n C4 H4 OLC sing 390 n n C4 H4A OLC sing 391 n n C3 H3 OLC sing 392 n n C3 H3A OLC sing 393 n n C2 H2 OLC sing 394 n n C2 H2A OLC sing 395 n n C21 H21 OLC sing 396 n n C21 H21A OLC sing 397 n n C22 H22 OLC sing 398 n n O25 HO25 OLC sing 399 n n O23 HO23 OLC sing 400 n n # _atom_sites.entry_id 5WB2 _atom_sites.fract_transf_matrix[1][1] 0.0212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CLR A 1 1201 401 CLR CLR . E 4 CLR A 1 1202 402 CLR CLR . F 5 OLC A 1 1203 403 OLC OLC . G 5 OLC A 1 1204 404 OLC OLC . H 5 OLC A 1 1205 405 OLC OLC . I 5 OLC A 1 1206 406 OLC OLC . J 6 ZN B 1 101 2 ZN ZN . K 7 MES B 1 102 1 MES MES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . G 5 1.861 18.807 70.937 1 99.27 ? C18 OLC 1204 A 1 HETATM 2 C C10 OLC . . . G 5 3.746 20.52 61.658 1 82.49 ? C10 OLC 1204 A 1 HETATM 3 C C9 OLC . . . G 5 3.217 21.322 60.732 1 73.74 ? C9 OLC 1204 A 1 HETATM 4 C C17 OLC . . . G 5 2.456 19.887 70.048 1 99.63 ? C17 OLC 1204 A 1 HETATM 5 C C11 OLC . . . G 5 4.217 21.038 62.978 1 83.22 ? C11 OLC 1204 A 1 HETATM 6 C C8 OLC . . . G 5 3.066 22.789 60.951 1 68.7 ? C8 OLC 1204 A 1 HETATM 7 C C24 OLC . . . G 5 2.492 24.324 48.558 1 86.74 ? C24 OLC 1204 A 1 HETATM 8 C C16 OLC . . . G 5 3.114 19.248 68.832 1 89.92 ? C16 OLC 1204 A 1 HETATM 9 C C12 OLC . . . G 5 4.024 19.98 64.058 1 72.01 ? C12 OLC 1204 A 1 HETATM 10 C C7 OLC . . . G 5 3.583 23.557 59.744 1 60.04 ? C7 OLC 1204 A 1 HETATM 11 C C15 OLC . . . G 5 3.605 20.298 67.843 1 90.25 ? C15 OLC 1204 A 1 HETATM 12 C C13 OLC . . . G 5 4.161 20.636 65.428 1 76.82 ? C13 OLC 1204 A 1 HETATM 13 C C6 OLC . . . G 5 2.399 24.072 58.938 1 67.35 ? C6 OLC 1204 A 1 HETATM 14 C C14 OLC . . . G 5 3.903 19.609 66.518 1 91.91 ? C14 OLC 1204 A 1 HETATM 15 C C5 OLC . . . G 5 2.895 24.82 57.712 1 63.71 ? C5 OLC 1204 A 1 HETATM 16 C C4 OLC . . . G 5 1.73 25.142 56.783 1 69.96 ? C4 OLC 1204 A 1 HETATM 17 C C3 OLC . . . G 5 2.293 25.634 55.462 1 87.18 ? C3 OLC 1204 A 1 HETATM 18 C C2 OLC . . . G 5 1.322 25.39 54.307 1 83.47 ? C2 OLC 1204 A 1 HETATM 19 C C21 OLC . . . G 5 2.37 25.123 50.911 1 108.98 ? C21 OLC 1204 A 1 HETATM 20 C C1 OLC . . . G 5 2.014 25.873 53.079 1 95.97 ? C1 OLC 1204 A 1 HETATM 21 C C22 OLC . . . G 5 1.52 24.611 49.733 1 96.35 ? C22 OLC 1204 A 1 HETATM 22 O O19 OLC . . . G 5 3.023 26.563 53.029 1 101.68 ? O19 OLC 1204 A 1 HETATM 23 O O25 OLC . . . G 5 2.387 22.949 48.34 1 80.3 ? O25 OLC 1204 A 1 HETATM 24 O O23 OLC . . . G 5 0.795 23.487 50.089 1 105.76 ? O23 OLC 1204 A 1 HETATM 25 O O20 OLC . . . G 5 1.435 25.481 51.912 1 105.1 ? O20 OLC 1204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 25 #