data_5WBO
#
_model_server_result.job_id            Nozk_GPJRvhxWpAQCSpLYQ 
_model_server_result.datetime_utc      '2024-12-21 15:50:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wbo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5WBO 
#
_exptl.entry_id    5WBO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              217.267 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4,6-dimethyl-2-(morpholin-4-yl)pyridine-3-carbonitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WBO 
_cell.length_a            82.98 
_cell.length_b            85.9 
_cell.length_c            138.35 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WBO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C12 H15 N3 O' 
_chem_comp.formula_weight    217.267 
_chem_comp.id                A1Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4,6-dimethyl-2-(morpholin-4-yl)pyridine-3-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C9 A1Y sing 1 n n 
O1 C10 A1Y sing 2 n n 
C9 C8 A1Y sing 3 n n 
C10 C11 A1Y sing 4 n n 
C8 N3 A1Y sing 5 n n 
C11 N3 A1Y sing 6 n n 
N3 C5 A1Y sing 7 n n 
C5 N1 A1Y doub 8 n y 
C5 C6 A1Y sing 9 n y 
N1 C4 A1Y sing 10 n y 
N2 C7 A1Y trip 11 n n 
C7 C6 A1Y sing 12 n n 
C6 C2 A1Y doub 13 n y 
C4 C12 A1Y sing 14 n n 
C4 C3 A1Y doub 15 n y 
C2 C3 A1Y sing 16 n y 
C2 C1 A1Y sing 17 n n 
C9 H7 A1Y sing 18 n n 
C9 H8 A1Y sing 19 n n 
C8 H5 A1Y sing 20 n n 
C8 H6 A1Y sing 21 n n 
C1 H3 A1Y sing 22 n n 
C1 H2 A1Y sing 23 n n 
C1 H1 A1Y sing 24 n n 
C3 H4 A1Y sing 25 n n 
C10 H10 A1Y sing 26 n n 
C10 H9 A1Y sing 27 n n 
C11 H11 A1Y sing 28 n n 
C11 H12 A1Y sing 29 n n 
C12 H14 A1Y sing 30 n n 
C12 H13 A1Y sing 31 n n 
C12 H15 A1Y sing 32 n n 
#
_atom_sites.entry_id                     5WBO 
_atom_sites.fract_transf_matrix[1][1]    0.012051 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007228 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1Y A 1 301 1 A1Y PFE . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 4 CIT A 1 303 2 CIT CIT . 
F 2 A1Y B 1 301 2 A1Y PFE . 
G 3 SO4 B 1 302 2 SO4 SO4 . 
H 3 SO4 B 1 303 3 SO4 SO4 . 
I 4 CIT B 1 304 1 CIT CIT . 
J 5 GOL B 1 305 1 GOL GOL . 
K 6 HOH A 1 401 82 HOH HOH . 
K 6 HOH A 2 402 103 HOH HOH . 
K 6 HOH A 3 403 31 HOH HOH . 
K 6 HOH A 4 404 114 HOH HOH . 
K 6 HOH A 5 405 90 HOH HOH . 
K 6 HOH A 6 406 83 HOH HOH . 
K 6 HOH A 7 407 84 HOH HOH . 
K 6 HOH A 8 408 29 HOH HOH . 
K 6 HOH A 9 409 81 HOH HOH . 
K 6 HOH A 10 410 115 HOH HOH . 
K 6 HOH A 11 411 17 HOH HOH . 
K 6 HOH A 12 412 59 HOH HOH . 
K 6 HOH A 13 413 13 HOH HOH . 
K 6 HOH A 14 414 134 HOH HOH . 
K 6 HOH A 15 415 113 HOH HOH . 
K 6 HOH A 16 416 10 HOH HOH . 
K 6 HOH A 17 417 77 HOH HOH . 
K 6 HOH A 18 418 97 HOH HOH . 
K 6 HOH A 19 419 57 HOH HOH . 
K 6 HOH A 20 420 131 HOH HOH . 
K 6 HOH A 21 421 25 HOH HOH . 
K 6 HOH A 22 422 120 HOH HOH . 
K 6 HOH A 23 423 14 HOH HOH . 
K 6 HOH A 24 424 96 HOH HOH . 
K 6 HOH A 25 425 136 HOH HOH . 
K 6 HOH A 26 426 80 HOH HOH . 
K 6 HOH A 27 427 91 HOH HOH . 
K 6 HOH A 28 428 151 HOH HOH . 
K 6 HOH A 29 429 30 HOH HOH . 
K 6 HOH A 30 430 74 HOH HOH . 
K 6 HOH A 31 431 36 HOH HOH . 
K 6 HOH A 32 432 42 HOH HOH . 
K 6 HOH A 33 433 138 HOH HOH . 
K 6 HOH A 34 434 1 HOH HOH . 
K 6 HOH A 35 435 64 HOH HOH . 
K 6 HOH A 36 436 32 HOH HOH . 
K 6 HOH A 37 437 132 HOH HOH . 
K 6 HOH A 38 438 75 HOH HOH . 
K 6 HOH A 39 439 72 HOH HOH . 
K 6 HOH A 40 440 130 HOH HOH . 
K 6 HOH A 41 441 37 HOH HOH . 
K 6 HOH A 42 442 127 HOH HOH . 
K 6 HOH A 43 443 5 HOH HOH . 
K 6 HOH A 44 444 50 HOH HOH . 
K 6 HOH A 45 445 43 HOH HOH . 
K 6 HOH A 46 446 154 HOH HOH . 
K 6 HOH A 47 447 58 HOH HOH . 
K 6 HOH A 48 448 152 HOH HOH . 
K 6 HOH A 49 449 78 HOH HOH . 
K 6 HOH A 50 450 144 HOH HOH . 
K 6 HOH A 51 451 129 HOH HOH . 
K 6 HOH A 52 452 71 HOH HOH . 
K 6 HOH A 53 453 121 HOH HOH . 
K 6 HOH A 54 454 133 HOH HOH . 
K 6 HOH A 55 455 8 HOH HOH . 
K 6 HOH A 56 456 135 HOH HOH . 
K 6 HOH A 57 457 145 HOH HOH . 
K 6 HOH A 58 458 143 HOH HOH . 
K 6 HOH A 59 459 150 HOH HOH . 
K 6 HOH A 60 460 147 HOH HOH . 
K 6 HOH A 61 461 69 HOH HOH . 
K 6 HOH A 62 462 128 HOH HOH . 
K 6 HOH A 63 463 155 HOH HOH . 
K 6 HOH A 64 464 7 HOH HOH . 
K 6 HOH A 65 465 107 HOH HOH . 
K 6 HOH A 66 466 79 HOH HOH . 
K 6 HOH A 67 467 104 HOH HOH . 
K 6 HOH A 68 468 33 HOH HOH . 
L 6 HOH B 1 401 86 HOH HOH . 
L 6 HOH B 2 402 16 HOH HOH . 
L 6 HOH B 3 403 92 HOH HOH . 
L 6 HOH B 4 404 66 HOH HOH . 
L 6 HOH B 5 405 41 HOH HOH . 
L 6 HOH B 6 406 146 HOH HOH . 
L 6 HOH B 7 407 11 HOH HOH . 
L 6 HOH B 8 408 15 HOH HOH . 
L 6 HOH B 9 409 28 HOH HOH . 
L 6 HOH B 10 410 20 HOH HOH . 
L 6 HOH B 11 411 117 HOH HOH . 
L 6 HOH B 12 412 148 HOH HOH . 
L 6 HOH B 13 413 99 HOH HOH . 
L 6 HOH B 14 414 123 HOH HOH . 
L 6 HOH B 15 415 111 HOH HOH . 
L 6 HOH B 16 416 87 HOH HOH . 
L 6 HOH B 17 417 54 HOH HOH . 
L 6 HOH B 18 418 164 HOH HOH . 
L 6 HOH B 19 419 52 HOH HOH . 
L 6 HOH B 20 420 112 HOH HOH . 
L 6 HOH B 21 421 119 HOH HOH . 
L 6 HOH B 22 422 109 HOH HOH . 
L 6 HOH B 23 423 34 HOH HOH . 
L 6 HOH B 24 424 38 HOH HOH . 
L 6 HOH B 25 425 142 HOH HOH . 
L 6 HOH B 26 426 73 HOH HOH . 
L 6 HOH B 27 427 6 HOH HOH . 
L 6 HOH B 28 428 67 HOH HOH . 
L 6 HOH B 29 429 140 HOH HOH . 
L 6 HOH B 30 430 44 HOH HOH . 
L 6 HOH B 31 431 12 HOH HOH . 
L 6 HOH B 32 432 55 HOH HOH . 
L 6 HOH B 33 433 51 HOH HOH . 
L 6 HOH B 34 434 95 HOH HOH . 
L 6 HOH B 35 435 124 HOH HOH . 
L 6 HOH B 36 436 27 HOH HOH . 
L 6 HOH B 37 437 76 HOH HOH . 
L 6 HOH B 38 438 48 HOH HOH . 
L 6 HOH B 39 439 94 HOH HOH . 
L 6 HOH B 40 440 68 HOH HOH . 
L 6 HOH B 41 441 62 HOH HOH . 
L 6 HOH B 42 442 70 HOH HOH . 
L 6 HOH B 43 443 159 HOH HOH . 
L 6 HOH B 44 444 89 HOH HOH . 
L 6 HOH B 45 445 19 HOH HOH . 
L 6 HOH B 46 446 149 HOH HOH . 
L 6 HOH B 47 447 102 HOH HOH . 
L 6 HOH B 48 448 18 HOH HOH . 
L 6 HOH B 49 449 118 HOH HOH . 
L 6 HOH B 50 450 137 HOH HOH . 
L 6 HOH B 51 451 63 HOH HOH . 
L 6 HOH B 52 452 65 HOH HOH . 
L 6 HOH B 53 453 46 HOH HOH . 
L 6 HOH B 54 454 126 HOH HOH . 
L 6 HOH B 55 455 61 HOH HOH . 
L 6 HOH B 56 456 4 HOH HOH . 
L 6 HOH B 57 457 45 HOH HOH . 
L 6 HOH B 58 458 110 HOH HOH . 
L 6 HOH B 59 459 47 HOH HOH . 
L 6 HOH B 60 460 35 HOH HOH . 
L 6 HOH B 61 461 141 HOH HOH . 
L 6 HOH B 62 462 85 HOH HOH . 
L 6 HOH B 63 463 56 HOH HOH . 
L 6 HOH B 64 464 22 HOH HOH . 
L 6 HOH B 65 465 105 HOH HOH . 
L 6 HOH B 66 466 21 HOH HOH . 
L 6 HOH B 67 467 24 HOH HOH . 
L 6 HOH B 68 468 53 HOH HOH . 
L 6 HOH B 69 469 108 HOH HOH . 
L 6 HOH B 70 470 60 HOH HOH . 
L 6 HOH B 71 471 23 HOH HOH . 
L 6 HOH B 72 472 101 HOH HOH . 
L 6 HOH B 73 473 106 HOH HOH . 
L 6 HOH B 74 474 39 HOH HOH . 
L 6 HOH B 75 475 139 HOH HOH . 
L 6 HOH B 76 476 49 HOH HOH . 
L 6 HOH B 77 477 26 HOH HOH . 
L 6 HOH B 78 478 122 HOH HOH . 
L 6 HOH B 79 479 161 HOH HOH . 
L 6 HOH B 80 480 153 HOH HOH . 
L 6 HOH B 81 481 40 HOH HOH . 
L 6 HOH B 82 482 163 HOH HOH . 
L 6 HOH B 83 483 125 HOH HOH . 
L 6 HOH B 84 484 3 HOH HOH . 
L 6 HOH B 85 485 162 HOH HOH . 
L 6 HOH B 86 486 156 HOH HOH . 
L 6 HOH B 87 487 160 HOH HOH . 
L 6 HOH B 88 488 88 HOH HOH . 
L 6 HOH B 89 489 157 HOH HOH . 
L 6 HOH B 90 490 98 HOH HOH . 
L 6 HOH B 91 491 158 HOH HOH . 
L 6 HOH B 92 492 116 HOH HOH . 
L 6 HOH B 93 493 93 HOH HOH . 
L 6 HOH B 94 494 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 A1Y . . . C 2 -3.061 -0.675 17.917 1 87.28 ? N3 A1Y 301 A 1 
HETATM 2 C C4 A1Y . . . C 2 -5.694 -0.2 20.318 1 82.64 ? C4 A1Y 301 A 1 
HETATM 3 N N2 A1Y . . . C 2 -2.194 -4.177 19.484 1 81.84 ? N2 A1Y 301 A 1 
HETATM 4 C C7 A1Y . . . C 2 -2.933 -3.301 19.529 1 82.73 ? C7 A1Y 301 A 1 
HETATM 5 C C6 A1Y . . . C 2 -3.902 -2.256 19.661 1 84.85 ? C6 A1Y 301 A 1 
HETATM 6 C C9 A1Y . . . C 2 -2.295 -1.212 15.656 1 86.46 ? C9 A1Y 301 A 1 
HETATM 7 C C8 A1Y . . . C 2 -3.223 -1.596 16.768 1 87.95 ? C8 A1Y 301 A 1 
HETATM 8 C C1 A1Y . . . C 2 -5.096 -3.853 21.274 1 84.38 ? C1 A1Y 301 A 1 
HETATM 9 C C2 A1Y . . . C 2 -4.937 -2.487 20.645 1 84.64 ? C2 A1Y 301 A 1 
HETATM 10 C C3 A1Y . . . C 2 -5.829 -1.445 20.977 1 83.09 ? C3 A1Y 301 A 1 
HETATM 11 N N1 A1Y . . . C 2 -4.767 0.04 19.365 1 83.99 ? N1 A1Y 301 A 1 
HETATM 12 C C5 A1Y . . . C 2 -3.838 -0.948 18.955 1 85.14 ? C5 A1Y 301 A 1 
HETATM 13 O O1 A1Y . . . C 2 -2.545 0.112 15.234 1 86.32 ? O1 A1Y 301 A 1 
HETATM 14 C C10 A1Y . . . C 2 -2.246 1.008 16.301 1 87.74 ? C10 A1Y 301 A 1 
HETATM 15 C C11 A1Y . . . C 2 -3.104 0.762 17.52 1 87.65 ? C11 A1Y 301 A 1 
HETATM 16 C C12 A1Y . . . C 2 -6.609 0.937 20.634 1 81.9 ? C12 A1Y 301 A 1 
HETATM 17 H H7 A1Y . . . C 2 -1.247 -1.354 15.916 1 86.55 ? H7 A1Y 301 A 1 
HETATM 18 H H8 A1Y . . . C 2 -2.48 -1.807 14.763 1 86.3 ? H8 A1Y 301 A 1 
HETATM 19 H H5 A1Y . . . C 2 -3.069 -2.641 17.03 1 88.26 ? H5 A1Y 301 A 1 
HETATM 20 H H6 A1Y . . . C 2 -4.224 -1.52 16.355 1 88.14 ? H6 A1Y 301 A 1 
HETATM 21 H H3 A1Y . . . C 2 -5.199 -4.635 20.522 1 84.15 ? H3 A1Y 301 A 1 
HETATM 22 H H2 A1Y . . . C 2 -5.974 -3.928 21.912 1 84.8 ? H2 A1Y 301 A 1 
HETATM 23 H H1 A1Y . . . C 2 -4.238 -4.113 21.893 1 84.24 ? H1 A1Y 301 A 1 
HETATM 24 H H4 A1Y . . . C 2 -6.612 -1.586 21.72 1 83.01 ? H4 A1Y 301 A 1 
HETATM 25 H H10 A1Y . . . C 2 -2.462 1.987 15.875 1 88.06 ? H10 A1Y 301 A 1 
HETATM 26 H H9 A1Y . . . C 2 -1.183 0.991 16.529 1 87.98 ? H9 A1Y 301 A 1 
HETATM 27 H H11 A1Y . . . C 2 -4.104 1.135 17.307 1 87.64 ? H11 A1Y 301 A 1 
HETATM 28 H H12 A1Y . . . C 2 -2.733 1.378 18.338 1 87.72 ? H12 A1Y 301 A 1 
HETATM 29 H H14 A1Y . . . C 2 -6.794 1.587 19.78 1 81.85 ? H14 A1Y 301 A 1 
HETATM 30 H H13 A1Y . . . C 2 -6.19 1.559 21.423 1 81.97 ? H13 A1Y 301 A 1 
HETATM 31 H H15 A1Y . . . C 2 -7.579 0.579 20.974 1 82.02 ? H15 A1Y 301 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           1228 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#