data_5WBR
#
_model_server_result.job_id            WuuOa3zPYfzDvdDWA3RTQw 
_model_server_result.datetime_utc      '2024-12-21 17:21:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wbr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":306}' 
#
_entry.id    5WBR 
#
_exptl.entry_id    5WBR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WBR 
_cell.length_a            83.19 
_cell.length_b            86.16 
_cell.length_c            137.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WBR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 206 n n 
C1 C2 GOL sing 207 n n 
C1 H11 GOL sing 208 n n 
C1 H12 GOL sing 209 n n 
O1 HO1 GOL sing 210 n n 
C2 O2 GOL sing 211 n n 
C2 C3 GOL sing 212 n n 
C2 H2 GOL sing 213 n n 
O2 HO2 GOL sing 214 n n 
C3 O3 GOL sing 215 n n 
C3 H31 GOL sing 216 n n 
C3 H32 GOL sing 217 n n 
O3 HO3 GOL sing 218 n n 
#
_atom_sites.entry_id                     5WBR 
_atom_sites.fract_transf_matrix[1][1]    0.012021 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011606 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007248 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A3Y A 1 301 2 A3Y PFE . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 4 CIT A 1 303 1 CIT CIT . 
F 2 A3Y B 1 301 1 A3Y PFE . 
G 3 SO4 B 1 302 2 SO4 SO4 . 
H 3 SO4 B 1 303 3 SO4 SO4 . 
I 3 SO4 B 1 304 4 SO4 SO4 . 
J 3 SO4 B 1 305 5 SO4 SO4 . 
K 5 GOL B 1 306 1 GOL GOL . 
L 6 HOH A 1 401 10 HOH HOH . 
L 6 HOH A 2 402 24 HOH HOH . 
L 6 HOH A 3 403 2 HOH HOH . 
L 6 HOH A 4 404 4 HOH HOH . 
L 6 HOH A 5 405 16 HOH HOH . 
L 6 HOH A 6 406 12 HOH HOH . 
L 6 HOH A 7 407 25 HOH HOH . 
L 6 HOH A 8 408 6 HOH HOH . 
L 6 HOH A 9 409 18 HOH HOH . 
L 6 HOH A 10 410 11 HOH HOH . 
L 6 HOH A 11 411 5 HOH HOH . 
L 6 HOH A 12 412 23 HOH HOH . 
L 6 HOH A 13 413 21 HOH HOH . 
M 6 HOH B 1 401 1 HOH HOH . 
M 6 HOH B 2 402 33 HOH HOH . 
M 6 HOH B 3 403 14 HOH HOH . 
M 6 HOH B 4 404 13 HOH HOH . 
M 6 HOH B 5 405 27 HOH HOH . 
M 6 HOH B 6 406 36 HOH HOH . 
M 6 HOH B 7 407 35 HOH HOH . 
M 6 HOH B 8 408 34 HOH HOH . 
M 6 HOH B 9 409 20 HOH HOH . 
M 6 HOH B 10 410 7 HOH HOH . 
M 6 HOH B 11 411 30 HOH HOH . 
M 6 HOH B 12 412 17 HOH HOH . 
M 6 HOH B 13 413 32 HOH HOH . 
M 6 HOH B 14 414 19 HOH HOH . 
M 6 HOH B 15 415 28 HOH HOH . 
M 6 HOH B 16 416 31 HOH HOH . 
M 6 HOH B 17 417 26 HOH HOH . 
M 6 HOH B 18 418 22 HOH HOH . 
M 6 HOH B 19 419 15 HOH HOH . 
M 6 HOH B 20 420 8 HOH HOH . 
M 6 HOH B 21 421 9 HOH HOH . 
M 6 HOH B 22 422 37 HOH HOH . 
M 6 HOH B 23 423 3 HOH HOH . 
M 6 HOH B 24 424 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 5 4.125 14.36 41.131 1 103.02 ? C1 GOL 306 B 1 
HETATM 2 O O1 GOL . . . K 5 3.284 15.507 41.11 1 103.79 ? O1 GOL 306 B 1 
HETATM 3 C C2 GOL . . . K 5 4.824 14.176 39.803 1 101.74 ? C2 GOL 306 B 1 
HETATM 4 O O2 GOL . . . K 5 3.919 14.483 38.729 1 102.03 ? O2 GOL 306 B 1 
HETATM 5 C C3 GOL . . . K 5 6.063 15.041 39.726 1 99.57 ? C3 GOL 306 B 1 
HETATM 6 O O3 GOL . . . K 5 6.41 15.322 38.379 1 98.16 ? O3 GOL 306 B 1 
HETATM 7 H H11 GOL . . . K 5 4.85 14.445 41.939 1 103 ? H11 GOL 306 B 1 
HETATM 8 H H12 GOL . . . K 5 3.53 13.478 41.363 1 103.12 ? H12 GOL 306 B 1 
HETATM 9 H HO1 GOL . . . K 5 2.635 15.345 40.376 1 103.75 ? HO1 GOL 306 B 1 
HETATM 10 H H2 GOL . . . K 5 5.049 13.127 39.613 1 101.93 ? H2 GOL 306 B 1 
HETATM 11 H HO2 GOL . . . K 5 3.995 15.445 38.492 1 102.1 ? HO2 GOL 306 B 1 
HETATM 12 H H31 GOL . . . K 5 5.932 15.969 40.276 1 99.34 ? H31 GOL 306 B 1 
HETATM 13 H H32 GOL . . . K 5 6.894 14.533 40.212 1 99.49 ? H32 GOL 306 B 1 
HETATM 14 H HO3 GOL . . . K 5 6.199 16.283 38.243 1 97.95 ? HO3 GOL 306 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           50 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#