data_5WBP # _model_server_result.job_id nz9WIw85ji0R350m-reVKw _model_server_result.datetime_utc '2024-12-21 16:51:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":305}' # _entry.id 5WBP # _exptl.entry_id 5WBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WBP _cell.length_a 82.91 _cell.length_b 85.02 _cell.length_c 138.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 150 n n C1 C2 GOL sing 151 n n C1 H11 GOL sing 152 n n C1 H12 GOL sing 153 n n O1 HO1 GOL sing 154 n n C2 O2 GOL sing 155 n n C2 C3 GOL sing 156 n n C2 H2 GOL sing 157 n n O2 HO2 GOL sing 158 n n C3 O3 GOL sing 159 n n C3 H31 GOL sing 160 n n C3 H32 GOL sing 161 n n O3 HO3 GOL sing 162 n n # _atom_sites.entry_id 5WBP _atom_sites.fract_transf_matrix[1][1] 0.012061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A2J A 1 301 1 A2J PFE . D 3 SO4 A 1 302 1 SO4 SO4 . E 3 SO4 B 1 301 2 SO4 SO4 . F 3 SO4 B 1 302 3 SO4 SO4 . G 3 SO4 B 1 303 4 SO4 SO4 . H 3 SO4 B 1 304 5 SO4 SO4 . I 4 GOL B 1 305 1 GOL GOL . J 5 HOH A 1 401 6 HOH HOH . J 5 HOH A 2 402 9 HOH HOH . J 5 HOH A 3 403 8 HOH HOH . J 5 HOH A 4 404 22 HOH HOH . J 5 HOH A 5 405 23 HOH HOH . J 5 HOH A 6 406 2 HOH HOH . J 5 HOH A 7 407 7 HOH HOH . J 5 HOH A 8 408 3 HOH HOH . J 5 HOH A 9 409 21 HOH HOH . K 5 HOH B 1 401 19 HOH HOH . K 5 HOH B 2 402 11 HOH HOH . K 5 HOH B 3 403 5 HOH HOH . K 5 HOH B 4 404 1 HOH HOH . K 5 HOH B 5 405 24 HOH HOH . K 5 HOH B 6 406 18 HOH HOH . K 5 HOH B 7 407 13 HOH HOH . K 5 HOH B 8 408 10 HOH HOH . K 5 HOH B 9 409 25 HOH HOH . K 5 HOH B 10 410 20 HOH HOH . K 5 HOH B 11 411 16 HOH HOH . K 5 HOH B 12 412 15 HOH HOH . K 5 HOH B 13 413 4 HOH HOH . K 5 HOH B 14 414 17 HOH HOH . K 5 HOH B 15 415 14 HOH HOH . K 5 HOH B 16 416 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -16.588 34.376 67.52 1 88.06 ? C1 GOL 305 B 1 HETATM 2 O O1 GOL . . . I 4 -17.978 34.466 67.844 1 85.22 ? O1 GOL 305 B 1 HETATM 3 C C2 GOL . . . I 4 -16.016 35.67 66.977 1 92.25 ? C2 GOL 305 B 1 HETATM 4 O O2 GOL . . . I 4 -16.942 36.753 67.165 1 93.96 ? O2 GOL 305 B 1 HETATM 5 C C3 GOL . . . I 4 -14.694 36.023 67.625 1 95.59 ? C3 GOL 305 B 1 HETATM 6 O O3 GOL . . . I 4 -13.925 36.907 66.808 1 97.28 ? O3 GOL 305 B 1 HETATM 7 H H11 GOL . . . I 4 -16.035 34.033 68.392 1 88.05 ? H11 GOL 305 B 1 HETATM 8 H H12 GOL . . . I 4 -16.452 33.591 66.777 1 87.71 ? H12 GOL 305 B 1 HETATM 9 H HO1 GOL . . . I 4 -18.166 33.714 68.464 1 84.47 ? HO1 GOL 305 B 1 HETATM 10 H H2 GOL . . . I 4 -15.931 35.64 65.892 1 91.78 ? H2 GOL 305 B 1 HETATM 11 H HO2 GOL . . . I 4 -17.143 36.839 68.133 1 93.91 ? HO2 GOL 305 B 1 HETATM 12 H H31 GOL . . . I 4 -14.854 36.473 68.604 1 95.59 ? H31 GOL 305 B 1 HETATM 13 H H32 GOL . . . I 4 -14.11 35.124 67.815 1 95.67 ? H32 GOL 305 B 1 HETATM 14 H HO3 GOL . . . I 4 -13.196 37.251 67.389 1 97.02 ? HO3 GOL 305 B 1 # _model_server_stats.io_time_ms 180 _model_server_stats.parse_time_ms 435 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 1395 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #