data_5WBR
#
_model_server_result.job_id            YVV2imSap2K9GxJy5e_l2Q 
_model_server_result.datetime_utc      '2024-12-30 17:38:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wbr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    5WBR 
#
_exptl.entry_id    5WBR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WBR 
_cell.length_a            83.19 
_cell.length_b            86.16 
_cell.length_c            137.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WBR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 127 n n 
C1 O2 CIT sing 128 n n 
C1 C2 CIT sing 129 n n 
O2 HO2 CIT sing 130 n n 
C2 C3 CIT sing 131 n n 
C2 H21 CIT sing 132 n n 
C2 H22 CIT sing 133 n n 
C3 O7 CIT sing 134 n n 
C3 C4 CIT sing 135 n n 
C3 C6 CIT sing 136 n n 
O7 HO7 CIT sing 137 n n 
C4 C5 CIT sing 138 n n 
C4 H41 CIT sing 139 n n 
C4 H42 CIT sing 140 n n 
C5 O3 CIT doub 141 n n 
C5 O4 CIT sing 142 n n 
O4 HO4 CIT sing 143 n n 
C6 O5 CIT doub 144 n n 
C6 O6 CIT sing 145 n n 
O6 HO6 CIT sing 146 n n 
#
_atom_sites.entry_id                     5WBR 
_atom_sites.fract_transf_matrix[1][1]    0.012021 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011606 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007248 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A3Y A 1 301 2 A3Y PFE . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 4 CIT A 1 303 1 CIT CIT . 
F 2 A3Y B 1 301 1 A3Y PFE . 
G 3 SO4 B 1 302 2 SO4 SO4 . 
H 3 SO4 B 1 303 3 SO4 SO4 . 
I 3 SO4 B 1 304 4 SO4 SO4 . 
J 3 SO4 B 1 305 5 SO4 SO4 . 
K 5 GOL B 1 306 1 GOL GOL . 
L 6 HOH A 1 401 10 HOH HOH . 
L 6 HOH A 2 402 24 HOH HOH . 
L 6 HOH A 3 403 2 HOH HOH . 
L 6 HOH A 4 404 4 HOH HOH . 
L 6 HOH A 5 405 16 HOH HOH . 
L 6 HOH A 6 406 12 HOH HOH . 
L 6 HOH A 7 407 25 HOH HOH . 
L 6 HOH A 8 408 6 HOH HOH . 
L 6 HOH A 9 409 18 HOH HOH . 
L 6 HOH A 10 410 11 HOH HOH . 
L 6 HOH A 11 411 5 HOH HOH . 
L 6 HOH A 12 412 23 HOH HOH . 
L 6 HOH A 13 413 21 HOH HOH . 
M 6 HOH B 1 401 1 HOH HOH . 
M 6 HOH B 2 402 33 HOH HOH . 
M 6 HOH B 3 403 14 HOH HOH . 
M 6 HOH B 4 404 13 HOH HOH . 
M 6 HOH B 5 405 27 HOH HOH . 
M 6 HOH B 6 406 36 HOH HOH . 
M 6 HOH B 7 407 35 HOH HOH . 
M 6 HOH B 8 408 34 HOH HOH . 
M 6 HOH B 9 409 20 HOH HOH . 
M 6 HOH B 10 410 7 HOH HOH . 
M 6 HOH B 11 411 30 HOH HOH . 
M 6 HOH B 12 412 17 HOH HOH . 
M 6 HOH B 13 413 32 HOH HOH . 
M 6 HOH B 14 414 19 HOH HOH . 
M 6 HOH B 15 415 28 HOH HOH . 
M 6 HOH B 16 416 31 HOH HOH . 
M 6 HOH B 17 417 26 HOH HOH . 
M 6 HOH B 18 418 22 HOH HOH . 
M 6 HOH B 19 419 15 HOH HOH . 
M 6 HOH B 20 420 8 HOH HOH . 
M 6 HOH B 21 421 9 HOH HOH . 
M 6 HOH B 22 422 37 HOH HOH . 
M 6 HOH B 23 423 3 HOH HOH . 
M 6 HOH B 24 424 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . E 4 -7.382 14.13 22.764 1 93.6 ? C1 CIT 303 A 1 
HETATM 2 O O1 CIT . . . E 4 -7.22 13.698 21.63 1 91.36 ? O1 CIT 303 A 1 
HETATM 3 O O2 CIT . . . E 4 -8.564 14.416 23.275 1 96.67 ? O2 CIT 303 A 1 
HETATM 4 C C2 CIT . . . E 4 -6.27 14.351 23.766 1 92.66 ? C2 CIT 303 A 1 
HETATM 5 C C3 CIT . . . E 4 -4.815 14.434 23.272 1 92.83 ? C3 CIT 303 A 1 
HETATM 6 O O7 CIT . . . E 4 -4.594 13.404 22.302 1 94.11 ? O7 CIT 303 A 1 
HETATM 7 C C4 CIT . . . E 4 -4.529 15.81 22.636 1 88.94 ? C4 CIT 303 A 1 
HETATM 8 C C5 CIT . . . E 4 -4.465 15.947 21.105 1 83.09 ? C5 CIT 303 A 1 
HETATM 9 O O3 CIT . . . E 4 -5.439 15.916 20.371 1 80.4 ? O3 CIT 303 A 1 
HETATM 10 O O4 CIT . . . E 4 -3.264 16.153 20.655 1 80.78 ? O4 CIT 303 A 1 
HETATM 11 C C6 CIT . . . E 4 -3.891 14.178 24.465 1 93.62 ? C6 CIT 303 A 1 
HETATM 12 O O5 CIT . . . E 4 -2.924 13.418 24.398 1 96.09 ? O5 CIT 303 A 1 
HETATM 13 O O6 CIT . . . E 4 -4.27 14.801 25.566 1 89.85 ? O6 CIT 303 A 1 
HETATM 14 H H21 CIT . . . E 4 -6.511 15.205 24.398 1 92.05 ? H21 CIT 303 A 1 
HETATM 15 H H22 CIT . . . E 4 -6.342 13.508 24.45 1 92.67 ? H22 CIT 303 A 1 
HETATM 16 H HO7 CIT . . . E 4 -3.619 13.35 22.117 1 94.03 ? HO7 CIT 303 A 1 
HETATM 17 H H41 CIT . . . E 4 -3.632 16.241 23.077 1 88.75 ? H41 CIT 303 A 1 
HETATM 18 H H42 CIT . . . E 4 -5.3 16.515 22.945 1 89.36 ? H42 CIT 303 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           18 
#