data_5WBV
#
_model_server_result.job_id            vwtDwbDZJ9_jiJqJ8_MRLw 
_model_server_result.datetime_utc      '2025-07-03 20:44:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    5WBV 
#
_exptl.entry_id    5WBV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              380.781 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-chloro-5-(4-methyl-6-oxo-3-phenylpyrano[2,3-c]pyrazol-1(6H)-yl)benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         101.26 
_cell.angle_beta          107.51 
_cell.angle_gamma         89.67 
_cell.entry_id            5WBV 
_cell.length_a            46.324 
_cell.length_b            50.559 
_cell.length_c            74.818 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,U 1 1 
B,L,M,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 213 A CYS 275 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A SG CYS 257 A CYS 319 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc3 A SG CYS 259 A CYS 321 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc4 A SG CYS 262 A CYS 324 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc5 B SG CYS 213 B CYS 275 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc6 B SG CYS 257 B CYS 319 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc7 B SG CYS 259 B CYS 321 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc8 B SG CYS 262 B CYS 324 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
#
_chem_comp.formula           'C20 H13 Cl N2 O4' 
_chem_comp.formula_weight    380.781 
_chem_comp.id                9ZY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-chloro-5-(4-methyl-6-oxo-3-phenylpyrano[2,3-c]pyrazol-1(6H)-yl)benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C13 9ZY doub 1 n n 
O2 C13 9ZY sing 2 n n 
C13 C9 9ZY sing 3 n n 
C16 C15 9ZY doub 4 n y 
C16 C17 9ZY sing 5 n y 
C9 C8 9ZY doub 6 n y 
C9 C10 9ZY sing 7 n y 
C15 C14 9ZY sing 8 n y 
C17 C18 9ZY doub 9 n y 
CL C10 9ZY sing 10 n n 
C8 C7 9ZY sing 11 n y 
C10 C11 9ZY doub 12 n y 
N C6 9ZY doub 13 n y 
N N1 9ZY sing 14 n y 
C14 C6 9ZY sing 15 n n 
C14 C19 9ZY doub 16 n y 
C18 C19 9ZY sing 17 n y 
C7 N1 9ZY sing 18 n n 
C7 C12 9ZY doub 19 n y 
C6 C5 9ZY sing 20 n y 
C11 C12 9ZY sing 21 n y 
N1 C4 9ZY sing 22 n y 
C5 C4 9ZY doub 23 n y 
C5 C1 9ZY sing 24 n n 
C4 O1 9ZY sing 25 n n 
O1 C3 9ZY sing 26 n n 
C1 C 9ZY sing 27 n n 
C1 C2 9ZY doub 28 n n 
C3 C2 9ZY sing 29 n n 
C3 O 9ZY doub 30 n n 
C8 H1 9ZY sing 31 n n 
C11 H2 9ZY sing 32 n n 
C12 H3 9ZY sing 33 n n 
C15 H4 9ZY sing 34 n n 
O2 H5 9ZY sing 35 n n 
C2 H6 9ZY sing 36 n n 
C H7 9ZY sing 37 n n 
C H8 9ZY sing 38 n n 
C H9 9ZY sing 39 n n 
C19 H10 9ZY sing 40 n n 
C18 H11 9ZY sing 41 n n 
C17 H12 9ZY sing 42 n n 
C16 H13 9ZY sing 43 n n 
#
_atom_sites.entry_id                     5WBV 
_atom_sites.fract_transf_matrix[1][1]    0.021587 
_atom_sites.fract_transf_matrix[1][2]    -0.000124 
_atom_sites.fract_transf_matrix[1][3]    0.006929 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019779 
_atom_sites.fract_transf_matrix[2][3]    0.004099 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 400 ZN ZN . 
D 3 SAM A 1 402 500 SAM SAM . 
E 4 9ZY A 1 403 600 9ZY XXX . 
F 5 UNX A 1 404 33 UNX UNX . 
G 5 UNX A 1 405 34 UNX UNX . 
H 5 UNX A 1 406 36 UNX UNX . 
I 5 UNX A 1 407 37 UNX UNX . 
J 5 UNX A 1 408 41 UNX UNX . 
K 5 UNX A 1 409 42 UNX UNX . 
L 2 ZN B 1 401 400 ZN ZN . 
M 3 SAM B 1 402 500 SAM SAM . 
N 4 9ZY B 1 403 600 9ZY XXX . 
O 5 UNX B 1 404 32 UNX UNX . 
P 5 UNX B 1 405 38 UNX UNX . 
Q 5 UNX B 1 406 39 UNX UNX . 
R 5 UNX B 1 407 40 UNX UNX . 
S 5 UNX B 1 408 43 UNX UNX . 
T 5 UNX B 1 409 44 UNX UNX . 
U 6 HOH A 1 501 20 HOH HOH . 
U 6 HOH A 2 502 1 HOH HOH . 
U 6 HOH A 3 503 24 HOH HOH . 
U 6 HOH A 4 504 13 HOH HOH . 
U 6 HOH A 5 505 25 HOH HOH . 
U 6 HOH A 6 506 2 HOH HOH . 
U 6 HOH A 7 507 26 HOH HOH . 
U 6 HOH A 8 508 9 HOH HOH . 
U 6 HOH A 9 509 21 HOH HOH . 
U 6 HOH A 10 510 17 HOH HOH . 
U 6 HOH A 11 511 27 HOH HOH . 
U 6 HOH A 12 512 6 HOH HOH . 
U 6 HOH A 13 513 28 HOH HOH . 
U 6 HOH A 14 514 22 HOH HOH . 
U 6 HOH A 15 515 11 HOH HOH . 
U 6 HOH A 16 516 14 HOH HOH . 
U 6 HOH A 17 517 4 HOH HOH . 
U 6 HOH A 18 518 31 HOH HOH . 
U 6 HOH A 19 519 10 HOH HOH . 
U 6 HOH A 20 520 29 HOH HOH . 
V 6 HOH B 1 501 3 HOH HOH . 
V 6 HOH B 2 502 5 HOH HOH . 
V 6 HOH B 3 503 16 HOH HOH . 
V 6 HOH B 4 504 7 HOH HOH . 
V 6 HOH B 5 505 30 HOH HOH . 
V 6 HOH B 6 506 8 HOH HOH . 
V 6 HOH B 7 507 15 HOH HOH . 
V 6 HOH B 8 508 12 HOH HOH . 
V 6 HOH B 9 509 19 HOH HOH . 
V 6 HOH B 10 510 23 HOH HOH . 
V 6 HOH B 11 511 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 9ZY . . . E 4 6.696 34.614 -4.152 1 50.07 ? O3 9ZY 403 A 1 
HETATM 2 C C4 9ZY . . . E 4 6.475 38.298 1.635 1 33.72 ? C4 9ZY 403 A 1 
HETATM 3 C C5 9ZY . . . E 4 6.765 39.636 1.602 1 30.82 ? C5 9ZY 403 A 1 
HETATM 4 C C6 9ZY . . . E 4 7.186 39.856 0.257 1 32.95 ? C6 9ZY 403 A 1 
HETATM 5 N N1 9ZY . . . E 4 6.676 37.761 0.402 1 36.36 ? N1 9ZY 403 A 1 
HETATM 6 C C7 9ZY . . . E 4 6.508 36.424 -0.081 1 38.32 ? C7 9ZY 403 A 1 
HETATM 7 C C8 9ZY . . . E 4 7.044 36.059 -1.32 1 40.02 ? C8 9ZY 403 A 1 
HETATM 8 C C9 9ZY . . . E 4 6.931 34.744 -1.789 1 44.62 ? C9 9ZY 403 A 1 
HETATM 9 C C10 9ZY . . . E 4 6.291 33.809 -0.978 1 47.04 ? C10 9ZY 403 A 1 
HETATM 10 C C11 9ZY . . . E 4 5.766 34.161 0.258 1 42.8 ? C11 9ZY 403 A 1 
HETATM 11 C C12 9ZY . . . E 4 5.868 35.463 0.705 1 42.01 ? C12 9ZY 403 A 1 
HETATM 12 C C13 9ZY . . . E 4 7.406 34.434 -3.173 1 48.64 ? C13 9ZY 403 A 1 
HETATM 13 C C14 9ZY . . . E 4 7.732 41.083 -0.364 1 32.5 ? C14 9ZY 403 A 1 
HETATM 14 C C15 9ZY . . . E 4 7.338 41.469 -1.639 1 31.65 ? C15 9ZY 403 A 1 
HETATM 15 O O2 9ZY . . . E 4 8.589 33.921 -3.254 1 51.24 ? O2 9ZY 403 A 1 
HETATM 16 CL CL 9ZY . . . E 4 6.147 32.161 -1.487 1 55.39 ? CL 9ZY 403 A 1 
HETATM 17 O O1 9ZY . . . E 4 6.057 37.558 2.705 1 37.52 ? O1 9ZY 403 A 1 
HETATM 18 C C3 9ZY . . . E 4 5.817 38.268 3.914 1 38.06 ? C3 9ZY 403 A 1 
HETATM 19 O O 9ZY . . . E 4 5.437 37.617 4.855 1 38.33 ? O 9ZY 403 A 1 
HETATM 20 C C2 9ZY . . . E 4 6.085 39.687 3.918 1 36.84 ? C2 9ZY 403 A 1 
HETATM 21 N N 9ZY . . . E 4 7.126 38.739 -0.465 1 35.69 ? N 9ZY 403 A 1 
HETATM 22 C C1 9ZY . . . E 4 6.559 40.357 2.834 1 36.23 ? C1 9ZY 403 A 1 
HETATM 23 C C 9ZY . . . E 4 6.83 41.83 2.929 1 35.67 ? C 9ZY 403 A 1 
HETATM 24 C C19 9ZY . . . E 4 8.699 41.84 0.297 1 34.21 ? C19 9ZY 403 A 1 
HETATM 25 C C18 9ZY . . . E 4 9.261 42.947 -0.312 1 36.84 ? C18 9ZY 403 A 1 
HETATM 26 C C17 9ZY . . . E 4 8.878 43.306 -1.584 1 35.23 ? C17 9ZY 403 A 1 
HETATM 27 C C16 9ZY . . . E 4 7.924 42.566 -2.249 1 32.61 ? C16 9ZY 403 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#