data_5WBZ # _model_server_result.job_id zCvXJq7Ni62BWSeshpIuMA _model_server_result.datetime_utc '2024-12-21 16:37:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5WBZ # _exptl.entry_id 5WBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(3S,4S)-3,4-dihydroxypyrrolidin-1-yl]-2-[(3S)-3-hydroxy-3-methylpyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WBZ _cell.length_a 83.18 _cell.length_b 86.38 _cell.length_c 137.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C16 H19 F3 N4 O3' _chem_comp.formula_weight 372.342 _chem_comp.id A4J _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(3S,4S)-3,4-dihydroxypyrrolidin-1-yl]-2-[(3S)-3-hydroxy-3-methylpyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C2 A4J sing 1 n n C1 C2 A4J sing 2 n n C2 C5 A4J sing 3 n n C2 C3 A4J sing 4 n n C5 N1 A4J sing 5 n n C3 C4 A4J sing 6 n n N4 C16 A4J trip 7 n n N1 C4 A4J sing 8 n n N1 C6 A4J sing 9 n n C16 C7 A4J sing 10 n n F2 C15 A4J sing 11 n n C6 C7 A4J doub 12 n y C6 N2 A4J sing 13 n y C7 C8 A4J sing 14 n y N2 C10 A4J doub 15 n y C8 C15 A4J sing 16 n n C8 C9 A4J doub 17 n y C15 F1 A4J sing 18 n n C15 F3 A4J sing 19 n n C10 C9 A4J sing 20 n y C10 N3 A4J sing 21 n n O2 C12 A4J sing 22 n n C14 N3 A4J sing 23 n n C14 C13 A4J sing 24 n n N3 C11 A4J sing 25 n n C12 C13 A4J sing 26 n n C12 C11 A4J sing 27 n n C13 O1 A4J sing 28 n n C4 H9 A4J sing 29 n n C4 H8 A4J sing 30 n n C9 H12 A4J sing 31 n n C13 H2 A4J sing 32 n n C1 H3 A4J sing 33 n n C1 H5 A4J sing 34 n n C1 H4 A4J sing 35 n n C3 H7 A4J sing 36 n n C3 H6 A4J sing 37 n n C5 H11 A4J sing 38 n n C5 H10 A4J sing 39 n n C11 H14 A4J sing 40 n n C11 H13 A4J sing 41 n n C12 H1 A4J sing 42 n n C14 H16 A4J sing 43 n n C14 H15 A4J sing 44 n n O1 H17 A4J sing 45 n n O2 H18 A4J sing 46 n n O3 H19 A4J sing 47 n n # _atom_sites.entry_id 5WBZ _atom_sites.fract_transf_matrix[1][1] 0.012022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A4J A 1 301 1 A4J PFE . D 3 SO4 A 1 302 2 SO4 SO4 . E 4 CIT A 1 303 1 CIT CIT . F 2 A4J B 1 301 2 A4J PFE . G 3 SO4 B 1 302 1 SO4 SO4 . H 3 SO4 B 1 303 3 SO4 SO4 . I 4 CIT B 1 304 2 CIT CIT . J 5 HOH A 1 401 89 HOH HOH . J 5 HOH A 2 402 66 HOH HOH . J 5 HOH A 3 403 28 HOH HOH . J 5 HOH A 4 404 92 HOH HOH . J 5 HOH A 5 405 151 HOH HOH . J 5 HOH A 6 406 107 HOH HOH . J 5 HOH A 7 407 127 HOH HOH . J 5 HOH A 8 408 12 HOH HOH . J 5 HOH A 9 409 90 HOH HOH . J 5 HOH A 10 410 22 HOH HOH . J 5 HOH A 11 411 105 HOH HOH . J 5 HOH A 12 412 118 HOH HOH . J 5 HOH A 13 413 128 HOH HOH . J 5 HOH A 14 414 30 HOH HOH . J 5 HOH A 15 415 88 HOH HOH . J 5 HOH A 16 416 53 HOH HOH . J 5 HOH A 17 417 91 HOH HOH . J 5 HOH A 18 418 6 HOH HOH . J 5 HOH A 19 419 86 HOH HOH . J 5 HOH A 20 420 44 HOH HOH . J 5 HOH A 21 421 41 HOH HOH . J 5 HOH A 22 422 122 HOH HOH . J 5 HOH A 23 423 115 HOH HOH . J 5 HOH A 24 424 119 HOH HOH . J 5 HOH A 25 425 27 HOH HOH . J 5 HOH A 26 426 14 HOH HOH . J 5 HOH A 27 427 67 HOH HOH . J 5 HOH A 28 428 78 HOH HOH . J 5 HOH A 29 429 120 HOH HOH . J 5 HOH A 30 430 43 HOH HOH . J 5 HOH A 31 431 48 HOH HOH . J 5 HOH A 32 432 39 HOH HOH . J 5 HOH A 33 433 147 HOH HOH . J 5 HOH A 34 434 47 HOH HOH . J 5 HOH A 35 435 173 HOH HOH . J 5 HOH A 36 436 106 HOH HOH . J 5 HOH A 37 437 2 HOH HOH . J 5 HOH A 38 438 77 HOH HOH . J 5 HOH A 39 439 149 HOH HOH . J 5 HOH A 40 440 1 HOH HOH . J 5 HOH A 41 441 73 HOH HOH . J 5 HOH A 42 442 84 HOH HOH . J 5 HOH A 43 443 171 HOH HOH . J 5 HOH A 44 444 38 HOH HOH . J 5 HOH A 45 445 61 HOH HOH . J 5 HOH A 46 446 110 HOH HOH . J 5 HOH A 47 447 70 HOH HOH . J 5 HOH A 48 448 96 HOH HOH . J 5 HOH A 49 449 124 HOH HOH . J 5 HOH A 50 450 126 HOH HOH . J 5 HOH A 51 451 85 HOH HOH . J 5 HOH A 52 452 62 HOH HOH . J 5 HOH A 53 453 114 HOH HOH . J 5 HOH A 54 454 108 HOH HOH . J 5 HOH A 55 455 46 HOH HOH . J 5 HOH A 56 456 71 HOH HOH . J 5 HOH A 57 457 33 HOH HOH . J 5 HOH A 58 458 150 HOH HOH . J 5 HOH A 59 459 154 HOH HOH . J 5 HOH A 60 460 23 HOH HOH . J 5 HOH A 61 461 159 HOH HOH . J 5 HOH A 62 462 172 HOH HOH . J 5 HOH A 63 463 87 HOH HOH . J 5 HOH A 64 464 8 HOH HOH . J 5 HOH A 65 465 145 HOH HOH . J 5 HOH A 66 466 123 HOH HOH . J 5 HOH A 67 467 42 HOH HOH . J 5 HOH A 68 468 175 HOH HOH . J 5 HOH A 69 469 155 HOH HOH . J 5 HOH A 70 470 80 HOH HOH . J 5 HOH A 71 471 152 HOH HOH . J 5 HOH A 72 472 174 HOH HOH . J 5 HOH A 73 473 98 HOH HOH . J 5 HOH A 74 474 176 HOH HOH . J 5 HOH A 75 475 153 HOH HOH . J 5 HOH A 76 476 170 HOH HOH . J 5 HOH A 77 477 82 HOH HOH . J 5 HOH A 78 478 83 HOH HOH . K 5 HOH B 1 401 138 HOH HOH . K 5 HOH B 2 402 177 HOH HOH . K 5 HOH B 3 403 165 HOH HOH . K 5 HOH B 4 404 139 HOH HOH . K 5 HOH B 5 405 13 HOH HOH . K 5 HOH B 6 406 142 HOH HOH . K 5 HOH B 7 407 54 HOH HOH . K 5 HOH B 8 408 29 HOH HOH . K 5 HOH B 9 409 75 HOH HOH . K 5 HOH B 10 410 99 HOH HOH . K 5 HOH B 11 411 16 HOH HOH . K 5 HOH B 12 412 17 HOH HOH . K 5 HOH B 13 413 95 HOH HOH . K 5 HOH B 14 414 24 HOH HOH . K 5 HOH B 15 415 31 HOH HOH . K 5 HOH B 16 416 37 HOH HOH . K 5 HOH B 17 417 50 HOH HOH . K 5 HOH B 18 418 130 HOH HOH . K 5 HOH B 19 419 65 HOH HOH . K 5 HOH B 20 420 81 HOH HOH . K 5 HOH B 21 421 143 HOH HOH . K 5 HOH B 22 422 136 HOH HOH . K 5 HOH B 23 423 19 HOH HOH . K 5 HOH B 24 424 104 HOH HOH . K 5 HOH B 25 425 94 HOH HOH . K 5 HOH B 26 426 129 HOH HOH . K 5 HOH B 27 427 56 HOH HOH . K 5 HOH B 28 428 10 HOH HOH . K 5 HOH B 29 429 20 HOH HOH . K 5 HOH B 30 430 93 HOH HOH . K 5 HOH B 31 431 113 HOH HOH . K 5 HOH B 32 432 157 HOH HOH . K 5 HOH B 33 433 64 HOH HOH . K 5 HOH B 34 434 55 HOH HOH . K 5 HOH B 35 435 148 HOH HOH . K 5 HOH B 36 436 158 HOH HOH . K 5 HOH B 37 437 141 HOH HOH . K 5 HOH B 38 438 49 HOH HOH . K 5 HOH B 39 439 100 HOH HOH . K 5 HOH B 40 440 168 HOH HOH . K 5 HOH B 41 441 51 HOH HOH . K 5 HOH B 42 442 9 HOH HOH . K 5 HOH B 43 443 26 HOH HOH . K 5 HOH B 44 444 156 HOH HOH . K 5 HOH B 45 445 97 HOH HOH . K 5 HOH B 46 446 34 HOH HOH . K 5 HOH B 47 447 36 HOH HOH . K 5 HOH B 48 448 167 HOH HOH . K 5 HOH B 49 449 69 HOH HOH . K 5 HOH B 50 450 3 HOH HOH . K 5 HOH B 51 451 11 HOH HOH . K 5 HOH B 52 452 4 HOH HOH . K 5 HOH B 53 453 140 HOH HOH . K 5 HOH B 54 454 5 HOH HOH . K 5 HOH B 55 455 121 HOH HOH . K 5 HOH B 56 456 72 HOH HOH . K 5 HOH B 57 457 32 HOH HOH . K 5 HOH B 58 458 76 HOH HOH . K 5 HOH B 59 459 68 HOH HOH . K 5 HOH B 60 460 45 HOH HOH . K 5 HOH B 61 461 57 HOH HOH . K 5 HOH B 62 462 60 HOH HOH . K 5 HOH B 63 463 112 HOH HOH . K 5 HOH B 64 464 21 HOH HOH . K 5 HOH B 65 465 58 HOH HOH . K 5 HOH B 66 466 35 HOH HOH . K 5 HOH B 67 467 18 HOH HOH . K 5 HOH B 68 468 117 HOH HOH . K 5 HOH B 69 469 163 HOH HOH . K 5 HOH B 70 470 144 HOH HOH . K 5 HOH B 71 471 79 HOH HOH . K 5 HOH B 72 472 134 HOH HOH . K 5 HOH B 73 473 63 HOH HOH . K 5 HOH B 74 474 164 HOH HOH . K 5 HOH B 75 475 25 HOH HOH . K 5 HOH B 76 476 101 HOH HOH . K 5 HOH B 77 477 166 HOH HOH . K 5 HOH B 78 478 52 HOH HOH . K 5 HOH B 79 479 146 HOH HOH . K 5 HOH B 80 480 161 HOH HOH . K 5 HOH B 81 481 131 HOH HOH . K 5 HOH B 82 482 15 HOH HOH . K 5 HOH B 83 483 7 HOH HOH . K 5 HOH B 84 484 102 HOH HOH . K 5 HOH B 85 485 59 HOH HOH . K 5 HOH B 86 486 116 HOH HOH . K 5 HOH B 87 487 137 HOH HOH . K 5 HOH B 88 488 103 HOH HOH . K 5 HOH B 89 489 111 HOH HOH . K 5 HOH B 90 490 162 HOH HOH . K 5 HOH B 91 491 132 HOH HOH . K 5 HOH B 92 492 109 HOH HOH . K 5 HOH B 93 493 40 HOH HOH . K 5 HOH B 94 494 160 HOH HOH . K 5 HOH B 95 495 135 HOH HOH . K 5 HOH B 96 496 169 HOH HOH . K 5 HOH B 97 497 125 HOH HOH . K 5 HOH B 98 498 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 A4J . . . C 2 -7.626 -1.179 21.646 1 58.56 ? N3 A4J 301 A 1 HETATM 2 C C4 A4J . . . C 2 -5.092 1.692 19.018 1 48.74 ? C4 A4J 301 A 1 HETATM 3 N N2 A4J . . . C 2 -5.95 -0.478 20.262 1 54.53 ? N2 A4J 301 A 1 HETATM 4 C C7 A4J . . . C 2 -4.002 -1.852 19.712 1 55.79 ? C7 A4J 301 A 1 HETATM 5 C C6 A4J . . . C 2 -4.782 -0.65 19.635 1 52.92 ? C6 A4J 301 A 1 HETATM 6 C C9 A4J . . . C 2 -5.776 -2.67 21.194 1 55.66 ? C9 A4J 301 A 1 HETATM 7 C C13 A4J . . . C 2 -9.426 0.056 22.468 1 59.61 ? C13 A4J 301 A 1 HETATM 8 C C8 A4J . . . C 2 -4.577 -2.858 20.511 1 56.96 ? C8 A4J 301 A 1 HETATM 9 C C16 A4J . . . C 2 -2.709 -2.056 19.123 1 54.94 ? C16 A4J 301 A 1 HETATM 10 C C1 A4J . . . C 2 -2.723 2.182 16.173 1 49.75 ? C1 A4J 301 A 1 HETATM 11 C C2 A4J . . . C 2 -3.889 1.63 16.98 1 49.94 ? C2 A4J 301 A 1 HETATM 12 C C3 A4J . . . C 2 -4.41 2.612 18.02 1 48.59 ? C3 A4J 301 A 1 HETATM 13 N N1 A4J . . . C 2 -4.326 0.443 18.95 1 51.79 ? N1 A4J 301 A 1 HETATM 14 C C5 A4J . . . C 2 -3.485 0.393 17.76 1 52.47 ? C5 A4J 301 A 1 HETATM 15 C C10 A4J . . . C 2 -6.436 -1.448 21.037 1 55.93 ? C10 A4J 301 A 1 HETATM 16 C C11 A4J . . . C 2 -8.412 -2.094 22.487 1 59.56 ? C11 A4J 301 A 1 HETATM 17 C C12 A4J . . . C 2 -9.781 -1.44 22.414 1 60.73 ? C12 A4J 301 A 1 HETATM 18 C C14 A4J . . . C 2 -8.262 0.14 21.497 1 59.34 ? C14 A4J 301 A 1 HETATM 19 O O1 A4J . . . C 2 -8.997 0.437 23.778 1 58.58 ? O1 A4J 301 A 1 HETATM 20 O O2 A4J . . . C 2 -10.386 -1.722 21.149 1 63.93 ? O2 A4J 301 A 1 HETATM 21 C C15 A4J . . . C 2 -3.909 -4.202 20.638 1 57.54 ? C15 A4J 301 A 1 HETATM 22 F F1 A4J . . . C 2 -4.667 -5.098 21.244 1 58.89 ? F1 A4J 301 A 1 HETATM 23 F F2 A4J . . . C 2 -3.62 -4.744 19.446 1 59.45 ? F2 A4J 301 A 1 HETATM 24 F F3 A4J . . . C 2 -2.77 -4.143 21.358 1 55.06 ? F3 A4J 301 A 1 HETATM 25 N N4 A4J . . . C 2 -1.673 -2.182 18.671 1 53.99 ? N4 A4J 301 A 1 HETATM 26 O O3 A4J . . . C 2 -4.941 1.239 16.087 1 52.7 ? O3 A4J 301 A 1 HETATM 27 H H9 A4J . . . C 2 -6.139 1.555 18.752 1 48.93 ? H9 A4J 301 A 1 HETATM 28 H H8 A4J . . . C 2 -5.105 2.137 20.012 1 48.5 ? H8 A4J 301 A 1 HETATM 29 H H12 A4J . . . C 2 -6.185 -3.436 21.85 1 55.84 ? H12 A4J 301 A 1 HETATM 30 H H2 A4J . . . C 2 -10.274 0.662 22.152 1 59.38 ? H2 A4J 301 A 1 HETATM 31 H H3 A4J . . . C 2 -2.238 1.402 15.589 1 49.91 ? H3 A4J 301 A 1 HETATM 32 H H5 A4J . . . C 2 -1.96 2.626 16.811 1 49.52 ? H5 A4J 301 A 1 HETATM 33 H H4 A4J . . . C 2 -3.04 2.953 15.472 1 49.84 ? H4 A4J 301 A 1 HETATM 34 H H7 A4J . . . C 2 -5.073 3.382 17.628 1 47.66 ? H7 A4J 301 A 1 HETATM 35 H H6 A4J . . . C 2 -3.594 3.153 18.492 1 49.24 ? H6 A4J 301 A 1 HETATM 36 H H11 A4J . . . C 2 -2.441 0.44 18.066 1 52.91 ? H11 A4J 301 A 1 HETATM 37 H H10 A4J . . . C 2 -3.584 -0.522 17.179 1 52.58 ? H10 A4J 301 A 1 HETATM 38 H H14 A4J . . . C 2 -8.022 -2.137 23.503 1 59.27 ? H14 A4J 301 A 1 HETATM 39 H H13 A4J . . . C 2 -8.419 -3.117 22.115 1 59.68 ? H13 A4J 301 A 1 HETATM 40 H H1 A4J . . . C 2 -10.42 -1.726 23.247 1 60.43 ? H1 A4J 301 A 1 HETATM 41 H H16 A4J . . . C 2 -8.581 0.372 20.482 1 59.13 ? H16 A4J 301 A 1 HETATM 42 H H15 A4J . . . C 2 -7.562 0.931 21.765 1 59.53 ? H15 A4J 301 A 1 HETATM 43 H H17 A4J . . . C 2 -8.833 1.416 23.74 1 58.54 ? H17 A4J 301 A 1 HETATM 44 H H18 A4J . . . C 2 -11.24 -1.216 21.119 1 64.44 ? H18 A4J 301 A 1 HETATM 45 H H19 A4J . . . C 2 -4.57 0.581 15.442 1 53.42 ? H19 A4J 301 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #