data_5WBQ # _model_server_result.job_id U_1b78oouCIYJBdmZbhHvw _model_server_result.datetime_utc '2024-12-21 16:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5WBQ # _exptl.entry_id 5WBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.328 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-ethyl-7-[(3S)-3-hydroxy-3-methylpyrrolidin-1-yl]-5-(trifluoromethyl)-1H-pyrrolo[3,2-b]pyridine-6-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WBQ _cell.length_a 83.2 _cell.length_b 85.41 _cell.length_c 138.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C16 H17 F3 N4 O' _chem_comp.formula_weight 338.328 _chem_comp.id A3J _chem_comp.mon_nstd_flag . _chem_comp.name 2-ethyl-7-[(3S)-3-hydroxy-3-methylpyrrolidin-1-yl]-5-(trifluoromethyl)-1H-pyrrolo[3,2-b]pyridine-6-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C14 A3J sing 1 n n C16 C14 A3J sing 2 n n C14 C15 A3J sing 3 n n C14 C13 A3J sing 4 n n C15 N4 A3J sing 5 n n C13 C12 A3J sing 6 n n N3 C11 A3J trip 7 n n N4 C12 A3J sing 8 n n N4 C7 A3J sing 9 n n C11 C8 A3J sing 10 n n F3 C10 A3J sing 11 n n C7 C8 A3J doub 12 n y C7 C6 A3J sing 13 n y C8 C9 A3J sing 14 n y C6 N1 A3J sing 15 n y C6 C5 A3J doub 16 n y C10 C9 A3J sing 17 n n C10 F1 A3J sing 18 n n C10 F2 A3J sing 19 n n C9 N2 A3J doub 20 n y N1 C3 A3J sing 21 n y C5 N2 A3J sing 22 n y C5 C4 A3J sing 23 n y C3 C4 A3J doub 24 n y C3 C2 A3J sing 25 n n C1 C2 A3J sing 26 n n C4 H7 A3J sing 27 n n C13 H10 A3J sing 28 n n C13 H11 A3J sing 29 n n C16 H15 A3J sing 30 n n C16 H14 A3J sing 31 n n C16 H16 A3J sing 32 n n C1 H2 A3J sing 33 n n C1 H4 A3J sing 34 n n C1 H3 A3J sing 35 n n C2 H5 A3J sing 36 n n C2 H6 A3J sing 37 n n N1 H1 A3J sing 38 n n C12 H8 A3J sing 39 n n C12 H9 A3J sing 40 n n C15 H12 A3J sing 41 n n C15 H13 A3J sing 42 n n O1 H17 A3J sing 43 n n # _atom_sites.entry_id 5WBQ _atom_sites.fract_transf_matrix[1][1] 0.012019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A3J A 1 301 1 A3J PFE . D 3 SO4 A 1 302 1 SO4 SO4 . E 2 A3J B 1 301 2 A3J PFE . F 3 SO4 B 1 302 2 SO4 SO4 . G 4 CL B 1 303 1 CL CL . H 5 HOH A 1 401 33 HOH HOH . H 5 HOH A 2 402 31 HOH HOH . H 5 HOH A 3 403 21 HOH HOH . H 5 HOH A 4 404 22 HOH HOH . H 5 HOH A 5 405 11 HOH HOH . H 5 HOH A 6 406 6 HOH HOH . H 5 HOH A 7 407 3 HOH HOH . H 5 HOH A 8 408 1 HOH HOH . H 5 HOH A 9 409 23 HOH HOH . H 5 HOH A 10 410 30 HOH HOH . H 5 HOH A 11 411 20 HOH HOH . H 5 HOH A 12 412 18 HOH HOH . H 5 HOH A 13 413 34 HOH HOH . H 5 HOH A 14 414 17 HOH HOH . H 5 HOH A 15 415 19 HOH HOH . H 5 HOH A 16 416 16 HOH HOH . H 5 HOH A 17 417 13 HOH HOH . I 5 HOH B 1 401 24 HOH HOH . I 5 HOH B 2 402 7 HOH HOH . I 5 HOH B 3 403 9 HOH HOH . I 5 HOH B 4 404 27 HOH HOH . I 5 HOH B 5 405 25 HOH HOH . I 5 HOH B 6 406 14 HOH HOH . I 5 HOH B 7 407 5 HOH HOH . I 5 HOH B 8 408 10 HOH HOH . I 5 HOH B 9 409 12 HOH HOH . I 5 HOH B 10 410 28 HOH HOH . I 5 HOH B 11 411 26 HOH HOH . I 5 HOH B 12 412 8 HOH HOH . I 5 HOH B 13 413 4 HOH HOH . I 5 HOH B 14 414 32 HOH HOH . I 5 HOH B 15 415 35 HOH HOH . I 5 HOH B 16 416 2 HOH HOH . I 5 HOH B 17 417 29 HOH HOH . I 5 HOH B 18 418 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 A3J . . . C 2 -1.867 -2.313 19.068 1 131.53 ? N3 A3J 301 A 1 HETATM 2 C C4 A3J . . . C 2 -7.727 -2.046 22.387 1 132.38 ? C4 A3J 301 A 1 HETATM 3 N N2 A3J . . . C 2 -5.72 -3.423 21.722 1 132.27 ? N2 A3J 301 A 1 HETATM 4 C C7 A3J . . . C 2 -5.105 -1.187 19.971 1 133.44 ? C7 A3J 301 A 1 HETATM 5 C C6 A3J . . . C 2 -6.268 -1.215 20.804 1 133.22 ? C6 A3J 301 A 1 HETATM 6 C C9 A3J . . . C 2 -4.629 -3.408 20.955 1 132.13 ? C9 A3J 301 A 1 HETATM 7 C C13 A3J . . . C 2 -5.029 2.165 18.523 1 135.91 ? C13 A3J 301 A 1 HETATM 8 C C8 A3J . . . C 2 -4.232 -2.308 20.091 1 132.82 ? C8 A3J 301 A 1 HETATM 9 C C16 A3J . . . C 2 -3.144 1.866 16.816 1 134.33 ? C16 A3J 301 A 1 HETATM 10 C C1 A3J . . . C 2 -10.594 -0.634 21.979 1 131.73 ? C1 A3J 301 A 1 HETATM 11 C C2 A3J . . . C 2 -9.311 0 22.454 1 132.06 ? C2 A3J 301 A 1 HETATM 12 C C3 A3J . . . C 2 -8.149 -0.793 21.977 1 132.46 ? C3 A3J 301 A 1 HETATM 13 C C5 A3J . . . C 2 -6.528 -2.343 21.664 1 132.55 ? C5 A3J 301 A 1 HETATM 14 N N1 A3J . . . C 2 -7.278 -0.288 21.012 1 133.2 ? N1 A3J 301 A 1 HETATM 15 C C10 A3J . . . C 2 -3.832 -4.749 20.949 1 130.73 ? C10 A3J 301 A 1 HETATM 16 F F1 A3J . . . C 2 -2.532 -4.57 21.137 1 129.89 ? F1 A3J 301 A 1 HETATM 17 F F2 A3J . . . C 2 -4.231 -5.568 21.911 1 131.71 ? F2 A3J 301 A 1 HETATM 18 F F3 A3J . . . C 2 -3.955 -5.389 19.798 1 129.72 ? F3 A3J 301 A 1 HETATM 19 C C11 A3J . . . C 2 -2.922 -2.305 19.5 1 131.99 ? C11 A3J 301 A 1 HETATM 20 N N4 A3J . . . C 2 -5.056 -0.07 19.118 1 134.85 ? N4 A3J 301 A 1 HETATM 21 C C12 A3J . . . C 2 -4.751 1.235 19.693 1 135.66 ? C12 A3J 301 A 1 HETATM 22 C C14 A3J . . . C 2 -4.493 1.362 17.305 1 135.59 ? C14 A3J 301 A 1 HETATM 23 C C15 A3J . . . C 2 -4.383 -0.106 17.777 1 135.72 ? C15 A3J 301 A 1 HETATM 24 O O1 A3J . . . C 2 -5.447 1.35 16.234 1 136.8 ? O1 A3J 301 A 1 HETATM 25 H H7 A3J . . . C 2 -8.205 -2.701 23.114 1 132.56 ? H7 A3J 301 A 1 HETATM 26 H H10 A3J . . . C 2 -6.083 2.429 18.448 1 136.09 ? H10 A3J 301 A 1 HETATM 27 H H11 A3J . . . C 2 -4.515 3.116 18.639 1 136.06 ? H11 A3J 301 A 1 HETATM 28 H H15 A3J . . . C 2 -2.697 1.175 16.104 1 134.37 ? H15 A3J 301 A 1 HETATM 29 H H14 A3J . . . C 2 -2.43 1.985 17.63 1 134.2 ? H14 A3J 301 A 1 HETATM 30 H H16 A3J . . . C 2 -3.227 2.831 16.318 1 134.52 ? H16 A3J 301 A 1 HETATM 31 H H2 A3J . . . C 2 -11.467 -0.103 22.355 1 131.74 ? H2 A3J 301 A 1 HETATM 32 H H4 A3J . . . C 2 -10.686 -1.667 22.31 1 131.84 ? H4 A3J 301 A 1 HETATM 33 H H3 A3J . . . C 2 -10.676 -0.646 20.893 1 131.71 ? H3 A3J 301 A 1 HETATM 34 H H5 A3J . . . C 2 -9.246 1.037 22.127 1 132.13 ? H5 A3J 301 A 1 HETATM 35 H H6 A3J . . . C 2 -9.282 0.051 23.542 1 132.12 ? H6 A3J 301 A 1 HETATM 36 H H1 A3J . . . C 2 -7.372 0.598 20.525 1 133.3 ? H1 A3J 301 A 1 HETATM 37 H H8 A3J . . . C 2 -5.281 1.531 20.597 1 135.7 ? H8 A3J 301 A 1 HETATM 38 H H9 A3J . . . C 2 -3.696 1.209 19.954 1 135.88 ? H9 A3J 301 A 1 HETATM 39 H H12 A3J . . . C 2 -3.339 -0.371 17.931 1 135.89 ? H12 A3J 301 A 1 HETATM 40 H H13 A3J . . . C 2 -4.77 -0.827 17.06 1 135.83 ? H13 A3J 301 A 1 HETATM 41 H H17 A3J . . . C 2 -6.335 1.105 16.604 1 137.09 ? H17 A3J 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 41 #