data_5WBX # _model_server_result.job_id Bg_NpvpTYkLoeMvu6UuXcg _model_server_result.datetime_utc '2024-10-18 15:29:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1004}' # _entry.id 5WBX # _exptl.entry_id 5WBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.84 _cell.angle_gamma 90 _cell.entry_id 5WBX _cell.length_a 77.328 _cell.length_b 66.091 _cell.length_c 65.435 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 19 R ASP 20 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 B OD1 ASP 21 R ASP 22 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 B OD1 ASP 23 R ASP 24 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 B O THR 25 R THR 26 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc5 B OE1 GLU 30 R GLU 31 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc6 B OE2 GLU 30 R GLU 31 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc7 B OD1 ASP 55 R ASP 56 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 B OD1 ASP 57 R ASP 58 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc9 B OD1 ASN 59 R ASN 60 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc10 B O THR 61 R THR 62 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc11 B OE1 GLU 66 R GLU 67 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc12 B OE2 GLU 66 R GLU 67 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc13 H CA CA . R CA 1001 1_555 M O HOH . R HOH 1169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc14 I CA CA . R CA 1002 1_555 M O HOH . R HOH 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc15 I CA CA . R CA 1002 1_555 M O HOH . R HOH 1171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 5WBX _atom_sites.fract_transf_matrix[1][1] 0.012932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000868 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 B 1 501 1 SO4 SO4 . D 3 SO4 B 1 502 2 SO4 SO4 . E 3 SO4 B 1 503 3 SO4 SO4 . F 3 SO4 B 1 504 4 SO4 SO4 . G 4 GOL B 1 505 2 GOL GOL . H 5 CA R 1 1001 1001 CA CA . I 5 CA R 1 1002 1002 CA CA . J 6 AJY R 1 1003 1 AJY XXX . K 4 GOL R 1 1004 1 GOL GOL . L 7 HOH B 1 601 218 HOH HOH . L 7 HOH B 2 602 125 HOH HOH . L 7 HOH B 3 603 153 HOH HOH . L 7 HOH B 4 604 84 HOH HOH . L 7 HOH B 5 605 40 HOH HOH . L 7 HOH B 6 606 73 HOH HOH . L 7 HOH B 7 607 18 HOH HOH . L 7 HOH B 8 608 143 HOH HOH . L 7 HOH B 9 609 206 HOH HOH . L 7 HOH B 10 610 52 HOH HOH . L 7 HOH B 11 611 155 HOH HOH . L 7 HOH B 12 612 13 HOH HOH . L 7 HOH B 13 613 19 HOH HOH . L 7 HOH B 14 614 21 HOH HOH . L 7 HOH B 15 615 88 HOH HOH . L 7 HOH B 16 616 55 HOH HOH . L 7 HOH B 17 617 78 HOH HOH . L 7 HOH B 18 618 74 HOH HOH . L 7 HOH B 19 619 70 HOH HOH . L 7 HOH B 20 620 124 HOH HOH . L 7 HOH B 21 621 25 HOH HOH . L 7 HOH B 22 622 15 HOH HOH . L 7 HOH B 23 623 27 HOH HOH . L 7 HOH B 24 624 10 HOH HOH . L 7 HOH B 25 625 29 HOH HOH . L 7 HOH B 26 626 183 HOH HOH . L 7 HOH B 27 627 144 HOH HOH . L 7 HOH B 28 628 30 HOH HOH . L 7 HOH B 29 629 42 HOH HOH . L 7 HOH B 30 630 182 HOH HOH . L 7 HOH B 31 631 118 HOH HOH . L 7 HOH B 32 632 114 HOH HOH . L 7 HOH B 33 633 36 HOH HOH . L 7 HOH B 34 634 184 HOH HOH . L 7 HOH B 35 635 150 HOH HOH . L 7 HOH B 36 636 53 HOH HOH . L 7 HOH B 37 637 4 HOH HOH . L 7 HOH B 38 638 222 HOH HOH . L 7 HOH B 39 639 98 HOH HOH . L 7 HOH B 40 640 123 HOH HOH . L 7 HOH B 41 641 34 HOH HOH . L 7 HOH B 42 642 57 HOH HOH . L 7 HOH B 43 643 116 HOH HOH . L 7 HOH B 44 644 96 HOH HOH . L 7 HOH B 45 645 149 HOH HOH . L 7 HOH B 46 646 190 HOH HOH . L 7 HOH B 47 647 121 HOH HOH . L 7 HOH B 48 648 97 HOH HOH . L 7 HOH B 49 649 188 HOH HOH . L 7 HOH B 50 650 148 HOH HOH . L 7 HOH B 51 651 189 HOH HOH . L 7 HOH B 52 652 127 HOH HOH . L 7 HOH B 53 653 120 HOH HOH . L 7 HOH B 54 654 220 HOH HOH . L 7 HOH B 55 655 145 HOH HOH . L 7 HOH B 56 656 154 HOH HOH . L 7 HOH B 57 657 216 HOH HOH . L 7 HOH B 58 658 187 HOH HOH . L 7 HOH B 59 659 221 HOH HOH . L 7 HOH B 60 660 186 HOH HOH . L 7 HOH B 61 661 192 HOH HOH . L 7 HOH B 62 662 219 HOH HOH . L 7 HOH B 63 663 95 HOH HOH . L 7 HOH B 64 664 217 HOH HOH . L 7 HOH B 65 665 122 HOH HOH . L 7 HOH B 66 666 191 HOH HOH . L 7 HOH B 67 667 204 HOH HOH . L 7 HOH B 68 668 210 HOH HOH . L 7 HOH B 69 669 205 HOH HOH . L 7 HOH B 70 670 113 HOH HOH . L 7 HOH B 71 671 86 HOH HOH . L 7 HOH B 72 672 195 HOH HOH . L 7 HOH B 73 673 101 HOH HOH . L 7 HOH B 74 674 128 HOH HOH . L 7 HOH B 75 675 157 HOH HOH . M 7 HOH R 1 1101 72 HOH HOH . M 7 HOH R 2 1102 172 HOH HOH . M 7 HOH R 3 1103 159 HOH HOH . M 7 HOH R 4 1104 214 HOH HOH . M 7 HOH R 5 1105 49 HOH HOH . M 7 HOH R 6 1106 178 HOH HOH . M 7 HOH R 7 1107 137 HOH HOH . M 7 HOH R 8 1108 106 HOH HOH . M 7 HOH R 9 1109 166 HOH HOH . M 7 HOH R 10 1110 8 HOH HOH . M 7 HOH R 11 1111 103 HOH HOH . M 7 HOH R 12 1112 89 HOH HOH . M 7 HOH R 13 1113 163 HOH HOH . M 7 HOH R 14 1114 107 HOH HOH . M 7 HOH R 15 1115 16 HOH HOH . M 7 HOH R 16 1116 173 HOH HOH . M 7 HOH R 17 1117 119 HOH HOH . M 7 HOH R 18 1118 44 HOH HOH . M 7 HOH R 19 1119 199 HOH HOH . M 7 HOH R 20 1120 139 HOH HOH . M 7 HOH R 21 1121 5 HOH HOH . M 7 HOH R 22 1122 170 HOH HOH . M 7 HOH R 23 1123 43 HOH HOH . M 7 HOH R 24 1124 50 HOH HOH . M 7 HOH R 25 1125 54 HOH HOH . M 7 HOH R 26 1126 151 HOH HOH . M 7 HOH R 27 1127 99 HOH HOH . M 7 HOH R 28 1128 3 HOH HOH . M 7 HOH R 29 1129 7 HOH HOH . M 7 HOH R 30 1130 77 HOH HOH . M 7 HOH R 31 1131 1 HOH HOH . M 7 HOH R 32 1132 26 HOH HOH . M 7 HOH R 33 1133 156 HOH HOH . M 7 HOH R 34 1134 62 HOH HOH . M 7 HOH R 35 1135 224 HOH HOH . M 7 HOH R 36 1136 213 HOH HOH . M 7 HOH R 37 1137 23 HOH HOH . M 7 HOH R 38 1138 181 HOH HOH . M 7 HOH R 39 1139 76 HOH HOH . M 7 HOH R 40 1140 102 HOH HOH . M 7 HOH R 41 1141 41 HOH HOH . M 7 HOH R 42 1142 2 HOH HOH . M 7 HOH R 43 1143 38 HOH HOH . M 7 HOH R 44 1144 104 HOH HOH . M 7 HOH R 45 1145 31 HOH HOH . M 7 HOH R 46 1146 126 HOH HOH . M 7 HOH R 47 1147 136 HOH HOH . M 7 HOH R 48 1148 17 HOH HOH . M 7 HOH R 49 1149 185 HOH HOH . M 7 HOH R 50 1150 85 HOH HOH . M 7 HOH R 51 1151 22 HOH HOH . M 7 HOH R 52 1152 198 HOH HOH . M 7 HOH R 53 1153 11 HOH HOH . M 7 HOH R 54 1154 46 HOH HOH . M 7 HOH R 55 1155 56 HOH HOH . M 7 HOH R 56 1156 130 HOH HOH . M 7 HOH R 57 1157 65 HOH HOH . M 7 HOH R 58 1158 9 HOH HOH . M 7 HOH R 59 1159 6 HOH HOH . M 7 HOH R 60 1160 147 HOH HOH . M 7 HOH R 61 1161 64 HOH HOH . M 7 HOH R 62 1162 51 HOH HOH . M 7 HOH R 63 1163 33 HOH HOH . M 7 HOH R 64 1164 58 HOH HOH . M 7 HOH R 65 1165 142 HOH HOH . M 7 HOH R 66 1166 45 HOH HOH . M 7 HOH R 67 1167 160 HOH HOH . M 7 HOH R 68 1168 81 HOH HOH . M 7 HOH R 69 1169 14 HOH HOH . M 7 HOH R 70 1170 129 HOH HOH . M 7 HOH R 71 1171 203 HOH HOH . M 7 HOH R 72 1172 63 HOH HOH . M 7 HOH R 73 1173 68 HOH HOH . M 7 HOH R 74 1174 82 HOH HOH . M 7 HOH R 75 1175 69 HOH HOH . M 7 HOH R 76 1176 105 HOH HOH . M 7 HOH R 77 1177 66 HOH HOH . M 7 HOH R 78 1178 200 HOH HOH . M 7 HOH R 79 1179 80 HOH HOH . M 7 HOH R 80 1180 169 HOH HOH . M 7 HOH R 81 1181 79 HOH HOH . M 7 HOH R 82 1182 37 HOH HOH . M 7 HOH R 83 1183 108 HOH HOH . M 7 HOH R 84 1184 71 HOH HOH . M 7 HOH R 85 1185 134 HOH HOH . M 7 HOH R 86 1186 59 HOH HOH . M 7 HOH R 87 1187 67 HOH HOH . M 7 HOH R 88 1188 12 HOH HOH . M 7 HOH R 89 1189 24 HOH HOH . M 7 HOH R 90 1190 100 HOH HOH . M 7 HOH R 91 1191 215 HOH HOH . M 7 HOH R 92 1192 193 HOH HOH . M 7 HOH R 93 1193 146 HOH HOH . M 7 HOH R 94 1194 48 HOH HOH . M 7 HOH R 95 1195 202 HOH HOH . M 7 HOH R 96 1196 196 HOH HOH . M 7 HOH R 97 1197 167 HOH HOH . M 7 HOH R 98 1198 93 HOH HOH . M 7 HOH R 99 1199 132 HOH HOH . M 7 HOH R 100 1200 47 HOH HOH . M 7 HOH R 101 1201 152 HOH HOH . M 7 HOH R 102 1202 179 HOH HOH . M 7 HOH R 103 1203 75 HOH HOH . M 7 HOH R 104 1204 35 HOH HOH . M 7 HOH R 105 1205 180 HOH HOH . M 7 HOH R 106 1206 61 HOH HOH . M 7 HOH R 107 1207 20 HOH HOH . M 7 HOH R 108 1208 174 HOH HOH . M 7 HOH R 109 1209 112 HOH HOH . M 7 HOH R 110 1210 168 HOH HOH . M 7 HOH R 111 1211 90 HOH HOH . M 7 HOH R 112 1212 138 HOH HOH . M 7 HOH R 113 1213 133 HOH HOH . M 7 HOH R 114 1214 141 HOH HOH . M 7 HOH R 115 1215 60 HOH HOH . M 7 HOH R 116 1216 208 HOH HOH . M 7 HOH R 117 1217 177 HOH HOH . M 7 HOH R 118 1218 201 HOH HOH . M 7 HOH R 119 1219 117 HOH HOH . M 7 HOH R 120 1220 197 HOH HOH . M 7 HOH R 121 1221 164 HOH HOH . M 7 HOH R 122 1222 39 HOH HOH . M 7 HOH R 123 1223 109 HOH HOH . M 7 HOH R 124 1224 32 HOH HOH . M 7 HOH R 125 1225 207 HOH HOH . M 7 HOH R 126 1226 209 HOH HOH . M 7 HOH R 127 1227 140 HOH HOH . M 7 HOH R 128 1228 83 HOH HOH . M 7 HOH R 129 1229 175 HOH HOH . M 7 HOH R 130 1230 223 HOH HOH . M 7 HOH R 131 1231 135 HOH HOH . M 7 HOH R 132 1232 161 HOH HOH . M 7 HOH R 133 1233 94 HOH HOH . M 7 HOH R 134 1234 131 HOH HOH . M 7 HOH R 135 1235 158 HOH HOH . M 7 HOH R 136 1236 115 HOH HOH . M 7 HOH R 137 1237 211 HOH HOH . M 7 HOH R 138 1238 111 HOH HOH . M 7 HOH R 139 1239 162 HOH HOH . M 7 HOH R 140 1240 91 HOH HOH . M 7 HOH R 141 1241 176 HOH HOH . M 7 HOH R 142 1242 165 HOH HOH . M 7 HOH R 143 1243 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 4 28.746 7.715 9.243 1 35.59 ? C1 GOL 1004 R 1 HETATM 2 O O1 GOL . . . K 4 28.444 8.615 8.198 1 26.33 ? O1 GOL 1004 R 1 HETATM 3 C C2 GOL . . . K 4 29.888 8.27 10.067 1 47.47 ? C2 GOL 1004 R 1 HETATM 4 O O2 GOL . . . K 4 29.376 8.924 11.203 1 64.13 ? O2 GOL 1004 R 1 HETATM 5 C C3 GOL . . . K 4 30.834 7.148 10.467 1 48.87 ? C3 GOL 1004 R 1 HETATM 6 O O3 GOL . . . K 4 31.972 7.201 9.638 1 55.58 ? O3 GOL 1004 R 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #