data_5WCT # _model_server_result.job_id YX0tLkhlKyiUzy256QYRKg _model_server_result.datetime_utc '2024-11-29 12:03:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wct # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5WCT # _exptl.entry_id 5WCT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.779 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{(2S)-1-[(4-chlorophenyl)acetyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WCT _cell.length_a 74.561 _cell.length_b 74.561 _cell.length_c 125.062 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WCT _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 A OE1 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc5 A OE1 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D O2 GY4 . A GY4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D O3 GY4 . A GY4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc9 C MN MN . A MN 302 1_555 D O1 GY4 . A GY4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc10 C MN MN . A MN 302 1_555 D O2 GY4 . A GY4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc11 C MN MN . A MN 302 1_555 E O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc12 C MN MN . A MN 302 1_555 E O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'C17 H16 Cl N3 O5' _chem_comp.formula_weight 377.779 _chem_comp.id GY4 _chem_comp.mon_nstd_flag . _chem_comp.name '2-{(2S)-1-[(4-chlorophenyl)acetyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SRI-29775 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 GY4 doub 129 n n C16 C17 GY4 sing 130 n n C16 C15 GY4 sing 131 n n C1 N3 GY4 sing 132 n n C1 C2 GY4 sing 133 n n C17 C6 GY4 sing 134 n n N3 C5 GY4 sing 135 n n C15 N2 GY4 sing 136 n n O2 C2 GY4 sing 137 n n C2 C3 GY4 doub 138 n n C5 C6 GY4 sing 139 n n C5 N1 GY4 doub 140 n n C6 N2 GY4 sing 141 n n N2 C7 GY4 sing 142 n n C3 N1 GY4 sing 143 n n C3 C4 GY4 sing 144 n n O3 C4 GY4 doub 145 n n C8 C7 GY4 sing 146 n n C8 C9 GY4 sing 147 n n C7 O5 GY4 doub 148 n n C4 O4 GY4 sing 149 n n C9 C10 GY4 doub 150 n y C9 C14 GY4 sing 151 n y C10 C11 GY4 sing 152 n y C14 C13 GY4 doub 153 n y C11 C12 GY4 doub 154 n y C13 C12 GY4 sing 155 n y C12 CL1 GY4 sing 156 n n C10 H1 GY4 sing 157 n n C11 H2 GY4 sing 158 n n C13 H3 GY4 sing 159 n n C14 H4 GY4 sing 160 n n C15 H5 GY4 sing 161 n n C15 H6 GY4 sing 162 n n C16 H7 GY4 sing 163 n n C16 H8 GY4 sing 164 n n C17 H9 GY4 sing 165 n n C17 H10 GY4 sing 166 n n C6 H11 GY4 sing 167 n n C8 H12 GY4 sing 168 n n C8 H13 GY4 sing 169 n n N3 H14 GY4 sing 170 n n O2 H15 GY4 sing 171 n n O4 H16 GY4 sing 172 n n # _atom_sites.entry_id 5WCT _atom_sites.fract_transf_matrix[1][1] 0.013412 _atom_sites.fract_transf_matrix[1][2] 0.007743 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 201 MN MN . C 2 MN A 1 302 202 MN MN . D 3 GY4 A 1 303 1 GY4 GY4 . E 4 HOH A 1 401 23 HOH HOH . E 4 HOH A 2 402 1 HOH HOH . E 4 HOH A 3 403 20 HOH HOH . E 4 HOH A 4 404 13 HOH HOH . E 4 HOH A 5 405 15 HOH HOH . E 4 HOH A 6 406 25 HOH HOH . E 4 HOH A 7 407 2 HOH HOH . E 4 HOH A 8 408 10 HOH HOH . E 4 HOH A 9 409 17 HOH HOH . E 4 HOH A 10 410 7 HOH HOH . E 4 HOH A 11 411 11 HOH HOH . E 4 HOH A 12 412 21 HOH HOH . E 4 HOH A 13 413 6 HOH HOH . E 4 HOH A 14 414 24 HOH HOH . E 4 HOH A 15 415 16 HOH HOH . E 4 HOH A 16 416 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GY4 . . . D 3 28.02 15.431 3.535 1 67.71 ? C1 GY4 303 A 1 HETATM 2 C C10 GY4 . . . D 3 34.252 15.269 7.77 1 80.76 ? C10 GY4 303 A 1 HETATM 3 C C11 GY4 . . . D 3 34.778 15.071 9.029 1 73.76 ? C11 GY4 303 A 1 HETATM 4 C C12 GY4 . . . D 3 34.463 13.912 9.695 1 77.62 ? C12 GY4 303 A 1 HETATM 5 C C13 GY4 . . . D 3 33.645 12.963 9.138 1 68.61 ? C13 GY4 303 A 1 HETATM 6 C C14 GY4 . . . D 3 33.136 13.178 7.886 1 73.39 ? C14 GY4 303 A 1 HETATM 7 C C15 GY4 . . . D 3 32.822 16.631 3.84 1 64.49 ? C15 GY4 303 A 1 HETATM 8 C C16 GY4 . . . D 3 32.081 17.453 2.811 1 73.66 ? C16 GY4 303 A 1 HETATM 9 C C17 GY4 . . . D 3 31.382 18.485 3.683 1 78.74 ? C17 GY4 303 A 1 HETATM 10 C C2 GY4 . . . D 3 26.971 16.014 4.245 1 72.53 ? C2 GY4 303 A 1 HETATM 11 C C3 GY4 . . . D 3 27.236 17.051 5.095 1 65.84 ? C3 GY4 303 A 1 HETATM 12 C C4 GY4 . . . D 3 26.157 17.699 5.925 1 77.53 ? C4 GY4 303 A 1 HETATM 13 C C5 GY4 . . . D 3 29.477 17.021 4.597 1 75.86 ? C5 GY4 303 A 1 HETATM 14 C C6 GY4 . . . D 3 30.836 17.634 4.844 1 71.5 ? C6 GY4 303 A 1 HETATM 15 C C7 GY4 . . . D 3 31.827 15.661 5.913 1 83.37 ? C7 GY4 303 A 1 HETATM 16 C C8 GY4 . . . D 3 32.85 14.551 5.82 1 90.33 ? C8 GY4 303 A 1 HETATM 17 C C9 GY4 . . . D 3 33.432 14.325 7.181 1 88.15 ? C9 GY4 303 A 1 HETATM 18 N N1 GY4 . . . D 3 28.462 17.551 5.27 1 75.39 ? N1 GY4 303 A 1 HETATM 19 N N2 GY4 . . . D 3 31.857 16.581 4.943 1 71.77 ? N2 GY4 303 A 1 HETATM 20 N N3 GY4 . . . D 3 29.278 15.966 3.737 1 62.3 ? N3 GY4 303 A 1 HETATM 21 O O1 GY4 . . . D 3 27.87 14.481 2.753 1 54.35 ? O1 GY4 303 A 1 HETATM 22 O O2 GY4 . . . D 3 25.753 15.479 4.04 1 51 ? O2 GY4 303 A 1 HETATM 23 O O3 GY4 . . . D 3 24.989 17.311 5.728 1 55.18 -1 O3 GY4 303 A 1 HETATM 24 O O4 GY4 . . . D 3 26.535 18.532 6.791 1 78.41 ? O4 GY4 303 A 1 HETATM 25 O O5 GY4 . . . D 3 30.996 15.713 6.804 1 81.28 ? O5 GY4 303 A 1 HETATM 26 CL CL1 GY4 . . . D 3 35.11 13.633 11.285 1 84.47 ? CL1 GY4 303 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 26 #