data_5WBC
#
_model_server_result.job_id            6mE7QMaf4tsvrKKmwIstYg 
_model_server_result.datetime_utc      '2024-11-17 06:27:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5WBC 
#
_exptl.entry_id    5WBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WBC 
_cell.length_a            57.58 
_cell.length_b            57.58 
_cell.length_c            183.71 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.58 57.58 0 
3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.58 57.58 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 201 n n 
C1 C2 GOL sing 202 n n 
C1 H11 GOL sing 203 n n 
C1 H12 GOL sing 204 n n 
O1 HO1 GOL sing 205 n n 
C2 O2 GOL sing 206 n n 
C2 C3 GOL sing 207 n n 
C2 H2 GOL sing 208 n n 
O2 HO2 GOL sing 209 n n 
C3 O3 GOL sing 210 n n 
C3 H31 GOL sing 211 n n 
C3 H32 GOL sing 212 n n 
O3 HO3 GOL sing 213 n n 
#
_atom_sites.entry_id                     5WBC 
_atom_sites.fract_transf_matrix[1][1]    0.017367 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017367 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005443 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU6 A 1 201 1 CU6 CU6 . 
C 3 GOL A 1 202 100 GOL GOL . 
D 4 ACT A 1 203 101 ACT ACT . 
E 5 HOH A 1 301 62 HOH HOH . 
E 5 HOH A 2 302 64 HOH HOH . 
E 5 HOH A 3 303 59 HOH HOH . 
E 5 HOH A 4 304 42 HOH HOH . 
E 5 HOH A 5 305 23 HOH HOH . 
E 5 HOH A 6 306 40 HOH HOH . 
E 5 HOH A 7 307 34 HOH HOH . 
E 5 HOH A 8 308 2 HOH HOH . 
E 5 HOH A 9 309 66 HOH HOH . 
E 5 HOH A 10 310 9 HOH HOH . 
E 5 HOH A 11 311 32 HOH HOH . 
E 5 HOH A 12 312 4 HOH HOH . 
E 5 HOH A 13 313 47 HOH HOH . 
E 5 HOH A 14 314 63 HOH HOH . 
E 5 HOH A 15 315 60 HOH HOH . 
E 5 HOH A 16 316 5 HOH HOH . 
E 5 HOH A 17 317 11 HOH HOH . 
E 5 HOH A 18 318 68 HOH HOH . 
E 5 HOH A 19 319 50 HOH HOH . 
E 5 HOH A 20 320 51 HOH HOH . 
E 5 HOH A 21 321 12 HOH HOH . 
E 5 HOH A 22 322 8 HOH HOH . 
E 5 HOH A 23 323 24 HOH HOH . 
E 5 HOH A 24 324 46 HOH HOH . 
E 5 HOH A 25 325 22 HOH HOH . 
E 5 HOH A 26 326 19 HOH HOH . 
E 5 HOH A 27 327 30 HOH HOH . 
E 5 HOH A 28 328 37 HOH HOH . 
E 5 HOH A 29 329 31 HOH HOH . 
E 5 HOH A 30 330 6 HOH HOH . 
E 5 HOH A 31 331 65 HOH HOH . 
E 5 HOH A 32 332 61 HOH HOH . 
E 5 HOH A 33 333 1 HOH HOH . 
E 5 HOH A 34 334 18 HOH HOH . 
E 5 HOH A 35 335 49 HOH HOH . 
E 5 HOH A 36 336 15 HOH HOH . 
E 5 HOH A 37 337 29 HOH HOH . 
E 5 HOH A 38 338 39 HOH HOH . 
E 5 HOH A 39 339 10 HOH HOH . 
E 5 HOH A 40 340 35 HOH HOH . 
E 5 HOH A 41 341 3 HOH HOH . 
E 5 HOH A 42 342 52 HOH HOH . 
E 5 HOH A 43 343 33 HOH HOH . 
E 5 HOH A 44 344 43 HOH HOH . 
E 5 HOH A 45 345 20 HOH HOH . 
E 5 HOH A 46 346 13 HOH HOH . 
E 5 HOH A 47 347 14 HOH HOH . 
E 5 HOH A 48 348 28 HOH HOH . 
E 5 HOH A 49 349 7 HOH HOH . 
E 5 HOH A 50 350 38 HOH HOH . 
E 5 HOH A 51 351 44 HOH HOH . 
E 5 HOH A 52 352 17 HOH HOH . 
E 5 HOH A 53 353 41 HOH HOH . 
E 5 HOH A 54 354 16 HOH HOH . 
E 5 HOH A 55 355 25 HOH HOH . 
E 5 HOH A 56 356 48 HOH HOH . 
E 5 HOH A 57 357 21 HOH HOH . 
E 5 HOH A 58 358 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 19.296 31.058 -18.344 1 36.45 ? C1 GOL 202 A 1 
HETATM 2 O O1 GOL . . . C 3 18.446 30.253 -19.22 1 46.05 ? O1 GOL 202 A 1 
HETATM 3 C C2 GOL . . . C 3 18.461 32.278 -18.261 1 40.01 ? C2 GOL 202 A 1 
HETATM 4 O O2 GOL . . . C 3 17.209 31.891 -17.661 1 34.54 ? O2 GOL 202 A 1 
HETATM 5 C C3 GOL . . . C 3 19.25 33.345 -17.435 1 48.93 ? C3 GOL 202 A 1 
HETATM 6 O O3 GOL . . . C 3 18.726 33.881 -16.196 1 32.46 ? O3 GOL 202 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#