data_5WBO # _model_server_result.job_id NWDwMxqs1r-yVUliX8wR_Q _model_server_result.datetime_utc '2024-12-21 16:16:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":304}' # _entry.id 5WBO # _exptl.entry_id 5WBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WBO _cell.length_a 82.98 _cell.length_b 85.9 _cell.length_c 138.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 102 n n C1 O2 CIT sing 103 n n C1 C2 CIT sing 104 n n O2 HO2 CIT sing 105 n n C2 C3 CIT sing 106 n n C2 H21 CIT sing 107 n n C2 H22 CIT sing 108 n n C3 O7 CIT sing 109 n n C3 C4 CIT sing 110 n n C3 C6 CIT sing 111 n n O7 HO7 CIT sing 112 n n C4 C5 CIT sing 113 n n C4 H41 CIT sing 114 n n C4 H42 CIT sing 115 n n C5 O3 CIT doub 116 n n C5 O4 CIT sing 117 n n O4 HO4 CIT sing 118 n n C6 O5 CIT doub 119 n n C6 O6 CIT sing 120 n n O6 HO6 CIT sing 121 n n # _atom_sites.entry_id 5WBO _atom_sites.fract_transf_matrix[1][1] 0.012051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1Y A 1 301 1 A1Y PFE . D 3 SO4 A 1 302 1 SO4 SO4 . E 4 CIT A 1 303 2 CIT CIT . F 2 A1Y B 1 301 2 A1Y PFE . G 3 SO4 B 1 302 2 SO4 SO4 . H 3 SO4 B 1 303 3 SO4 SO4 . I 4 CIT B 1 304 1 CIT CIT . J 5 GOL B 1 305 1 GOL GOL . K 6 HOH A 1 401 82 HOH HOH . K 6 HOH A 2 402 103 HOH HOH . K 6 HOH A 3 403 31 HOH HOH . K 6 HOH A 4 404 114 HOH HOH . K 6 HOH A 5 405 90 HOH HOH . K 6 HOH A 6 406 83 HOH HOH . K 6 HOH A 7 407 84 HOH HOH . K 6 HOH A 8 408 29 HOH HOH . K 6 HOH A 9 409 81 HOH HOH . K 6 HOH A 10 410 115 HOH HOH . K 6 HOH A 11 411 17 HOH HOH . K 6 HOH A 12 412 59 HOH HOH . K 6 HOH A 13 413 13 HOH HOH . K 6 HOH A 14 414 134 HOH HOH . K 6 HOH A 15 415 113 HOH HOH . K 6 HOH A 16 416 10 HOH HOH . K 6 HOH A 17 417 77 HOH HOH . K 6 HOH A 18 418 97 HOH HOH . K 6 HOH A 19 419 57 HOH HOH . K 6 HOH A 20 420 131 HOH HOH . K 6 HOH A 21 421 25 HOH HOH . K 6 HOH A 22 422 120 HOH HOH . K 6 HOH A 23 423 14 HOH HOH . K 6 HOH A 24 424 96 HOH HOH . K 6 HOH A 25 425 136 HOH HOH . K 6 HOH A 26 426 80 HOH HOH . K 6 HOH A 27 427 91 HOH HOH . K 6 HOH A 28 428 151 HOH HOH . K 6 HOH A 29 429 30 HOH HOH . K 6 HOH A 30 430 74 HOH HOH . K 6 HOH A 31 431 36 HOH HOH . K 6 HOH A 32 432 42 HOH HOH . K 6 HOH A 33 433 138 HOH HOH . K 6 HOH A 34 434 1 HOH HOH . K 6 HOH A 35 435 64 HOH HOH . K 6 HOH A 36 436 32 HOH HOH . K 6 HOH A 37 437 132 HOH HOH . K 6 HOH A 38 438 75 HOH HOH . K 6 HOH A 39 439 72 HOH HOH . K 6 HOH A 40 440 130 HOH HOH . K 6 HOH A 41 441 37 HOH HOH . K 6 HOH A 42 442 127 HOH HOH . K 6 HOH A 43 443 5 HOH HOH . K 6 HOH A 44 444 50 HOH HOH . K 6 HOH A 45 445 43 HOH HOH . K 6 HOH A 46 446 154 HOH HOH . K 6 HOH A 47 447 58 HOH HOH . K 6 HOH A 48 448 152 HOH HOH . K 6 HOH A 49 449 78 HOH HOH . K 6 HOH A 50 450 144 HOH HOH . K 6 HOH A 51 451 129 HOH HOH . K 6 HOH A 52 452 71 HOH HOH . K 6 HOH A 53 453 121 HOH HOH . K 6 HOH A 54 454 133 HOH HOH . K 6 HOH A 55 455 8 HOH HOH . K 6 HOH A 56 456 135 HOH HOH . K 6 HOH A 57 457 145 HOH HOH . K 6 HOH A 58 458 143 HOH HOH . K 6 HOH A 59 459 150 HOH HOH . K 6 HOH A 60 460 147 HOH HOH . K 6 HOH A 61 461 69 HOH HOH . K 6 HOH A 62 462 128 HOH HOH . K 6 HOH A 63 463 155 HOH HOH . K 6 HOH A 64 464 7 HOH HOH . K 6 HOH A 65 465 107 HOH HOH . K 6 HOH A 66 466 79 HOH HOH . K 6 HOH A 67 467 104 HOH HOH . K 6 HOH A 68 468 33 HOH HOH . L 6 HOH B 1 401 86 HOH HOH . L 6 HOH B 2 402 16 HOH HOH . L 6 HOH B 3 403 92 HOH HOH . L 6 HOH B 4 404 66 HOH HOH . L 6 HOH B 5 405 41 HOH HOH . L 6 HOH B 6 406 146 HOH HOH . L 6 HOH B 7 407 11 HOH HOH . L 6 HOH B 8 408 15 HOH HOH . L 6 HOH B 9 409 28 HOH HOH . L 6 HOH B 10 410 20 HOH HOH . L 6 HOH B 11 411 117 HOH HOH . L 6 HOH B 12 412 148 HOH HOH . L 6 HOH B 13 413 99 HOH HOH . L 6 HOH B 14 414 123 HOH HOH . L 6 HOH B 15 415 111 HOH HOH . L 6 HOH B 16 416 87 HOH HOH . L 6 HOH B 17 417 54 HOH HOH . L 6 HOH B 18 418 164 HOH HOH . L 6 HOH B 19 419 52 HOH HOH . L 6 HOH B 20 420 112 HOH HOH . L 6 HOH B 21 421 119 HOH HOH . L 6 HOH B 22 422 109 HOH HOH . L 6 HOH B 23 423 34 HOH HOH . L 6 HOH B 24 424 38 HOH HOH . L 6 HOH B 25 425 142 HOH HOH . L 6 HOH B 26 426 73 HOH HOH . L 6 HOH B 27 427 6 HOH HOH . L 6 HOH B 28 428 67 HOH HOH . L 6 HOH B 29 429 140 HOH HOH . L 6 HOH B 30 430 44 HOH HOH . L 6 HOH B 31 431 12 HOH HOH . L 6 HOH B 32 432 55 HOH HOH . L 6 HOH B 33 433 51 HOH HOH . L 6 HOH B 34 434 95 HOH HOH . L 6 HOH B 35 435 124 HOH HOH . L 6 HOH B 36 436 27 HOH HOH . L 6 HOH B 37 437 76 HOH HOH . L 6 HOH B 38 438 48 HOH HOH . L 6 HOH B 39 439 94 HOH HOH . L 6 HOH B 40 440 68 HOH HOH . L 6 HOH B 41 441 62 HOH HOH . L 6 HOH B 42 442 70 HOH HOH . L 6 HOH B 43 443 159 HOH HOH . L 6 HOH B 44 444 89 HOH HOH . L 6 HOH B 45 445 19 HOH HOH . L 6 HOH B 46 446 149 HOH HOH . L 6 HOH B 47 447 102 HOH HOH . L 6 HOH B 48 448 18 HOH HOH . L 6 HOH B 49 449 118 HOH HOH . L 6 HOH B 50 450 137 HOH HOH . L 6 HOH B 51 451 63 HOH HOH . L 6 HOH B 52 452 65 HOH HOH . L 6 HOH B 53 453 46 HOH HOH . L 6 HOH B 54 454 126 HOH HOH . L 6 HOH B 55 455 61 HOH HOH . L 6 HOH B 56 456 4 HOH HOH . L 6 HOH B 57 457 45 HOH HOH . L 6 HOH B 58 458 110 HOH HOH . L 6 HOH B 59 459 47 HOH HOH . L 6 HOH B 60 460 35 HOH HOH . L 6 HOH B 61 461 141 HOH HOH . L 6 HOH B 62 462 85 HOH HOH . L 6 HOH B 63 463 56 HOH HOH . L 6 HOH B 64 464 22 HOH HOH . L 6 HOH B 65 465 105 HOH HOH . L 6 HOH B 66 466 21 HOH HOH . L 6 HOH B 67 467 24 HOH HOH . L 6 HOH B 68 468 53 HOH HOH . L 6 HOH B 69 469 108 HOH HOH . L 6 HOH B 70 470 60 HOH HOH . L 6 HOH B 71 471 23 HOH HOH . L 6 HOH B 72 472 101 HOH HOH . L 6 HOH B 73 473 106 HOH HOH . L 6 HOH B 74 474 39 HOH HOH . L 6 HOH B 75 475 139 HOH HOH . L 6 HOH B 76 476 49 HOH HOH . L 6 HOH B 77 477 26 HOH HOH . L 6 HOH B 78 478 122 HOH HOH . L 6 HOH B 79 479 161 HOH HOH . L 6 HOH B 80 480 153 HOH HOH . L 6 HOH B 81 481 40 HOH HOH . L 6 HOH B 82 482 163 HOH HOH . L 6 HOH B 83 483 125 HOH HOH . L 6 HOH B 84 484 3 HOH HOH . L 6 HOH B 85 485 162 HOH HOH . L 6 HOH B 86 486 156 HOH HOH . L 6 HOH B 87 487 160 HOH HOH . L 6 HOH B 88 488 88 HOH HOH . L 6 HOH B 89 489 157 HOH HOH . L 6 HOH B 90 490 98 HOH HOH . L 6 HOH B 91 491 158 HOH HOH . L 6 HOH B 92 492 116 HOH HOH . L 6 HOH B 93 493 93 HOH HOH . L 6 HOH B 94 494 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . I 4 -18.235 34.814 67.801 1 80.65 ? C1 CIT 304 B 1 HETATM 2 O O1 CIT . . . I 4 -18.36 33.534 67.955 1 77.71 ? O1 CIT 304 B 1 HETATM 3 O O2 CIT . . . I 4 -18.898 35.617 68.418 1 82.3 ? O2 CIT 304 B 1 HETATM 4 C C2 CIT . . . I 4 -17.235 35.185 66.726 1 82.41 ? C2 CIT 304 B 1 HETATM 5 C C3 CIT . . . I 4 -16.153 36.23 67.041 1 83.41 ? C3 CIT 304 B 1 HETATM 6 O O7 CIT . . . I 4 -15.485 35.857 68.246 1 83.8 ? O7 CIT 304 B 1 HETATM 7 C C4 CIT . . . I 4 -15.145 36.209 65.883 1 82.15 ? C4 CIT 304 B 1 HETATM 8 C C5 CIT . . . I 4 -13.983 37.166 66.014 1 81.25 ? C5 CIT 304 B 1 HETATM 9 O O3 CIT . . . I 4 -13.747 37.819 64.901 1 84.6 ? O3 CIT 304 B 1 HETATM 10 O O4 CIT . . . I 4 -13.333 37.318 67.045 1 76.74 ? O4 CIT 304 B 1 HETATM 11 C C6 CIT . . . I 4 -16.73 37.641 67.204 1 84.9 ? C6 CIT 304 B 1 HETATM 12 O O5 CIT . . . I 4 -17.788 37.876 66.466 1 85.79 ? O5 CIT 304 B 1 HETATM 13 O O6 CIT . . . I 4 -16.215 38.481 67.921 1 85.04 ? O6 CIT 304 B 1 HETATM 14 H H21 CIT . . . I 4 -16.762 34.282 66.341 1 82.47 ? H21 CIT 304 B 1 HETATM 15 H H22 CIT . . . I 4 -17.828 35.543 65.888 1 82.55 ? H22 CIT 304 B 1 HETATM 16 H HO7 CIT . . . I 4 -15.113 34.945 68.119 1 83.74 ? HO7 CIT 304 B 1 HETATM 17 H H41 CIT . . . I 4 -15.664 36.363 64.937 1 81.7 ? H41 CIT 304 B 1 HETATM 18 H H42 CIT . . . I 4 -14.716 35.212 65.789 1 82.11 ? H42 CIT 304 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #