data_5WCF
#
_model_server_result.job_id            YBERTcGwlyGlQad7qliaRw 
_model_server_result.datetime_utc      '2025-06-21 09:34:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wcf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5WCF 
#
_exptl.entry_id    5WCF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WCF 
_cell.length_a            94.721 
_cell.length_b            94.721 
_cell.length_c            108.713 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WCF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             51 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              50 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             230 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              229 
_struct_conn.ptnr2_symmetry                 6_565 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.569 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 343 n n 
N HN1 SAH sing 344 n n 
N HN2 SAH sing 345 n n 
CA CB SAH sing 346 n n 
CA C SAH sing 347 n n 
CA HA SAH sing 348 n n 
CB CG SAH sing 349 n n 
CB HB1 SAH sing 350 n n 
CB HB2 SAH sing 351 n n 
CG SD SAH sing 352 n n 
CG HG1 SAH sing 353 n n 
CG HG2 SAH sing 354 n n 
SD C5' SAH sing 355 n n 
C O SAH doub 356 n n 
C OXT SAH sing 357 n n 
OXT HXT SAH sing 358 n n 
C5' C4' SAH sing 359 n n 
C5' "H5'1" SAH sing 360 n n 
C5' "H5'2" SAH sing 361 n n 
C4' O4' SAH sing 362 n n 
C4' C3' SAH sing 363 n n 
C4' H4' SAH sing 364 n n 
O4' C1' SAH sing 365 n n 
C3' O3' SAH sing 366 n n 
C3' C2' SAH sing 367 n n 
C3' H3' SAH sing 368 n n 
O3' HO3' SAH sing 369 n n 
C2' O2' SAH sing 370 n n 
C2' C1' SAH sing 371 n n 
C2' H2' SAH sing 372 n n 
O2' HO2' SAH sing 373 n n 
C1' N9 SAH sing 374 n n 
C1' H1' SAH sing 375 n n 
N9 C8 SAH sing 376 n y 
N9 C4 SAH sing 377 n y 
C8 N7 SAH doub 378 n y 
C8 H8 SAH sing 379 n n 
N7 C5 SAH sing 380 n y 
C5 C6 SAH sing 381 n y 
C5 C4 SAH doub 382 n y 
C6 N6 SAH sing 383 n n 
C6 N1 SAH doub 384 n y 
N6 HN61 SAH sing 385 n n 
N6 HN62 SAH sing 386 n n 
N1 C2 SAH sing 387 n y 
C2 N3 SAH doub 388 n y 
C2 H2 SAH sing 389 n n 
N3 C4 SAH sing 390 n y 
#
_atom_sites.entry_id                     5WCF 
_atom_sites.fract_transf_matrix[1][1]    0.010557 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010557 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009199 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 401 401 SAH SAH . 
C 3 A0S A 1 402 1 A0S XXX . 
D 4 144 A 1 403 1 144 144 . 
E 5 HOH A 1 501 54 HOH HOH . 
E 5 HOH A 2 502 98 HOH HOH . 
E 5 HOH A 3 503 27 HOH HOH . 
E 5 HOH A 4 504 25 HOH HOH . 
E 5 HOH A 5 505 46 HOH HOH . 
E 5 HOH A 6 506 51 HOH HOH . 
E 5 HOH A 7 507 43 HOH HOH . 
E 5 HOH A 8 508 45 HOH HOH . 
E 5 HOH A 9 509 92 HOH HOH . 
E 5 HOH A 10 510 57 HOH HOH . 
E 5 HOH A 11 511 22 HOH HOH . 
E 5 HOH A 12 512 47 HOH HOH . 
E 5 HOH A 13 513 48 HOH HOH . 
E 5 HOH A 14 514 29 HOH HOH . 
E 5 HOH A 15 515 71 HOH HOH . 
E 5 HOH A 16 516 50 HOH HOH . 
E 5 HOH A 17 517 7 HOH HOH . 
E 5 HOH A 18 518 18 HOH HOH . 
E 5 HOH A 19 519 63 HOH HOH . 
E 5 HOH A 20 520 83 HOH HOH . 
E 5 HOH A 21 521 15 HOH HOH . 
E 5 HOH A 22 522 8 HOH HOH . 
E 5 HOH A 23 523 14 HOH HOH . 
E 5 HOH A 24 524 53 HOH HOH . 
E 5 HOH A 25 525 96 HOH HOH . 
E 5 HOH A 26 526 30 HOH HOH . 
E 5 HOH A 27 527 56 HOH HOH . 
E 5 HOH A 28 528 82 HOH HOH . 
E 5 HOH A 29 529 36 HOH HOH . 
E 5 HOH A 30 530 55 HOH HOH . 
E 5 HOH A 31 531 2 HOH HOH . 
E 5 HOH A 32 532 67 HOH HOH . 
E 5 HOH A 33 533 91 HOH HOH . 
E 5 HOH A 34 534 95 HOH HOH . 
E 5 HOH A 35 535 24 HOH HOH . 
E 5 HOH A 36 536 11 HOH HOH . 
E 5 HOH A 37 537 1 HOH HOH . 
E 5 HOH A 38 538 21 HOH HOH . 
E 5 HOH A 39 539 28 HOH HOH . 
E 5 HOH A 40 540 81 HOH HOH . 
E 5 HOH A 41 541 35 HOH HOH . 
E 5 HOH A 42 542 72 HOH HOH . 
E 5 HOH A 43 543 31 HOH HOH . 
E 5 HOH A 44 544 26 HOH HOH . 
E 5 HOH A 45 545 75 HOH HOH . 
E 5 HOH A 46 546 38 HOH HOH . 
E 5 HOH A 47 547 65 HOH HOH . 
E 5 HOH A 48 548 102 HOH HOH . 
E 5 HOH A 49 549 79 HOH HOH . 
E 5 HOH A 50 550 37 HOH HOH . 
E 5 HOH A 51 551 89 HOH HOH . 
E 5 HOH A 52 552 6 HOH HOH . 
E 5 HOH A 53 553 34 HOH HOH . 
E 5 HOH A 54 554 101 HOH HOH . 
E 5 HOH A 55 555 80 HOH HOH . 
E 5 HOH A 56 556 61 HOH HOH . 
E 5 HOH A 57 557 16 HOH HOH . 
E 5 HOH A 58 558 10 HOH HOH . 
E 5 HOH A 59 559 3 HOH HOH . 
E 5 HOH A 60 560 20 HOH HOH . 
E 5 HOH A 61 561 62 HOH HOH . 
E 5 HOH A 62 562 84 HOH HOH . 
E 5 HOH A 63 563 40 HOH HOH . 
E 5 HOH A 64 564 49 HOH HOH . 
E 5 HOH A 65 565 97 HOH HOH . 
E 5 HOH A 66 566 5 HOH HOH . 
E 5 HOH A 67 567 78 HOH HOH . 
E 5 HOH A 68 568 66 HOH HOH . 
E 5 HOH A 69 569 9 HOH HOH . 
E 5 HOH A 70 570 68 HOH HOH . 
E 5 HOH A 71 571 13 HOH HOH . 
E 5 HOH A 72 572 33 HOH HOH . 
E 5 HOH A 73 573 41 HOH HOH . 
E 5 HOH A 74 574 39 HOH HOH . 
E 5 HOH A 75 575 17 HOH HOH . 
E 5 HOH A 76 576 19 HOH HOH . 
E 5 HOH A 77 577 32 HOH HOH . 
E 5 HOH A 78 578 59 HOH HOH . 
E 5 HOH A 79 579 77 HOH HOH . 
E 5 HOH A 80 580 12 HOH HOH . 
E 5 HOH A 81 581 99 HOH HOH . 
E 5 HOH A 82 582 74 HOH HOH . 
E 5 HOH A 83 583 70 HOH HOH . 
E 5 HOH A 84 584 88 HOH HOH . 
E 5 HOH A 85 585 90 HOH HOH . 
E 5 HOH A 86 586 42 HOH HOH . 
E 5 HOH A 87 587 60 HOH HOH . 
E 5 HOH A 88 588 86 HOH HOH . 
E 5 HOH A 89 589 44 HOH HOH . 
E 5 HOH A 90 590 64 HOH HOH . 
E 5 HOH A 91 591 76 HOH HOH . 
E 5 HOH A 92 592 93 HOH HOH . 
E 5 HOH A 93 593 69 HOH HOH . 
E 5 HOH A 94 594 4 HOH HOH . 
E 5 HOH A 95 595 58 HOH HOH . 
E 5 HOH A 96 596 85 HOH HOH . 
E 5 HOH A 97 597 23 HOH HOH . 
E 5 HOH A 98 598 100 HOH HOH . 
E 5 HOH A 99 599 94 HOH HOH . 
E 5 HOH A 100 600 73 HOH HOH . 
E 5 HOH A 101 601 52 HOH HOH . 
E 5 HOH A 102 602 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . B 2 20.322 58.887 4.946 1 57.03 ? N SAH 401 A 1 
HETATM 2 C CA SAH . . . B 2 18.924 59.167 5.265 1 58 ? CA SAH 401 A 1 
HETATM 3 C CB SAH . . . B 2 17.887 58.406 4.42 1 54.25 ? CB SAH 401 A 1 
HETATM 4 C CG SAH . . . B 2 18.125 56.919 4.234 1 56.17 ? CG SAH 401 A 1 
HETATM 5 S SD SAH . . . B 2 16.852 56.275 3.171 1 52.68 ? SD SAH 401 A 1 
HETATM 6 C C SAH . . . B 2 18.811 58.882 6.705 1 62.13 ? C SAH 401 A 1 
HETATM 7 O O SAH . . . B 2 19.662 58.162 7.227 1 67.21 ? O SAH 401 A 1 
HETATM 8 O OXT SAH . . . B 2 17.91 59.363 7.389 1 58.85 ? OXT SAH 401 A 1 
HETATM 9 C C5' SAH . . . B 2 17.77 55.952 1.676 1 51.26 ? C5' SAH 401 A 1 
HETATM 10 C C4' SAH . . . B 2 17.692 57.181 0.763 1 47.99 ? C4' SAH 401 A 1 
HETATM 11 O O4' SAH . . . B 2 18.559 57.059 -0.357 1 47.94 ? O4' SAH 401 A 1 
HETATM 12 C C3' SAH . . . B 2 16.295 57.427 0.201 1 49.03 ? C3' SAH 401 A 1 
HETATM 13 O O3' SAH . . . B 2 15.895 58.711 0.701 1 47.17 ? O3' SAH 401 A 1 
HETATM 14 C C2' SAH . . . B 2 16.445 57.314 -1.323 1 46.74 ? C2' SAH 401 A 1 
HETATM 15 O O2' SAH . . . B 2 15.705 58.287 -2.059 1 48.99 ? O2' SAH 401 A 1 
HETATM 16 C C1' SAH . . . B 2 17.931 57.545 -1.541 1 46.39 ? C1' SAH 401 A 1 
HETATM 17 N N9 SAH . . . B 2 18.561 56.889 -2.704 1 45.43 ? N9 SAH 401 A 1 
HETATM 18 C C8 SAH . . . B 2 18.32 55.656 -3.19 1 47.46 ? C8 SAH 401 A 1 
HETATM 19 N N7 SAH . . . B 2 19.132 55.394 -4.243 1 46.53 ? N7 SAH 401 A 1 
HETATM 20 C C5 SAH . . . B 2 19.914 56.467 -4.443 1 46.08 ? C5 SAH 401 A 1 
HETATM 21 C C6 SAH . . . B 2 20.981 56.856 -5.401 1 43.66 ? C6 SAH 401 A 1 
HETATM 22 N N6 SAH . . . B 2 21.37 56 -6.377 1 42.31 ? N6 SAH 401 A 1 
HETATM 23 N N1 SAH . . . B 2 21.543 58.085 -5.24 1 43.53 ? N1 SAH 401 A 1 
HETATM 24 C C2 SAH . . . B 2 21.144 58.95 -4.273 1 42.14 ? C2 SAH 401 A 1 
HETATM 25 N N3 SAH . . . B 2 20.166 58.655 -3.385 1 41.18 ? N3 SAH 401 A 1 
HETATM 26 C C4 SAH . . . B 2 19.536 57.458 -3.418 1 43.67 ? C4 SAH 401 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#