data_5WCI # _model_server_result.job_id ALfOmjTSfo_jnYQrS8OSpA _model_server_result.datetime_utc '2024-11-19 17:49:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5WCI # _exptl.entry_id 5WCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WCI _cell.length_a 46.336 _cell.length_b 58.729 _cell.length_c 120.277 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 119 A HIS 273 1_555 A N ALY 120 A ALY 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C ALY 120 A ALY 274 1_555 A N THR 121 A THR 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 56 A CYS 210 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A SG CYS 59 A CYS 213 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A NE2 HIS 72 A HIS 226 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 A SG CYS 76 A CYS 230 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 205 n n C1 C2 EDO sing 206 n n C1 H11 EDO sing 207 n n C1 H12 EDO sing 208 n n O1 HO1 EDO sing 209 n n C2 O2 EDO sing 210 n n C2 H21 EDO sing 211 n n C2 H22 EDO sing 212 n n O2 HO2 EDO sing 213 n n # _atom_sites.entry_id 5WCI _atom_sites.fract_transf_matrix[1][1] 0.021581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1000 ZN ZN . C 3 1VU A 1 502 2000 1VU 1VU . D 4 CL A 1 503 1 CL CL . E 5 EDO A 1 504 2 EDO EDO . F 5 EDO A 1 505 3 EDO EDO . G 5 EDO A 1 506 4 EDO EDO . H 5 EDO A 1 507 5 EDO EDO . I 6 HOH A 1 601 151 HOH HOH . I 6 HOH A 2 602 176 HOH HOH . I 6 HOH A 3 603 195 HOH HOH . I 6 HOH A 4 604 223 HOH HOH . I 6 HOH A 5 605 174 HOH HOH . I 6 HOH A 6 606 241 HOH HOH . I 6 HOH A 7 607 112 HOH HOH . I 6 HOH A 8 608 14 HOH HOH . I 6 HOH A 9 609 91 HOH HOH . I 6 HOH A 10 610 106 HOH HOH . I 6 HOH A 11 611 74 HOH HOH . I 6 HOH A 12 612 179 HOH HOH . I 6 HOH A 13 613 115 HOH HOH . I 6 HOH A 14 614 88 HOH HOH . I 6 HOH A 15 615 209 HOH HOH . I 6 HOH A 16 616 235 HOH HOH . I 6 HOH A 17 617 113 HOH HOH . I 6 HOH A 18 618 139 HOH HOH . I 6 HOH A 19 619 119 HOH HOH . I 6 HOH A 20 620 128 HOH HOH . I 6 HOH A 21 621 84 HOH HOH . I 6 HOH A 22 622 181 HOH HOH . I 6 HOH A 23 623 230 HOH HOH . I 6 HOH A 24 624 161 HOH HOH . I 6 HOH A 25 625 155 HOH HOH . I 6 HOH A 26 626 1 HOH HOH . I 6 HOH A 27 627 162 HOH HOH . I 6 HOH A 28 628 45 HOH HOH . I 6 HOH A 29 629 201 HOH HOH . I 6 HOH A 30 630 108 HOH HOH . I 6 HOH A 31 631 33 HOH HOH . I 6 HOH A 32 632 17 HOH HOH . I 6 HOH A 33 633 175 HOH HOH . I 6 HOH A 34 634 207 HOH HOH . I 6 HOH A 35 635 191 HOH HOH . I 6 HOH A 36 636 15 HOH HOH . I 6 HOH A 37 637 47 HOH HOH . I 6 HOH A 38 638 34 HOH HOH . I 6 HOH A 39 639 83 HOH HOH . I 6 HOH A 40 640 225 HOH HOH . I 6 HOH A 41 641 63 HOH HOH . I 6 HOH A 42 642 137 HOH HOH . I 6 HOH A 43 643 57 HOH HOH . I 6 HOH A 44 644 131 HOH HOH . I 6 HOH A 45 645 59 HOH HOH . I 6 HOH A 46 646 25 HOH HOH . I 6 HOH A 47 647 140 HOH HOH . I 6 HOH A 48 648 64 HOH HOH . I 6 HOH A 49 649 204 HOH HOH . I 6 HOH A 50 650 39 HOH HOH . I 6 HOH A 51 651 35 HOH HOH . I 6 HOH A 52 652 18 HOH HOH . I 6 HOH A 53 653 120 HOH HOH . I 6 HOH A 54 654 3 HOH HOH . I 6 HOH A 55 655 116 HOH HOH . I 6 HOH A 56 656 77 HOH HOH . I 6 HOH A 57 657 173 HOH HOH . I 6 HOH A 58 658 28 HOH HOH . I 6 HOH A 59 659 156 HOH HOH . I 6 HOH A 60 660 177 HOH HOH . I 6 HOH A 61 661 41 HOH HOH . I 6 HOH A 62 662 220 HOH HOH . I 6 HOH A 63 663 11 HOH HOH . I 6 HOH A 64 664 187 HOH HOH . I 6 HOH A 65 665 30 HOH HOH . I 6 HOH A 66 666 68 HOH HOH . I 6 HOH A 67 667 238 HOH HOH . I 6 HOH A 68 668 32 HOH HOH . I 6 HOH A 69 669 166 HOH HOH . I 6 HOH A 70 670 157 HOH HOH . I 6 HOH A 71 671 184 HOH HOH . I 6 HOH A 72 672 194 HOH HOH . I 6 HOH A 73 673 136 HOH HOH . I 6 HOH A 74 674 242 HOH HOH . I 6 HOH A 75 675 4 HOH HOH . I 6 HOH A 76 676 164 HOH HOH . I 6 HOH A 77 677 24 HOH HOH . I 6 HOH A 78 678 152 HOH HOH . I 6 HOH A 79 679 126 HOH HOH . I 6 HOH A 80 680 19 HOH HOH . I 6 HOH A 81 681 100 HOH HOH . I 6 HOH A 82 682 99 HOH HOH . I 6 HOH A 83 683 60 HOH HOH . I 6 HOH A 84 684 37 HOH HOH . I 6 HOH A 85 685 226 HOH HOH . I 6 HOH A 86 686 86 HOH HOH . I 6 HOH A 87 687 135 HOH HOH . I 6 HOH A 88 688 8 HOH HOH . I 6 HOH A 89 689 62 HOH HOH . I 6 HOH A 90 690 46 HOH HOH . I 6 HOH A 91 691 124 HOH HOH . I 6 HOH A 92 692 71 HOH HOH . I 6 HOH A 93 693 107 HOH HOH . I 6 HOH A 94 694 215 HOH HOH . I 6 HOH A 95 695 228 HOH HOH . I 6 HOH A 96 696 244 HOH HOH . I 6 HOH A 97 697 7 HOH HOH . I 6 HOH A 98 698 42 HOH HOH . I 6 HOH A 99 699 154 HOH HOH . I 6 HOH A 100 700 158 HOH HOH . I 6 HOH A 101 701 138 HOH HOH . I 6 HOH A 102 702 97 HOH HOH . I 6 HOH A 103 703 20 HOH HOH . I 6 HOH A 104 704 2 HOH HOH . I 6 HOH A 105 705 221 HOH HOH . I 6 HOH A 106 706 56 HOH HOH . I 6 HOH A 107 707 50 HOH HOH . I 6 HOH A 108 708 150 HOH HOH . I 6 HOH A 109 709 96 HOH HOH . I 6 HOH A 110 710 148 HOH HOH . I 6 HOH A 111 711 178 HOH HOH . I 6 HOH A 112 712 51 HOH HOH . I 6 HOH A 113 713 186 HOH HOH . I 6 HOH A 114 714 12 HOH HOH . I 6 HOH A 115 715 6 HOH HOH . I 6 HOH A 116 716 127 HOH HOH . I 6 HOH A 117 717 95 HOH HOH . I 6 HOH A 118 718 141 HOH HOH . I 6 HOH A 119 719 29 HOH HOH . I 6 HOH A 120 720 58 HOH HOH . I 6 HOH A 121 721 92 HOH HOH . I 6 HOH A 122 722 13 HOH HOH . I 6 HOH A 123 723 81 HOH HOH . I 6 HOH A 124 724 227 HOH HOH . I 6 HOH A 125 725 98 HOH HOH . I 6 HOH A 126 726 121 HOH HOH . I 6 HOH A 127 727 54 HOH HOH . I 6 HOH A 128 728 218 HOH HOH . I 6 HOH A 129 729 117 HOH HOH . I 6 HOH A 130 730 118 HOH HOH . I 6 HOH A 131 731 61 HOH HOH . I 6 HOH A 132 732 206 HOH HOH . I 6 HOH A 133 733 114 HOH HOH . I 6 HOH A 134 734 55 HOH HOH . I 6 HOH A 135 735 21 HOH HOH . I 6 HOH A 136 736 240 HOH HOH . I 6 HOH A 137 737 27 HOH HOH . I 6 HOH A 138 738 231 HOH HOH . I 6 HOH A 139 739 111 HOH HOH . I 6 HOH A 140 740 26 HOH HOH . I 6 HOH A 141 741 66 HOH HOH . I 6 HOH A 142 742 22 HOH HOH . I 6 HOH A 143 743 205 HOH HOH . I 6 HOH A 144 744 109 HOH HOH . I 6 HOH A 145 745 48 HOH HOH . I 6 HOH A 146 746 76 HOH HOH . I 6 HOH A 147 747 82 HOH HOH . I 6 HOH A 148 748 208 HOH HOH . I 6 HOH A 149 749 52 HOH HOH . I 6 HOH A 150 750 133 HOH HOH . I 6 HOH A 151 751 163 HOH HOH . I 6 HOH A 152 752 188 HOH HOH . I 6 HOH A 153 753 202 HOH HOH . I 6 HOH A 154 754 10 HOH HOH . I 6 HOH A 155 755 89 HOH HOH . I 6 HOH A 156 756 123 HOH HOH . I 6 HOH A 157 757 70 HOH HOH . I 6 HOH A 158 758 183 HOH HOH . I 6 HOH A 159 759 203 HOH HOH . I 6 HOH A 160 760 73 HOH HOH . I 6 HOH A 161 761 16 HOH HOH . I 6 HOH A 162 762 5 HOH HOH . I 6 HOH A 163 763 40 HOH HOH . I 6 HOH A 164 764 142 HOH HOH . I 6 HOH A 165 765 23 HOH HOH . I 6 HOH A 166 766 38 HOH HOH . I 6 HOH A 167 767 49 HOH HOH . I 6 HOH A 168 768 65 HOH HOH . I 6 HOH A 169 769 122 HOH HOH . I 6 HOH A 170 770 211 HOH HOH . I 6 HOH A 171 771 53 HOH HOH . I 6 HOH A 172 772 103 HOH HOH . I 6 HOH A 173 773 232 HOH HOH . I 6 HOH A 174 774 125 HOH HOH . I 6 HOH A 175 775 180 HOH HOH . I 6 HOH A 176 776 196 HOH HOH . I 6 HOH A 177 777 69 HOH HOH . I 6 HOH A 178 778 44 HOH HOH . I 6 HOH A 179 779 80 HOH HOH . I 6 HOH A 180 780 9 HOH HOH . I 6 HOH A 181 781 149 HOH HOH . I 6 HOH A 182 782 75 HOH HOH . I 6 HOH A 183 783 102 HOH HOH . I 6 HOH A 184 784 165 HOH HOH . I 6 HOH A 185 785 101 HOH HOH . I 6 HOH A 186 786 234 HOH HOH . I 6 HOH A 187 787 132 HOH HOH . I 6 HOH A 188 788 193 HOH HOH . I 6 HOH A 189 789 87 HOH HOH . I 6 HOH A 190 790 182 HOH HOH . I 6 HOH A 191 791 185 HOH HOH . I 6 HOH A 192 792 43 HOH HOH . I 6 HOH A 193 793 210 HOH HOH . I 6 HOH A 194 794 189 HOH HOH . I 6 HOH A 195 795 159 HOH HOH . I 6 HOH A 196 796 104 HOH HOH . I 6 HOH A 197 797 197 HOH HOH . I 6 HOH A 198 798 90 HOH HOH . I 6 HOH A 199 799 79 HOH HOH . I 6 HOH A 200 800 129 HOH HOH . I 6 HOH A 201 801 198 HOH HOH . I 6 HOH A 202 802 217 HOH HOH . I 6 HOH A 203 803 93 HOH HOH . I 6 HOH A 204 804 236 HOH HOH . I 6 HOH A 205 805 85 HOH HOH . I 6 HOH A 206 806 110 HOH HOH . I 6 HOH A 207 807 145 HOH HOH . I 6 HOH A 208 808 130 HOH HOH . I 6 HOH A 209 809 243 HOH HOH . I 6 HOH A 210 810 233 HOH HOH . I 6 HOH A 211 811 213 HOH HOH . I 6 HOH A 212 812 229 HOH HOH . I 6 HOH A 213 813 67 HOH HOH . I 6 HOH A 214 814 94 HOH HOH . I 6 HOH A 215 815 168 HOH HOH . I 6 HOH A 216 816 192 HOH HOH . I 6 HOH A 217 817 171 HOH HOH . I 6 HOH A 218 818 147 HOH HOH . I 6 HOH A 219 819 172 HOH HOH . I 6 HOH A 220 820 31 HOH HOH . I 6 HOH A 221 821 237 HOH HOH . I 6 HOH A 222 822 78 HOH HOH . I 6 HOH A 223 823 216 HOH HOH . I 6 HOH A 224 824 143 HOH HOH . I 6 HOH A 225 825 190 HOH HOH . I 6 HOH A 226 826 199 HOH HOH . I 6 HOH A 227 827 36 HOH HOH . I 6 HOH A 228 828 214 HOH HOH . I 6 HOH A 229 829 144 HOH HOH . I 6 HOH A 230 830 72 HOH HOH . I 6 HOH A 231 831 167 HOH HOH . I 6 HOH A 232 832 134 HOH HOH . I 6 HOH A 233 833 146 HOH HOH . I 6 HOH A 234 834 169 HOH HOH . I 6 HOH A 235 835 200 HOH HOH . I 6 HOH A 236 836 170 HOH HOH . I 6 HOH A 237 837 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -3.057 17.972 -9.773 1 31.26 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 5 -2.01 18.543 -8.959 1 26.77 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 5 -2.522 17.133 -10.918 1 33.12 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 5 -1.788 15.996 -10.472 1 36.29 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #