data_5WBC # _model_server_result.job_id kuZQVdkyNJQx79DMif2rZw _model_server_result.datetime_utc '2025-06-26 19:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5WBC # _exptl.entry_id 5WBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 592.213 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[CuII(biot-et-dpea)]2+' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WBC _cell.length_a 57.58 _cell.length_b 57.58 _cell.length_c 183.71 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.58 57.58 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.58 57.58 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H36 Cu N6 O4 S' _chem_comp.formula_weight 592.213 _chem_comp.id CU6 _chem_comp.mon_nstd_flag . _chem_comp.name '[CuII(biot-et-dpea)]2+' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 CU6 doub 76 n y C17 C16 CU6 sing 77 n y C18 C19 CU6 sing 78 n y C16 N5 CU6 doub 79 n y C19 C15 CU6 doub 80 n y N5 C15 CU6 sing 81 n y N5 CU1 CU6 sing 82 n n C23 C24 CU6 doub 83 n y C23 N6 CU6 sing 84 n y C15 C14 CU6 sing 85 n n CU1 N6 CU6 sing 86 n n CU1 N4 CU6 sing 87 n n C24 C25 CU6 sing 88 n y N6 C22 CU6 doub 89 n y C14 C13 CU6 sing 90 n n C25 C26 CU6 doub 91 n y C22 C26 CU6 sing 92 n y C22 C21 CU6 sing 93 n n N4 C12 CU6 sing 94 n n N4 C13 CU6 sing 95 n n N4 C20 CU6 sing 96 n n C12 C11 CU6 sing 97 n n C21 C20 CU6 sing 98 n n O2 C10 CU6 doub 99 n n C10 N3 CU6 sing 100 n n C10 C9 CU6 sing 101 n n C11 N3 CU6 sing 102 n n C9 C8 CU6 sing 103 n n C8 C7 CU6 sing 104 n n C7 C6 CU6 sing 105 n n C6 C5 CU6 sing 106 n n C5 C4 CU6 sing 107 n n C5 S1 CU6 sing 108 n n N2 C4 CU6 sing 109 n n N2 C1 CU6 sing 110 n n C4 C2 CU6 sing 111 n n S1 C3 CU6 sing 112 n n C1 O1 CU6 doub 113 n n C1 N1 CU6 sing 114 n n C2 C3 CU6 sing 115 n n C2 N1 CU6 sing 116 n n CU1 O4 CU6 sing 117 n n CU1 O3 CU6 sing 118 n n C2 H1 CU6 sing 119 n n C3 H2 CU6 sing 120 n n C3 H3 CU6 sing 121 n n C4 H4 CU6 sing 122 n n C5 H5 CU6 sing 123 n n C6 H6 CU6 sing 124 n n C6 H7 CU6 sing 125 n n C7 H8 CU6 sing 126 n n C7 H9 CU6 sing 127 n n C8 H10 CU6 sing 128 n n C8 H11 CU6 sing 129 n n C9 H12 CU6 sing 130 n n C9 H13 CU6 sing 131 n n C11 H14 CU6 sing 132 n n C11 H15 CU6 sing 133 n n C13 H16 CU6 sing 134 n n C13 H17 CU6 sing 135 n n C14 H18 CU6 sing 136 n n C14 H19 CU6 sing 137 n n C16 H20 CU6 sing 138 n n C17 H21 CU6 sing 139 n n C19 H22 CU6 sing 140 n n C20 H23 CU6 sing 141 n n C20 H24 CU6 sing 142 n n C25 H25 CU6 sing 143 n n C26 H26 CU6 sing 144 n n C23 H27 CU6 sing 145 n n C24 H28 CU6 sing 146 n n C21 H29 CU6 sing 147 n n C21 H30 CU6 sing 148 n n C18 H31 CU6 sing 149 n n C12 H32 CU6 sing 150 n n C12 H33 CU6 sing 151 n n N3 H34 CU6 sing 152 n n N2 H35 CU6 sing 153 n n N1 H36 CU6 sing 154 n n # _atom_sites.entry_id 5WBC _atom_sites.fract_transf_matrix[1][1] 0.017367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU6 A 1 201 1 CU6 CU6 . C 3 GOL A 1 202 100 GOL GOL . D 4 ACT A 1 203 101 ACT ACT . E 5 HOH A 1 301 62 HOH HOH . E 5 HOH A 2 302 64 HOH HOH . E 5 HOH A 3 303 59 HOH HOH . E 5 HOH A 4 304 42 HOH HOH . E 5 HOH A 5 305 23 HOH HOH . E 5 HOH A 6 306 40 HOH HOH . E 5 HOH A 7 307 34 HOH HOH . E 5 HOH A 8 308 2 HOH HOH . E 5 HOH A 9 309 66 HOH HOH . E 5 HOH A 10 310 9 HOH HOH . E 5 HOH A 11 311 32 HOH HOH . E 5 HOH A 12 312 4 HOH HOH . E 5 HOH A 13 313 47 HOH HOH . E 5 HOH A 14 314 63 HOH HOH . E 5 HOH A 15 315 60 HOH HOH . E 5 HOH A 16 316 5 HOH HOH . E 5 HOH A 17 317 11 HOH HOH . E 5 HOH A 18 318 68 HOH HOH . E 5 HOH A 19 319 50 HOH HOH . E 5 HOH A 20 320 51 HOH HOH . E 5 HOH A 21 321 12 HOH HOH . E 5 HOH A 22 322 8 HOH HOH . E 5 HOH A 23 323 24 HOH HOH . E 5 HOH A 24 324 46 HOH HOH . E 5 HOH A 25 325 22 HOH HOH . E 5 HOH A 26 326 19 HOH HOH . E 5 HOH A 27 327 30 HOH HOH . E 5 HOH A 28 328 37 HOH HOH . E 5 HOH A 29 329 31 HOH HOH . E 5 HOH A 30 330 6 HOH HOH . E 5 HOH A 31 331 65 HOH HOH . E 5 HOH A 32 332 61 HOH HOH . E 5 HOH A 33 333 1 HOH HOH . E 5 HOH A 34 334 18 HOH HOH . E 5 HOH A 35 335 49 HOH HOH . E 5 HOH A 36 336 15 HOH HOH . E 5 HOH A 37 337 29 HOH HOH . E 5 HOH A 38 338 39 HOH HOH . E 5 HOH A 39 339 10 HOH HOH . E 5 HOH A 40 340 35 HOH HOH . E 5 HOH A 41 341 3 HOH HOH . E 5 HOH A 42 342 52 HOH HOH . E 5 HOH A 43 343 33 HOH HOH . E 5 HOH A 44 344 43 HOH HOH . E 5 HOH A 45 345 20 HOH HOH . E 5 HOH A 46 346 13 HOH HOH . E 5 HOH A 47 347 14 HOH HOH . E 5 HOH A 48 348 28 HOH HOH . E 5 HOH A 49 349 7 HOH HOH . E 5 HOH A 50 350 38 HOH HOH . E 5 HOH A 51 351 44 HOH HOH . E 5 HOH A 52 352 17 HOH HOH . E 5 HOH A 53 353 41 HOH HOH . E 5 HOH A 54 354 16 HOH HOH . E 5 HOH A 55 355 25 HOH HOH . E 5 HOH A 56 356 48 HOH HOH . E 5 HOH A 57 357 21 HOH HOH . E 5 HOH A 58 358 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CU6 . . . B 2 15.425 29.413 -8.47 1 11.24 ? C1 CU6 201 A 1 HETATM 2 C C2 CU6 . . . B 2 17.784 29.406 -8.179 1 10.54 ? C2 CU6 201 A 1 HETATM 3 C C3 CU6 . . . B 2 18.522 28.14 -7.606 1 12.42 ? C3 CU6 201 A 1 HETATM 4 C C4 CU6 . . . B 2 17.411 29.112 -9.67 1 11.77 ? C4 CU6 201 A 1 HETATM 5 C C5 CU6 . . . B 2 18.08 27.807 -10.064 1 11.55 ? C5 CU6 201 A 1 HETATM 6 C C6 CU6 . . . B 2 17.507 27.117 -11.368 1 11.93 ? C6 CU6 201 A 1 HETATM 7 C C7 CU6 . . . B 2 18.338 25.966 -11.958 1 11.51 ? C7 CU6 201 A 1 HETATM 8 C C8 CU6 . . . B 2 17.581 25.341 -13.177 1 11.95 ? C8 CU6 201 A 1 HETATM 9 C C9 CU6 . . . B 2 18.383 24.229 -13.838 1 13.04 ? C9 CU6 201 A 1 HETATM 10 C C11 CU6 . . . B 2 22.157 24.744 -14.257 1 21.5 ? C11 CU6 201 A 1 HETATM 11 C C13 CU6 . . . B 2 23.497 27.021 -15.593 1 34.35 ? C13 CU6 201 A 1 HETATM 12 C C14 CU6 . . . B 2 22.407 27.718 -16.456 1 33.5 ? C14 CU6 201 A 1 HETATM 13 C C16 CU6 . . . B 2 22.458 25.939 -19.975 1 49.35 ? C16 CU6 201 A 1 HETATM 14 C C17 CU6 . . . B 2 21.379 26.611 -20.654 1 47.47 ? C17 CU6 201 A 1 HETATM 15 C C19 CU6 . . . B 2 21.007 28.03 -18.616 1 40.84 ? C19 CU6 201 A 1 HETATM 16 C C20 CU6 . . . B 2 24.988 25.418 -14.692 1 36.72 ? C20 CU6 201 A 1 HETATM 17 C C22 CU6 . . . B 2 26.93 24.622 -15.969 1 48.43 ? C22 CU6 201 A 1 HETATM 18 C C25 CU6 . . . B 2 28.588 22.886 -16.411 1 53.93 ? C25 CU6 201 A 1 HETATM 19 C C26 CU6 . . . B 2 28.156 23.916 -15.59 1 57.07 ? C26 CU6 201 A 1 HETATM 20 CU CU1 CU6 . . . B 2 24.364 25.316 -17.738 1 41.88 ? CU1 CU6 201 A 1 HETATM 21 N N6 CU6 . . . B 2 26.113 24.309 -17.194 1 58.3 ? N6 CU6 201 A 1 HETATM 22 C C23 CU6 . . . B 2 26.67 23.224 -17.98 1 69.69 ? C23 CU6 201 A 1 HETATM 23 C C24 CU6 . . . B 2 27.867 22.569 -17.582 1 68.91 ? C24 CU6 201 A 1 HETATM 24 C C21 CU6 . . . B 2 26.435 25.754 -15.043 1 50.22 ? C21 CU6 201 A 1 HETATM 25 N N4 CU6 . . . B 2 23.981 25.591 -15.716 1 34.88 ? N4 CU6 201 A 1 HETATM 26 N N5 CU6 . . . B 2 22.819 26.302 -18.589 1 46.21 ? N5 CU6 201 A 1 HETATM 27 C C18 CU6 . . . B 2 20.663 27.66 -19.976 1 45.2 ? C18 CU6 201 A 1 HETATM 28 C C15 CU6 . . . B 2 22.076 27.334 -17.91 1 32.62 ? C15 CU6 201 A 1 HETATM 29 C C12 CU6 . . . B 2 22.759 24.729 -15.597 1 25.09 ? C12 CU6 201 A 1 HETATM 30 N N3 CU6 . . . B 2 20.881 24.044 -13.989 1 16.65 ? N3 CU6 201 A 1 HETATM 31 C C10 CU6 . . . B 2 19.716 24.689 -14.281 1 14.28 ? C10 CU6 201 A 1 HETATM 32 O O2 CU6 . . . B 2 19.777 25.887 -14.904 1 16.65 ? O2 CU6 201 A 1 HETATM 33 N N2 CU6 . . . B 2 15.979 29.078 -9.706 1 11.6 ? N2 CU6 201 A 1 HETATM 34 S S1 CU6 . . . B 2 17.922 26.727 -8.584 1 13.45 ? S1 CU6 201 A 1 HETATM 35 N N1 CU6 . . . B 2 16.483 29.458 -7.556 1 13.66 ? N1 CU6 201 A 1 HETATM 36 O O1 CU6 . . . B 2 14.125 29.32 -8.225 1 13.96 ? O1 CU6 201 A 1 HETATM 37 O O3 CU6 . . . B 2 23.112 23.21 -18.312 1 45.54 ? O3 CU6 201 A 1 HETATM 38 O O4 CU6 . . . B 2 25.722 26.744 -19.205 1 56.09 ? O4 CU6 201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 38 #