data_5WBD # _model_server_result.job_id XPM9qRdJcWdtWLNQaqmTtQ _model_server_result.datetime_utc '2024-11-17 16:47:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5WBD # _exptl.entry_id 5WBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WBD _cell.length_a 57.51 _cell.length_b 57.51 _cell.length_c 174.81 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.51 57.51 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.51 57.51 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5WBD _atom_sites.fract_transf_matrix[1][1] 0.017388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SI7 A 1 201 1 SI7 SI7 . C 3 ACT A 1 202 1 ACT ACT . D 4 HOH A 1 301 47 HOH HOH . D 4 HOH A 2 302 86 HOH HOH . D 4 HOH A 3 303 32 HOH HOH . D 4 HOH A 4 304 48 HOH HOH . D 4 HOH A 5 305 2 HOH HOH . D 4 HOH A 6 306 28 HOH HOH . D 4 HOH A 7 307 81 HOH HOH . D 4 HOH A 8 308 17 HOH HOH . D 4 HOH A 9 309 3 HOH HOH . D 4 HOH A 10 310 45 HOH HOH . D 4 HOH A 11 311 50 HOH HOH . D 4 HOH A 12 312 57 HOH HOH . D 4 HOH A 13 313 5 HOH HOH . D 4 HOH A 14 314 69 HOH HOH . D 4 HOH A 15 315 63 HOH HOH . D 4 HOH A 16 316 25 HOH HOH . D 4 HOH A 17 317 34 HOH HOH . D 4 HOH A 18 318 49 HOH HOH . D 4 HOH A 19 319 56 HOH HOH . D 4 HOH A 20 320 67 HOH HOH . D 4 HOH A 21 321 54 HOH HOH . D 4 HOH A 22 322 16 HOH HOH . D 4 HOH A 23 323 40 HOH HOH . D 4 HOH A 24 324 39 HOH HOH . D 4 HOH A 25 325 12 HOH HOH . D 4 HOH A 26 326 30 HOH HOH . D 4 HOH A 27 327 98 HOH HOH . D 4 HOH A 28 328 6 HOH HOH . D 4 HOH A 29 329 62 HOH HOH . D 4 HOH A 30 330 13 HOH HOH . D 4 HOH A 31 331 96 HOH HOH . D 4 HOH A 32 332 33 HOH HOH . D 4 HOH A 33 333 1 HOH HOH . D 4 HOH A 34 334 18 HOH HOH . D 4 HOH A 35 335 37 HOH HOH . D 4 HOH A 36 336 52 HOH HOH . D 4 HOH A 37 337 61 HOH HOH . D 4 HOH A 38 338 68 HOH HOH . D 4 HOH A 39 339 78 HOH HOH . D 4 HOH A 40 340 11 HOH HOH . D 4 HOH A 41 341 71 HOH HOH . D 4 HOH A 42 342 7 HOH HOH . D 4 HOH A 43 343 21 HOH HOH . D 4 HOH A 44 344 92 HOH HOH . D 4 HOH A 45 345 31 HOH HOH . D 4 HOH A 46 346 26 HOH HOH . D 4 HOH A 47 347 60 HOH HOH . D 4 HOH A 48 348 64 HOH HOH . D 4 HOH A 49 349 8 HOH HOH . D 4 HOH A 50 350 14 HOH HOH . D 4 HOH A 51 351 38 HOH HOH . D 4 HOH A 52 352 70 HOH HOH . D 4 HOH A 53 353 19 HOH HOH . D 4 HOH A 54 354 72 HOH HOH . D 4 HOH A 55 355 75 HOH HOH . D 4 HOH A 56 356 24 HOH HOH . D 4 HOH A 57 357 83 HOH HOH . D 4 HOH A 58 358 20 HOH HOH . D 4 HOH A 59 359 23 HOH HOH . D 4 HOH A 60 360 43 HOH HOH . D 4 HOH A 61 361 9 HOH HOH . D 4 HOH A 62 362 10 HOH HOH . D 4 HOH A 63 363 97 HOH HOH . D 4 HOH A 64 364 51 HOH HOH . D 4 HOH A 65 365 53 HOH HOH . D 4 HOH A 66 366 90 HOH HOH . D 4 HOH A 67 367 41 HOH HOH . D 4 HOH A 68 368 82 HOH HOH . D 4 HOH A 69 369 36 HOH HOH . D 4 HOH A 70 370 74 HOH HOH . D 4 HOH A 71 371 27 HOH HOH . D 4 HOH A 72 372 29 HOH HOH . D 4 HOH A 73 373 87 HOH HOH . D 4 HOH A 74 374 46 HOH HOH . D 4 HOH A 75 375 15 HOH HOH . D 4 HOH A 76 376 89 HOH HOH . D 4 HOH A 77 377 22 HOH HOH . D 4 HOH A 78 378 59 HOH HOH . D 4 HOH A 79 379 4 HOH HOH . D 4 HOH A 80 380 66 HOH HOH . D 4 HOH A 81 381 84 HOH HOH . D 4 HOH A 82 382 42 HOH HOH . D 4 HOH A 83 383 44 HOH HOH . D 4 HOH A 84 384 55 HOH HOH . D 4 HOH A 85 385 35 HOH HOH . D 4 HOH A 86 386 80 HOH HOH . D 4 HOH A 87 387 77 HOH HOH . D 4 HOH A 88 388 95 HOH HOH . D 4 HOH A 89 389 85 HOH HOH . D 4 HOH A 90 390 73 HOH HOH . D 4 HOH A 91 391 94 HOH HOH . D 4 HOH A 92 392 58 HOH HOH . D 4 HOH A 93 393 76 HOH HOH . D 4 HOH A 94 394 65 HOH HOH . D 4 HOH A 95 395 88 HOH HOH . D 4 HOH A 96 396 79 HOH HOH . D 4 HOH A 97 397 93 HOH HOH . D 4 HOH A 98 398 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . C 3 9.91 31.151 -25.244 1 34.63 ? C ACT 202 A 1 HETATM 2 O O ACT . . . C 3 9.086 31.033 -26.186 1 29.36 ? O ACT 202 A 1 HETATM 3 O OXT ACT . . . C 3 10.548 30.177 -24.788 1 34.96 ? OXT ACT 202 A 1 HETATM 4 C CH3 ACT . . . C 3 10.145 32.498 -24.626 1 38.27 ? CH3 ACT 202 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #