data_5WC5
#
_model_server_result.job_id            su8yteYWV4aW3ZLAGFLN8g 
_model_server_result.datetime_utc      '2024-11-26 08:03:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wc5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":505}' 
#
_entry.id    5WC5 
#
_exptl.entry_id    5WC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.76 
_cell.angle_gamma         90 
_cell.entry_id            5WC5 
_cell.length_a            76.994 
_cell.length_b            66.015 
_cell.length_c            65.298 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -4.282066 0 65.157446 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 19 R ASP 20 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc2 B OD1 ASP 21 R ASP 22 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc3 B OD1 ASP 23 R ASP 24 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc4 B O THR 25 R THR 26 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc5 B OE1 GLU 30 R GLU 31 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc6 B OE2 GLU 30 R GLU 31 1_555 H CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc7 B OD1 ASP 55 R ASP 56 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc8 B OD1 ASP 57 R ASP 58 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc9 B OD1 ASN 59 R ASN 60 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc10 B O THR 61 R THR 62 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc11 B OE1 GLU 66 R GLU 67 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc12 B OE2 GLU 66 R GLU 67 1_555 I CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc13 H CA CA . R CA 1001 1_555 N O HOH . R HOH 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc14 I CA CA . R CA 1002 1_555 N O HOH . R HOH 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc15 I CA CA . R CA 1002 1_555 N O HOH . R HOH 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     5WC5 
_atom_sites.fract_transf_matrix[1][1]    0.012988 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000854 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015148 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 B 1 501 1 SO4 SO4 . 
D 3 SO4 B 1 502 2 SO4 SO4 . 
E 3 SO4 B 1 503 3 SO4 SO4 . 
F 3 SO4 B 1 504 4 SO4 SO4 . 
G 4 GOL B 1 505 1 GOL GOL . 
H 5 CA R 1 1001 1001 CA CA . 
I 5 CA R 1 1002 1002 CA CA . 
J 3 SO4 R 1 1003 5 SO4 SO4 . 
K 3 SO4 R 1 1004 6 SO4 SO4 . 
L 6 AJV R 1 1005 1 AJV XXX . 
M 7 HOH B 1 601 148 HOH HOH . 
M 7 HOH B 2 602 138 HOH HOH . 
M 7 HOH B 3 603 136 HOH HOH . 
M 7 HOH B 4 604 33 HOH HOH . 
M 7 HOH B 5 605 6 HOH HOH . 
M 7 HOH B 6 606 11 HOH HOH . 
M 7 HOH B 7 607 90 HOH HOH . 
M 7 HOH B 8 608 129 HOH HOH . 
M 7 HOH B 9 609 149 HOH HOH . 
M 7 HOH B 10 610 15 HOH HOH . 
M 7 HOH B 11 611 21 HOH HOH . 
M 7 HOH B 12 612 4 HOH HOH . 
M 7 HOH B 13 613 46 HOH HOH . 
M 7 HOH B 14 614 23 HOH HOH . 
M 7 HOH B 15 615 151 HOH HOH . 
M 7 HOH B 16 616 115 HOH HOH . 
M 7 HOH B 17 617 67 HOH HOH . 
M 7 HOH B 18 618 16 HOH HOH . 
M 7 HOH B 19 619 45 HOH HOH . 
M 7 HOH B 20 620 24 HOH HOH . 
M 7 HOH B 21 621 100 HOH HOH . 
M 7 HOH B 22 622 25 HOH HOH . 
M 7 HOH B 23 623 85 HOH HOH . 
M 7 HOH B 24 624 97 HOH HOH . 
M 7 HOH B 25 625 76 HOH HOH . 
M 7 HOH B 26 626 59 HOH HOH . 
M 7 HOH B 27 627 98 HOH HOH . 
M 7 HOH B 28 628 20 HOH HOH . 
M 7 HOH B 29 629 42 HOH HOH . 
M 7 HOH B 30 630 77 HOH HOH . 
M 7 HOH B 31 631 7 HOH HOH . 
M 7 HOH B 32 632 152 HOH HOH . 
M 7 HOH B 33 633 109 HOH HOH . 
M 7 HOH B 34 634 44 HOH HOH . 
M 7 HOH B 35 635 14 HOH HOH . 
M 7 HOH B 36 636 143 HOH HOH . 
M 7 HOH B 37 637 154 HOH HOH . 
M 7 HOH B 38 638 122 HOH HOH . 
M 7 HOH B 39 639 63 HOH HOH . 
M 7 HOH B 40 640 99 HOH HOH . 
M 7 HOH B 41 641 75 HOH HOH . 
M 7 HOH B 42 642 155 HOH HOH . 
M 7 HOH B 43 643 135 HOH HOH . 
M 7 HOH B 44 644 108 HOH HOH . 
M 7 HOH B 45 645 144 HOH HOH . 
M 7 HOH B 46 646 80 HOH HOH . 
M 7 HOH B 47 647 153 HOH HOH . 
M 7 HOH B 48 648 124 HOH HOH . 
M 7 HOH B 49 649 162 HOH HOH . 
M 7 HOH B 50 650 93 HOH HOH . 
M 7 HOH B 51 651 70 HOH HOH . 
M 7 HOH B 52 652 163 HOH HOH . 
M 7 HOH B 53 653 146 HOH HOH . 
M 7 HOH B 54 654 156 HOH HOH . 
M 7 HOH B 55 655 141 HOH HOH . 
M 7 HOH B 56 656 158 HOH HOH . 
M 7 HOH B 57 657 96 HOH HOH . 
M 7 HOH B 58 658 81 HOH HOH . 
M 7 HOH B 59 659 164 HOH HOH . 
M 7 HOH B 60 660 112 HOH HOH . 
M 7 HOH B 61 661 150 HOH HOH . 
M 7 HOH B 62 662 137 HOH HOH . 
N 7 HOH R 1 1101 165 HOH HOH . 
N 7 HOH R 2 1102 168 HOH HOH . 
N 7 HOH R 3 1103 169 HOH HOH . 
N 7 HOH R 4 1104 94 HOH HOH . 
N 7 HOH R 5 1105 128 HOH HOH . 
N 7 HOH R 6 1106 111 HOH HOH . 
N 7 HOH R 7 1107 32 HOH HOH . 
N 7 HOH R 8 1108 3 HOH HOH . 
N 7 HOH R 9 1109 8 HOH HOH . 
N 7 HOH R 10 1110 117 HOH HOH . 
N 7 HOH R 11 1111 27 HOH HOH . 
N 7 HOH R 12 1112 40 HOH HOH . 
N 7 HOH R 13 1113 142 HOH HOH . 
N 7 HOH R 14 1114 172 HOH HOH . 
N 7 HOH R 15 1115 140 HOH HOH . 
N 7 HOH R 16 1116 22 HOH HOH . 
N 7 HOH R 17 1117 29 HOH HOH . 
N 7 HOH R 18 1118 160 HOH HOH . 
N 7 HOH R 19 1119 5 HOH HOH . 
N 7 HOH R 20 1120 53 HOH HOH . 
N 7 HOH R 21 1121 125 HOH HOH . 
N 7 HOH R 22 1122 74 HOH HOH . 
N 7 HOH R 23 1123 173 HOH HOH . 
N 7 HOH R 24 1124 116 HOH HOH . 
N 7 HOH R 25 1125 51 HOH HOH . 
N 7 HOH R 26 1126 102 HOH HOH . 
N 7 HOH R 27 1127 174 HOH HOH . 
N 7 HOH R 28 1128 1 HOH HOH . 
N 7 HOH R 29 1129 35 HOH HOH . 
N 7 HOH R 30 1130 101 HOH HOH . 
N 7 HOH R 31 1131 52 HOH HOH . 
N 7 HOH R 32 1132 88 HOH HOH . 
N 7 HOH R 33 1133 49 HOH HOH . 
N 7 HOH R 34 1134 17 HOH HOH . 
N 7 HOH R 35 1135 78 HOH HOH . 
N 7 HOH R 36 1136 13 HOH HOH . 
N 7 HOH R 37 1137 73 HOH HOH . 
N 7 HOH R 38 1138 28 HOH HOH . 
N 7 HOH R 39 1139 82 HOH HOH . 
N 7 HOH R 40 1140 61 HOH HOH . 
N 7 HOH R 41 1141 68 HOH HOH . 
N 7 HOH R 42 1142 83 HOH HOH . 
N 7 HOH R 43 1143 87 HOH HOH . 
N 7 HOH R 44 1144 18 HOH HOH . 
N 7 HOH R 45 1145 89 HOH HOH . 
N 7 HOH R 46 1146 130 HOH HOH . 
N 7 HOH R 47 1147 38 HOH HOH . 
N 7 HOH R 48 1148 9 HOH HOH . 
N 7 HOH R 49 1149 2 HOH HOH . 
N 7 HOH R 50 1150 26 HOH HOH . 
N 7 HOH R 51 1151 159 HOH HOH . 
N 7 HOH R 52 1152 30 HOH HOH . 
N 7 HOH R 53 1153 50 HOH HOH . 
N 7 HOH R 54 1154 39 HOH HOH . 
N 7 HOH R 55 1155 54 HOH HOH . 
N 7 HOH R 56 1156 121 HOH HOH . 
N 7 HOH R 57 1157 34 HOH HOH . 
N 7 HOH R 58 1158 105 HOH HOH . 
N 7 HOH R 59 1159 48 HOH HOH . 
N 7 HOH R 60 1160 41 HOH HOH . 
N 7 HOH R 61 1161 106 HOH HOH . 
N 7 HOH R 62 1162 55 HOH HOH . 
N 7 HOH R 63 1163 170 HOH HOH . 
N 7 HOH R 64 1164 84 HOH HOH . 
N 7 HOH R 65 1165 103 HOH HOH . 
N 7 HOH R 66 1166 72 HOH HOH . 
N 7 HOH R 67 1167 167 HOH HOH . 
N 7 HOH R 68 1168 37 HOH HOH . 
N 7 HOH R 69 1169 56 HOH HOH . 
N 7 HOH R 70 1170 62 HOH HOH . 
N 7 HOH R 71 1171 79 HOH HOH . 
N 7 HOH R 72 1172 65 HOH HOH . 
N 7 HOH R 73 1173 19 HOH HOH . 
N 7 HOH R 74 1174 31 HOH HOH . 
N 7 HOH R 75 1175 120 HOH HOH . 
N 7 HOH R 76 1176 95 HOH HOH . 
N 7 HOH R 77 1177 139 HOH HOH . 
N 7 HOH R 78 1178 91 HOH HOH . 
N 7 HOH R 79 1179 60 HOH HOH . 
N 7 HOH R 80 1180 86 HOH HOH . 
N 7 HOH R 81 1181 43 HOH HOH . 
N 7 HOH R 82 1182 110 HOH HOH . 
N 7 HOH R 83 1183 10 HOH HOH . 
N 7 HOH R 84 1184 12 HOH HOH . 
N 7 HOH R 85 1185 66 HOH HOH . 
N 7 HOH R 86 1186 36 HOH HOH . 
N 7 HOH R 87 1187 175 HOH HOH . 
N 7 HOH R 88 1188 69 HOH HOH . 
N 7 HOH R 89 1189 47 HOH HOH . 
N 7 HOH R 90 1190 113 HOH HOH . 
N 7 HOH R 91 1191 104 HOH HOH . 
N 7 HOH R 92 1192 134 HOH HOH . 
N 7 HOH R 93 1193 107 HOH HOH . 
N 7 HOH R 94 1194 133 HOH HOH . 
N 7 HOH R 95 1195 64 HOH HOH . 
N 7 HOH R 96 1196 166 HOH HOH . 
N 7 HOH R 97 1197 114 HOH HOH . 
N 7 HOH R 98 1198 119 HOH HOH . 
N 7 HOH R 99 1199 126 HOH HOH . 
N 7 HOH R 100 1200 127 HOH HOH . 
N 7 HOH R 101 1201 132 HOH HOH . 
N 7 HOH R 102 1202 123 HOH HOH . 
N 7 HOH R 103 1203 57 HOH HOH . 
N 7 HOH R 104 1204 58 HOH HOH . 
N 7 HOH R 105 1205 131 HOH HOH . 
N 7 HOH R 106 1206 147 HOH HOH . 
N 7 HOH R 107 1207 92 HOH HOH . 
N 7 HOH R 108 1208 71 HOH HOH . 
N 7 HOH R 109 1209 145 HOH HOH . 
N 7 HOH R 110 1210 157 HOH HOH . 
N 7 HOH R 111 1211 118 HOH HOH . 
N 7 HOH R 112 1212 171 HOH HOH . 
N 7 HOH R 113 1213 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 -31.782 0.607 47.786 1 50.37 ? C1 GOL 505 B 1 
HETATM 2 O O1 GOL . . . G 4 -32.95 1.382 47.918 1 43.83 ? O1 GOL 505 B 1 
HETATM 3 C C2 GOL . . . G 4 -32.039 -0.833 48.222 1 57.91 ? C2 GOL 505 B 1 
HETATM 4 O O2 GOL . . . G 4 -33.365 -0.939 48.692 1 62.25 ? O2 GOL 505 B 1 
HETATM 5 C C3 GOL . . . G 4 -31.076 -1.197 49.355 1 59.3 ? C3 GOL 505 B 1 
HETATM 6 O O3 GOL . . . G 4 -30.688 -2.551 49.26 1 60.44 ? O3 GOL 505 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#