data_5WC5 # _model_server_result.job_id J32VFd8EUvo4VB1W88n4JA _model_server_result.datetime_utc '2024-11-22 20:55:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1002}' # _entry.id 5WC5 # _exptl.entry_id 5WC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.76 _cell.angle_gamma 90 _cell.entry_id 5WC5 _cell.length_a 76.994 _cell.length_b 66.015 _cell.length_c 65.298 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -4.282066 0 65.157446 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 19 R ASP 20 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 B OD1 ASP 21 R ASP 22 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 B OD1 ASP 23 R ASP 24 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 B O THR 25 R THR 26 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 B OE1 GLU 30 R GLU 31 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc6 B OE2 GLU 30 R GLU 31 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc7 B OD1 ASP 55 R ASP 56 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc8 B OD1 ASP 57 R ASP 58 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc9 B OD1 ASN 59 R ASN 60 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc10 B O THR 61 R THR 62 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc11 B OE1 GLU 66 R GLU 67 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc12 B OE2 GLU 66 R GLU 67 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc13 H CA CA . R CA 1001 1_555 N O HOH . R HOH 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc14 I CA CA . R CA 1002 1_555 N O HOH . R HOH 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc15 I CA CA . R CA 1002 1_555 N O HOH . R HOH 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WC5 _atom_sites.fract_transf_matrix[1][1] 0.012988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000854 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 B 1 501 1 SO4 SO4 . D 3 SO4 B 1 502 2 SO4 SO4 . E 3 SO4 B 1 503 3 SO4 SO4 . F 3 SO4 B 1 504 4 SO4 SO4 . G 4 GOL B 1 505 1 GOL GOL . H 5 CA R 1 1001 1001 CA CA . I 5 CA R 1 1002 1002 CA CA . J 3 SO4 R 1 1003 5 SO4 SO4 . K 3 SO4 R 1 1004 6 SO4 SO4 . L 6 AJV R 1 1005 1 AJV XXX . M 7 HOH B 1 601 148 HOH HOH . M 7 HOH B 2 602 138 HOH HOH . M 7 HOH B 3 603 136 HOH HOH . M 7 HOH B 4 604 33 HOH HOH . M 7 HOH B 5 605 6 HOH HOH . M 7 HOH B 6 606 11 HOH HOH . M 7 HOH B 7 607 90 HOH HOH . M 7 HOH B 8 608 129 HOH HOH . M 7 HOH B 9 609 149 HOH HOH . M 7 HOH B 10 610 15 HOH HOH . M 7 HOH B 11 611 21 HOH HOH . M 7 HOH B 12 612 4 HOH HOH . M 7 HOH B 13 613 46 HOH HOH . M 7 HOH B 14 614 23 HOH HOH . M 7 HOH B 15 615 151 HOH HOH . M 7 HOH B 16 616 115 HOH HOH . M 7 HOH B 17 617 67 HOH HOH . M 7 HOH B 18 618 16 HOH HOH . M 7 HOH B 19 619 45 HOH HOH . M 7 HOH B 20 620 24 HOH HOH . M 7 HOH B 21 621 100 HOH HOH . M 7 HOH B 22 622 25 HOH HOH . M 7 HOH B 23 623 85 HOH HOH . M 7 HOH B 24 624 97 HOH HOH . M 7 HOH B 25 625 76 HOH HOH . M 7 HOH B 26 626 59 HOH HOH . M 7 HOH B 27 627 98 HOH HOH . M 7 HOH B 28 628 20 HOH HOH . M 7 HOH B 29 629 42 HOH HOH . M 7 HOH B 30 630 77 HOH HOH . M 7 HOH B 31 631 7 HOH HOH . M 7 HOH B 32 632 152 HOH HOH . M 7 HOH B 33 633 109 HOH HOH . M 7 HOH B 34 634 44 HOH HOH . M 7 HOH B 35 635 14 HOH HOH . M 7 HOH B 36 636 143 HOH HOH . M 7 HOH B 37 637 154 HOH HOH . M 7 HOH B 38 638 122 HOH HOH . M 7 HOH B 39 639 63 HOH HOH . M 7 HOH B 40 640 99 HOH HOH . M 7 HOH B 41 641 75 HOH HOH . M 7 HOH B 42 642 155 HOH HOH . M 7 HOH B 43 643 135 HOH HOH . M 7 HOH B 44 644 108 HOH HOH . M 7 HOH B 45 645 144 HOH HOH . M 7 HOH B 46 646 80 HOH HOH . M 7 HOH B 47 647 153 HOH HOH . M 7 HOH B 48 648 124 HOH HOH . M 7 HOH B 49 649 162 HOH HOH . M 7 HOH B 50 650 93 HOH HOH . M 7 HOH B 51 651 70 HOH HOH . M 7 HOH B 52 652 163 HOH HOH . M 7 HOH B 53 653 146 HOH HOH . M 7 HOH B 54 654 156 HOH HOH . M 7 HOH B 55 655 141 HOH HOH . M 7 HOH B 56 656 158 HOH HOH . M 7 HOH B 57 657 96 HOH HOH . M 7 HOH B 58 658 81 HOH HOH . M 7 HOH B 59 659 164 HOH HOH . M 7 HOH B 60 660 112 HOH HOH . M 7 HOH B 61 661 150 HOH HOH . M 7 HOH B 62 662 137 HOH HOH . N 7 HOH R 1 1101 165 HOH HOH . N 7 HOH R 2 1102 168 HOH HOH . N 7 HOH R 3 1103 169 HOH HOH . N 7 HOH R 4 1104 94 HOH HOH . N 7 HOH R 5 1105 128 HOH HOH . N 7 HOH R 6 1106 111 HOH HOH . N 7 HOH R 7 1107 32 HOH HOH . N 7 HOH R 8 1108 3 HOH HOH . N 7 HOH R 9 1109 8 HOH HOH . N 7 HOH R 10 1110 117 HOH HOH . N 7 HOH R 11 1111 27 HOH HOH . N 7 HOH R 12 1112 40 HOH HOH . N 7 HOH R 13 1113 142 HOH HOH . N 7 HOH R 14 1114 172 HOH HOH . N 7 HOH R 15 1115 140 HOH HOH . N 7 HOH R 16 1116 22 HOH HOH . N 7 HOH R 17 1117 29 HOH HOH . N 7 HOH R 18 1118 160 HOH HOH . N 7 HOH R 19 1119 5 HOH HOH . N 7 HOH R 20 1120 53 HOH HOH . N 7 HOH R 21 1121 125 HOH HOH . N 7 HOH R 22 1122 74 HOH HOH . N 7 HOH R 23 1123 173 HOH HOH . N 7 HOH R 24 1124 116 HOH HOH . N 7 HOH R 25 1125 51 HOH HOH . N 7 HOH R 26 1126 102 HOH HOH . N 7 HOH R 27 1127 174 HOH HOH . N 7 HOH R 28 1128 1 HOH HOH . N 7 HOH R 29 1129 35 HOH HOH . N 7 HOH R 30 1130 101 HOH HOH . N 7 HOH R 31 1131 52 HOH HOH . N 7 HOH R 32 1132 88 HOH HOH . N 7 HOH R 33 1133 49 HOH HOH . N 7 HOH R 34 1134 17 HOH HOH . N 7 HOH R 35 1135 78 HOH HOH . N 7 HOH R 36 1136 13 HOH HOH . N 7 HOH R 37 1137 73 HOH HOH . N 7 HOH R 38 1138 28 HOH HOH . N 7 HOH R 39 1139 82 HOH HOH . N 7 HOH R 40 1140 61 HOH HOH . N 7 HOH R 41 1141 68 HOH HOH . N 7 HOH R 42 1142 83 HOH HOH . N 7 HOH R 43 1143 87 HOH HOH . N 7 HOH R 44 1144 18 HOH HOH . N 7 HOH R 45 1145 89 HOH HOH . N 7 HOH R 46 1146 130 HOH HOH . N 7 HOH R 47 1147 38 HOH HOH . N 7 HOH R 48 1148 9 HOH HOH . N 7 HOH R 49 1149 2 HOH HOH . N 7 HOH R 50 1150 26 HOH HOH . N 7 HOH R 51 1151 159 HOH HOH . N 7 HOH R 52 1152 30 HOH HOH . N 7 HOH R 53 1153 50 HOH HOH . N 7 HOH R 54 1154 39 HOH HOH . N 7 HOH R 55 1155 54 HOH HOH . N 7 HOH R 56 1156 121 HOH HOH . N 7 HOH R 57 1157 34 HOH HOH . N 7 HOH R 58 1158 105 HOH HOH . N 7 HOH R 59 1159 48 HOH HOH . N 7 HOH R 60 1160 41 HOH HOH . N 7 HOH R 61 1161 106 HOH HOH . N 7 HOH R 62 1162 55 HOH HOH . N 7 HOH R 63 1163 170 HOH HOH . N 7 HOH R 64 1164 84 HOH HOH . N 7 HOH R 65 1165 103 HOH HOH . N 7 HOH R 66 1166 72 HOH HOH . N 7 HOH R 67 1167 167 HOH HOH . N 7 HOH R 68 1168 37 HOH HOH . N 7 HOH R 69 1169 56 HOH HOH . N 7 HOH R 70 1170 62 HOH HOH . N 7 HOH R 71 1171 79 HOH HOH . N 7 HOH R 72 1172 65 HOH HOH . N 7 HOH R 73 1173 19 HOH HOH . N 7 HOH R 74 1174 31 HOH HOH . N 7 HOH R 75 1175 120 HOH HOH . N 7 HOH R 76 1176 95 HOH HOH . N 7 HOH R 77 1177 139 HOH HOH . N 7 HOH R 78 1178 91 HOH HOH . N 7 HOH R 79 1179 60 HOH HOH . N 7 HOH R 80 1180 86 HOH HOH . N 7 HOH R 81 1181 43 HOH HOH . N 7 HOH R 82 1182 110 HOH HOH . N 7 HOH R 83 1183 10 HOH HOH . N 7 HOH R 84 1184 12 HOH HOH . N 7 HOH R 85 1185 66 HOH HOH . N 7 HOH R 86 1186 36 HOH HOH . N 7 HOH R 87 1187 175 HOH HOH . N 7 HOH R 88 1188 69 HOH HOH . N 7 HOH R 89 1189 47 HOH HOH . N 7 HOH R 90 1190 113 HOH HOH . N 7 HOH R 91 1191 104 HOH HOH . N 7 HOH R 92 1192 134 HOH HOH . N 7 HOH R 93 1193 107 HOH HOH . N 7 HOH R 94 1194 133 HOH HOH . N 7 HOH R 95 1195 64 HOH HOH . N 7 HOH R 96 1196 166 HOH HOH . N 7 HOH R 97 1197 114 HOH HOH . N 7 HOH R 98 1198 119 HOH HOH . N 7 HOH R 99 1199 126 HOH HOH . N 7 HOH R 100 1200 127 HOH HOH . N 7 HOH R 101 1201 132 HOH HOH . N 7 HOH R 102 1202 123 HOH HOH . N 7 HOH R 103 1203 57 HOH HOH . N 7 HOH R 104 1204 58 HOH HOH . N 7 HOH R 105 1205 131 HOH HOH . N 7 HOH R 106 1206 147 HOH HOH . N 7 HOH R 107 1207 92 HOH HOH . N 7 HOH R 108 1208 71 HOH HOH . N 7 HOH R 109 1209 145 HOH HOH . N 7 HOH R 110 1210 157 HOH HOH . N 7 HOH R 111 1211 118 HOH HOH . N 7 HOH R 112 1212 171 HOH HOH . N 7 HOH R 113 1213 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x -7.15 _atom_site.Cartn_y -11.368 _atom_site.Cartn_z 6.913 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id R _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #