data_5WC2 # _model_server_result.job_id B1AIGci1U3dgIyW6udyAvg _model_server_result.datetime_utc '2024-11-29 08:03:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5WC2 # _exptl.entry_id 5WC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WC2 _cell.length_a 98.369 _cell.length_b 98.369 _cell.length_c 122.109 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5WC2 _atom_sites.fract_transf_matrix[1][1] 0.010166 _atom_sites.fract_transf_matrix[1][2] 0.005869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 501 ADP ADP . C 3 HOH A 1 601 80 HOH HOH . C 3 HOH A 2 602 128 HOH HOH . C 3 HOH A 3 603 90 HOH HOH . C 3 HOH A 4 604 102 HOH HOH . C 3 HOH A 5 605 131 HOH HOH . C 3 HOH A 6 606 130 HOH HOH . C 3 HOH A 7 607 96 HOH HOH . C 3 HOH A 8 608 29 HOH HOH . C 3 HOH A 9 609 116 HOH HOH . C 3 HOH A 10 610 115 HOH HOH . C 3 HOH A 11 611 77 HOH HOH . C 3 HOH A 12 612 10 HOH HOH . C 3 HOH A 13 613 71 HOH HOH . C 3 HOH A 14 614 23 HOH HOH . C 3 HOH A 15 615 50 HOH HOH . C 3 HOH A 16 616 39 HOH HOH . C 3 HOH A 17 617 48 HOH HOH . C 3 HOH A 18 618 8 HOH HOH . C 3 HOH A 19 619 12 HOH HOH . C 3 HOH A 20 620 99 HOH HOH . C 3 HOH A 21 621 4 HOH HOH . C 3 HOH A 22 622 31 HOH HOH . C 3 HOH A 23 623 25 HOH HOH . C 3 HOH A 24 624 67 HOH HOH . C 3 HOH A 25 625 106 HOH HOH . C 3 HOH A 26 626 43 HOH HOH . C 3 HOH A 27 627 3 HOH HOH . C 3 HOH A 28 628 37 HOH HOH . C 3 HOH A 29 629 16 HOH HOH . C 3 HOH A 30 630 7 HOH HOH . C 3 HOH A 31 631 24 HOH HOH . C 3 HOH A 32 632 81 HOH HOH . C 3 HOH A 33 633 35 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 63 HOH HOH . C 3 HOH A 36 636 6 HOH HOH . C 3 HOH A 37 637 53 HOH HOH . C 3 HOH A 38 638 49 HOH HOH . C 3 HOH A 39 639 44 HOH HOH . C 3 HOH A 40 640 11 HOH HOH . C 3 HOH A 41 641 22 HOH HOH . C 3 HOH A 42 642 60 HOH HOH . C 3 HOH A 43 643 2 HOH HOH . C 3 HOH A 44 644 42 HOH HOH . C 3 HOH A 45 645 98 HOH HOH . C 3 HOH A 46 646 78 HOH HOH . C 3 HOH A 47 647 113 HOH HOH . C 3 HOH A 48 648 129 HOH HOH . C 3 HOH A 49 649 79 HOH HOH . C 3 HOH A 50 650 27 HOH HOH . C 3 HOH A 51 651 52 HOH HOH . C 3 HOH A 52 652 62 HOH HOH . C 3 HOH A 53 653 21 HOH HOH . C 3 HOH A 54 654 126 HOH HOH . C 3 HOH A 55 655 88 HOH HOH . C 3 HOH A 56 656 105 HOH HOH . C 3 HOH A 57 657 13 HOH HOH . C 3 HOH A 58 658 59 HOH HOH . C 3 HOH A 59 659 1 HOH HOH . C 3 HOH A 60 660 32 HOH HOH . C 3 HOH A 61 661 26 HOH HOH . C 3 HOH A 62 662 18 HOH HOH . C 3 HOH A 63 663 57 HOH HOH . C 3 HOH A 64 664 73 HOH HOH . C 3 HOH A 65 665 15 HOH HOH . C 3 HOH A 66 666 56 HOH HOH . C 3 HOH A 67 667 92 HOH HOH . C 3 HOH A 68 668 14 HOH HOH . C 3 HOH A 69 669 46 HOH HOH . C 3 HOH A 70 670 47 HOH HOH . C 3 HOH A 71 671 30 HOH HOH . C 3 HOH A 72 672 33 HOH HOH . C 3 HOH A 73 673 101 HOH HOH . C 3 HOH A 74 674 74 HOH HOH . C 3 HOH A 75 675 133 HOH HOH . C 3 HOH A 76 676 111 HOH HOH . C 3 HOH A 77 677 100 HOH HOH . C 3 HOH A 78 678 97 HOH HOH . C 3 HOH A 79 679 110 HOH HOH . C 3 HOH A 80 680 138 HOH HOH . C 3 HOH A 81 681 89 HOH HOH . C 3 HOH A 82 682 9 HOH HOH . C 3 HOH A 83 683 68 HOH HOH . C 3 HOH A 84 684 82 HOH HOH . C 3 HOH A 85 685 72 HOH HOH . C 3 HOH A 86 686 19 HOH HOH . C 3 HOH A 87 687 76 HOH HOH . C 3 HOH A 88 688 83 HOH HOH . C 3 HOH A 89 689 122 HOH HOH . C 3 HOH A 90 690 38 HOH HOH . C 3 HOH A 91 691 104 HOH HOH . C 3 HOH A 92 692 17 HOH HOH . C 3 HOH A 93 693 94 HOH HOH . C 3 HOH A 94 694 58 HOH HOH . C 3 HOH A 95 695 55 HOH HOH . C 3 HOH A 96 696 112 HOH HOH . C 3 HOH A 97 697 91 HOH HOH . C 3 HOH A 98 698 124 HOH HOH . C 3 HOH A 99 699 5 HOH HOH . C 3 HOH A 100 700 69 HOH HOH . C 3 HOH A 101 701 108 HOH HOH . C 3 HOH A 102 702 61 HOH HOH . C 3 HOH A 103 703 28 HOH HOH . C 3 HOH A 104 704 120 HOH HOH . C 3 HOH A 105 705 123 HOH HOH . C 3 HOH A 106 706 54 HOH HOH . C 3 HOH A 107 707 40 HOH HOH . C 3 HOH A 108 708 103 HOH HOH . C 3 HOH A 109 709 93 HOH HOH . C 3 HOH A 110 710 125 HOH HOH . C 3 HOH A 111 711 36 HOH HOH . C 3 HOH A 112 712 86 HOH HOH . C 3 HOH A 113 713 64 HOH HOH . C 3 HOH A 114 714 107 HOH HOH . C 3 HOH A 115 715 109 HOH HOH . C 3 HOH A 116 716 70 HOH HOH . C 3 HOH A 117 717 114 HOH HOH . C 3 HOH A 118 718 20 HOH HOH . C 3 HOH A 119 719 51 HOH HOH . C 3 HOH A 120 720 136 HOH HOH . C 3 HOH A 121 721 127 HOH HOH . C 3 HOH A 122 722 65 HOH HOH . C 3 HOH A 123 723 118 HOH HOH . C 3 HOH A 124 724 132 HOH HOH . C 3 HOH A 125 725 84 HOH HOH . C 3 HOH A 126 726 41 HOH HOH . C 3 HOH A 127 727 66 HOH HOH . C 3 HOH A 128 728 137 HOH HOH . C 3 HOH A 129 729 45 HOH HOH . C 3 HOH A 130 730 75 HOH HOH . C 3 HOH A 131 731 135 HOH HOH . C 3 HOH A 132 732 121 HOH HOH . C 3 HOH A 133 733 95 HOH HOH . C 3 HOH A 134 734 134 HOH HOH . C 3 HOH A 135 735 85 HOH HOH . C 3 HOH A 136 736 87 HOH HOH . C 3 HOH A 137 737 119 HOH HOH . C 3 HOH A 138 738 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 49.048 110.319 -11.472 1 28.88 ? PB ADP 501 A 1 HETATM 2 O O1B ADP . . . B 2 48.61 110.82 -12.832 1 42.44 ? O1B ADP 501 A 1 HETATM 3 O O2B ADP . . . B 2 47.9 109.994 -10.534 1 33.79 ? O2B ADP 501 A 1 HETATM 4 O O3B ADP . . . B 2 50.133 109.263 -11.515 1 40.34 ? O3B ADP 501 A 1 HETATM 5 P PA ADP . . . B 2 49.52 112.199 -9.353 1 42.27 ? PA ADP 501 A 1 HETATM 6 O O1A ADP . . . B 2 48.166 112.855 -9.275 1 27.35 ? O1A ADP 501 A 1 HETATM 7 O O2A ADP . . . B 2 49.9 111.166 -8.328 1 34.51 ? O2A ADP 501 A 1 HETATM 8 O O3A ADP . . . B 2 49.799 111.596 -10.827 1 38.7 ? O3A ADP 501 A 1 HETATM 9 O O5' ADP . . . B 2 50.63 113.362 -9.346 1 37.4 ? O5' ADP 501 A 1 HETATM 10 C C5' ADP . . . B 2 51.318 113.681 -8.144 1 31.95 ? C5' ADP 501 A 1 HETATM 11 C C4' ADP . . . B 2 51.642 115.165 -8.094 1 25.4 ? C4' ADP 501 A 1 HETATM 12 O O4' ADP . . . B 2 52.364 115.619 -9.246 1 20.08 ? O4' ADP 501 A 1 HETATM 13 C C3' ADP . . . B 2 50.396 116.032 -8.06 1 25.59 ? C3' ADP 501 A 1 HETATM 14 O O3' ADP . . . B 2 49.801 116.111 -6.761 1 30.8 ? O3' ADP 501 A 1 HETATM 15 C C2' ADP . . . B 2 50.928 117.365 -8.534 1 22.29 ? C2' ADP 501 A 1 HETATM 16 O O2' ADP . . . B 2 51.439 118.128 -7.431 1 25.89 ? O2' ADP 501 A 1 HETATM 17 C C1' ADP . . . B 2 52.053 116.998 -9.491 1 16.84 ? C1' ADP 501 A 1 HETATM 18 N N9 ADP . . . B 2 51.527 117.18 -10.861 1 18.9 ? N9 ADP 501 A 1 HETATM 19 C C8 ADP . . . B 2 51.203 116.191 -11.722 1 18.09 ? C8 ADP 501 A 1 HETATM 20 N N7 ADP . . . B 2 50.733 116.711 -12.887 1 16.68 ? N7 ADP 501 A 1 HETATM 21 C C5 ADP . . . B 2 50.746 118.05 -12.763 1 14.19 ? C5 ADP 501 A 1 HETATM 22 C C6 ADP . . . B 2 50.379 119.194 -13.611 1 17.68 ? C6 ADP 501 A 1 HETATM 23 N N6 ADP . . . B 2 49.895 118.98 -14.853 1 17.14 ? N6 ADP 501 A 1 HETATM 24 N N1 ADP . . . B 2 50.547 120.439 -13.109 1 19.98 ? N1 ADP 501 A 1 HETATM 25 C C2 ADP . . . B 2 51.035 120.653 -11.875 1 19.33 ? C2 ADP 501 A 1 HETATM 26 N N3 ADP . . . B 2 51.39 119.653 -11.054 1 19.05 ? N3 ADP 501 A 1 HETATM 27 C C4 ADP . . . B 2 51.273 118.358 -11.432 1 17.41 ? C4 ADP 501 A 1 HETATM 28 H "H5'1" ADP . . . B 2 50.698 113.412 -7.286 1 38.42 ? "H5'1" ADP 501 A 1 HETATM 29 H "H5'2" ADP . . . B 2 52.242 113.103 -8.087 1 38.42 ? "H5'2" ADP 501 A 1 HETATM 30 H H4' ADP . . . B 2 52.23 115.364 -7.187 1 30.55 ? H4' ADP 501 A 1 HETATM 31 H H3' ADP . . . B 2 49.67 115.651 -8.792 1 30.79 ? H3' ADP 501 A 1 HETATM 32 H HO3' ADP . . . B 2 49.015 116.673 -6.8 1 37.04 ? HO3' ADP 501 A 1 HETATM 33 H H2' ADP . . . B 2 50.142 117.916 -9.07 1 26.82 ? H2' ADP 501 A 1 HETATM 34 H HO2' ADP . . . B 2 50.726 118.303 -6.802 1 31.15 ? HO2' ADP 501 A 1 HETATM 35 H H1' ADP . . . B 2 52.926 117.641 -9.311 1 20.28 ? H1' ADP 501 A 1 HETATM 36 H H8 ADP . . . B 2 51.311 115.134 -11.516 1 21.79 ? H8 ADP 501 A 1 HETATM 37 H HN61 ADP . . . B 2 49.646 119.763 -15.44 1 20.64 ? HN61 ADP 501 A 1 HETATM 38 H HN62 ADP . . . B 2 49.784 118.037 -15.196 1 20.64 ? HN62 ADP 501 A 1 HETATM 39 H H2 ADP . . . B 2 51.146 121.674 -11.53 1 23.28 ? H2 ADP 501 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1158 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 39 #