data_5WDO # _model_server_result.job_id DQdeuya7clXfZCDdW61QQw _model_server_result.datetime_utc '2024-11-02 12:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5WDO # _exptl.entry_id 5WDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WDO _cell.length_a 89.959 _cell.length_b 89.959 _cell.length_c 136.766 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 21 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A O PHE 32 A PHE 28 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A OD1 ASP 34 A ASP 30 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A OE1 GLU 35 A GLU 31 1_555 B CA CA . A CA 201 5_674 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A OD1 ASP 37 A ASP 33 1_555 B CA CA . A CA 201 5_674 ? A ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc6 A OD1 ASP 37 A ASP 33 1_555 B CA CA . A CA 201 5_674 ? B ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc7 A OD2 ASP 37 A ASP 33 1_555 B CA CA . A CA 201 5_674 ? A ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc8 A OD2 ASP 37 A ASP 33 1_555 B CA CA . A CA 201 5_674 ? B ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc9 A OG1 THR 39 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc10 A OE1 GLN 103 A GLN 99 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc11 B CA CA . A CA 201 1_555 G O HOH . A HOH 363 5_674 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc12 B CA CA . A CA 201 1_555 G O HOH . A HOH 381 5_674 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc13 C MG MG . A MG 202 1_555 F O3G GNP . A GNP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc14 C MG MG . A MG 202 1_555 F O2B GNP . A GNP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc15 C MG MG . A MG 202 1_555 G O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc16 C MG MG . A MG 202 1_555 G O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc17 D MG MG . A MG 203 1_555 G O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc18 D MG MG . A MG 203 1_555 G O HOH . A HOH 314 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc19 D MG MG . A MG 203 1_555 G O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc20 D MG MG . A MG 203 1_555 G O HOH . A HOH 347 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WDO _atom_sites.fract_transf_matrix[1][1] 0.011116 _atom_sites.fract_transf_matrix[1][2] 0.006418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 167 CA CA . C 3 MG A 1 202 168 MG MG . D 3 MG A 1 203 170 MG MG . E 4 NA A 1 204 171 NA NA . F 5 GNP A 1 205 172 GNP GNP . G 6 HOH A 1 301 85 HOH HOH . G 6 HOH A 2 302 105 HOH HOH . G 6 HOH A 3 303 62 HOH HOH . G 6 HOH A 4 304 38 HOH HOH . G 6 HOH A 5 305 115 HOH HOH . G 6 HOH A 6 306 92 HOH HOH . G 6 HOH A 7 307 130 HOH HOH . G 6 HOH A 8 308 86 HOH HOH . G 6 HOH A 9 309 78 HOH HOH . G 6 HOH A 10 310 31 HOH HOH . G 6 HOH A 11 311 122 HOH HOH . G 6 HOH A 12 312 74 HOH HOH . G 6 HOH A 13 313 103 HOH HOH . G 6 HOH A 14 314 9 HOH HOH . G 6 HOH A 15 315 59 HOH HOH . G 6 HOH A 16 316 123 HOH HOH . G 6 HOH A 17 317 14 HOH HOH . G 6 HOH A 18 318 43 HOH HOH . G 6 HOH A 19 319 70 HOH HOH . G 6 HOH A 20 320 40 HOH HOH . G 6 HOH A 21 321 99 HOH HOH . G 6 HOH A 22 322 1 HOH HOH . G 6 HOH A 23 323 2 HOH HOH . G 6 HOH A 24 324 61 HOH HOH . G 6 HOH A 25 325 24 HOH HOH . G 6 HOH A 26 326 21 HOH HOH . G 6 HOH A 27 327 98 HOH HOH . G 6 HOH A 28 328 58 HOH HOH . G 6 HOH A 29 329 25 HOH HOH . G 6 HOH A 30 330 101 HOH HOH . G 6 HOH A 31 331 15 HOH HOH . G 6 HOH A 32 332 65 HOH HOH . G 6 HOH A 33 333 56 HOH HOH . G 6 HOH A 34 334 35 HOH HOH . G 6 HOH A 35 335 60 HOH HOH . G 6 HOH A 36 336 114 HOH HOH . G 6 HOH A 37 337 20 HOH HOH . G 6 HOH A 38 338 33 HOH HOH . G 6 HOH A 39 339 10 HOH HOH . G 6 HOH A 40 340 44 HOH HOH . G 6 HOH A 41 341 13 HOH HOH . G 6 HOH A 42 342 4 HOH HOH . G 6 HOH A 43 343 106 HOH HOH . G 6 HOH A 44 344 117 HOH HOH . G 6 HOH A 45 345 83 HOH HOH . G 6 HOH A 46 346 91 HOH HOH . G 6 HOH A 47 347 5 HOH HOH . G 6 HOH A 48 348 27 HOH HOH . G 6 HOH A 49 349 41 HOH HOH . G 6 HOH A 50 350 17 HOH HOH . G 6 HOH A 51 351 126 HOH HOH . G 6 HOH A 52 352 79 HOH HOH . G 6 HOH A 53 353 22 HOH HOH . G 6 HOH A 54 354 76 HOH HOH . G 6 HOH A 55 355 57 HOH HOH . G 6 HOH A 56 356 51 HOH HOH . G 6 HOH A 57 357 46 HOH HOH . G 6 HOH A 58 358 93 HOH HOH . G 6 HOH A 59 359 11 HOH HOH . G 6 HOH A 60 360 64 HOH HOH . G 6 HOH A 61 361 53 HOH HOH . G 6 HOH A 62 362 29 HOH HOH . G 6 HOH A 63 363 34 HOH HOH . G 6 HOH A 64 364 47 HOH HOH . G 6 HOH A 65 365 30 HOH HOH . G 6 HOH A 66 366 81 HOH HOH . G 6 HOH A 67 367 88 HOH HOH . G 6 HOH A 68 368 8 HOH HOH . G 6 HOH A 69 369 89 HOH HOH . G 6 HOH A 70 370 125 HOH HOH . G 6 HOH A 71 371 7 HOH HOH . G 6 HOH A 72 372 3 HOH HOH . G 6 HOH A 73 373 26 HOH HOH . G 6 HOH A 74 374 72 HOH HOH . G 6 HOH A 75 375 49 HOH HOH . G 6 HOH A 76 376 127 HOH HOH . G 6 HOH A 77 377 97 HOH HOH . G 6 HOH A 78 378 52 HOH HOH . G 6 HOH A 79 379 94 HOH HOH . G 6 HOH A 80 380 12 HOH HOH . G 6 HOH A 81 381 16 HOH HOH . G 6 HOH A 82 382 37 HOH HOH . G 6 HOH A 83 383 28 HOH HOH . G 6 HOH A 84 384 67 HOH HOH . G 6 HOH A 85 385 75 HOH HOH . G 6 HOH A 86 386 108 HOH HOH . G 6 HOH A 87 387 100 HOH HOH . G 6 HOH A 88 388 116 HOH HOH . G 6 HOH A 89 389 121 HOH HOH . G 6 HOH A 90 390 32 HOH HOH . G 6 HOH A 91 391 71 HOH HOH . G 6 HOH A 92 392 39 HOH HOH . G 6 HOH A 93 393 128 HOH HOH . G 6 HOH A 94 394 19 HOH HOH . G 6 HOH A 95 395 18 HOH HOH . G 6 HOH A 96 396 45 HOH HOH . G 6 HOH A 97 397 6 HOH HOH . G 6 HOH A 98 398 113 HOH HOH . G 6 HOH A 99 399 63 HOH HOH . G 6 HOH A 100 400 77 HOH HOH . G 6 HOH A 101 401 42 HOH HOH . G 6 HOH A 102 402 50 HOH HOH . G 6 HOH A 103 403 66 HOH HOH . G 6 HOH A 104 404 118 HOH HOH . G 6 HOH A 105 405 68 HOH HOH . G 6 HOH A 106 406 110 HOH HOH . G 6 HOH A 107 407 73 HOH HOH . G 6 HOH A 108 408 80 HOH HOH . G 6 HOH A 109 409 120 HOH HOH . G 6 HOH A 110 410 23 HOH HOH . G 6 HOH A 111 411 87 HOH HOH . G 6 HOH A 112 412 69 HOH HOH . G 6 HOH A 113 413 109 HOH HOH . G 6 HOH A 114 414 107 HOH HOH . G 6 HOH A 115 415 129 HOH HOH . G 6 HOH A 116 416 82 HOH HOH . G 6 HOH A 117 417 112 HOH HOH . G 6 HOH A 118 418 95 HOH HOH . G 6 HOH A 119 419 55 HOH HOH . G 6 HOH A 120 420 54 HOH HOH . G 6 HOH A 121 421 102 HOH HOH . G 6 HOH A 122 422 104 HOH HOH . G 6 HOH A 123 423 111 HOH HOH . G 6 HOH A 124 424 36 HOH HOH . G 6 HOH A 125 425 84 HOH HOH . G 6 HOH A 126 426 119 HOH HOH . G 6 HOH A 127 427 90 HOH HOH . G 6 HOH A 128 428 48 HOH HOH . G 6 HOH A 129 429 124 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -17.664 _atom_site.Cartn_y 53.736 _atom_site.Cartn_z -70.209 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.48 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 608 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #