data_5WDP # _model_server_result.job_id '_OiDnb-fwxXuSMXis7sZ0A' _model_server_result.datetime_utc '2024-11-02 12:22:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5WDP # _exptl.entry_id 5WDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WDP _cell.length_a 89.988 _cell.length_b 89.988 _cell.length_c 135.969 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D CA CA . A CA 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 A OG SER 17 A SER 17 1_555 E MG MG . A MG 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A O PHE 28 A PHE 28 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A OD1 ASP 30 A ASP 30 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 B CA CA . A CA 201 5_674 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc6 A OD1 ASP 33 A ASP 33 1_555 B CA CA . A CA 201 5_674 ? A ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc7 A OD1 ASP 33 A ASP 33 1_555 B CA CA . A CA 201 5_674 ? B ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc8 A OD2 ASP 33 A ASP 33 1_555 B CA CA . A CA 201 5_674 ? A ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc9 A OD2 ASP 33 A ASP 33 1_555 B CA CA . A CA 201 5_674 ? B ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc10 A OG1 THR 35 A THR 35 1_555 D CA CA . A CA 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.119 ? metalc ? metalc11 A OG1 THR 35 A THR 35 1_555 E MG MG . A MG 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.12 ? metalc ? metalc12 B CA CA . A CA 201 1_555 G O HOH . A HOH 349 5_674 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc13 B CA CA . A CA 201 1_555 G O HOH . A HOH 385 5_674 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc14 C O3G GNP . A GNP 202 1_555 D CA CA . A CA 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.004 ? metalc ? metalc15 C O2B GNP . A GNP 202 1_555 D CA CA . A CA 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.022 ? metalc ? metalc16 C O3G GNP . A GNP 202 1_555 E MG MG . A MG 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.004 ? metalc ? metalc17 C O2B GNP . A GNP 202 1_555 E MG MG . A MG 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.022 ? metalc ? metalc18 D CA CA . A CA 203 1_555 G O HOH . A HOH 318 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc19 D CA CA . A CA 203 1_555 G O HOH . A HOH 326 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc20 E MG MG . A MG 204 1_555 G O HOH . A HOH 318 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc21 E MG MG . A MG 204 1_555 G O HOH . A HOH 326 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc22 F MG MG . A MG 205 1_555 G O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc23 F MG MG . A MG 205 1_555 G O HOH . A HOH 325 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc24 F MG MG . A MG 205 1_555 G O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc25 F MG MG . A MG 205 1_555 G O HOH . A HOH 344 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WDP _atom_sites.fract_transf_matrix[1][1] 0.011113 _atom_sites.fract_transf_matrix[1][2] 0.006416 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 167 CA CA . C 3 GNP A 1 202 168 GNP GNP . D 2 CA A 1 203 169 CA CA . E 4 MG A 1 204 169 MG MG . F 4 MG A 1 205 170 MG MG . G 5 HOH A 1 301 90 HOH HOH . G 5 HOH A 2 302 98 HOH HOH . G 5 HOH A 3 303 105 HOH HOH . G 5 HOH A 4 304 96 HOH HOH . G 5 HOH A 5 305 108 HOH HOH . G 5 HOH A 6 306 94 HOH HOH . G 5 HOH A 7 307 72 HOH HOH . G 5 HOH A 8 308 52 HOH HOH . G 5 HOH A 9 309 50 HOH HOH . G 5 HOH A 10 310 58 HOH HOH . G 5 HOH A 11 311 97 HOH HOH . G 5 HOH A 12 312 11 HOH HOH . G 5 HOH A 13 313 88 HOH HOH . G 5 HOH A 14 314 91 HOH HOH . G 5 HOH A 15 315 9 HOH HOH . G 5 HOH A 16 316 76 HOH HOH . G 5 HOH A 17 317 10 HOH HOH . G 5 HOH A 18 318 1 HOH HOH . G 5 HOH A 19 319 33 HOH HOH . G 5 HOH A 20 320 66 HOH HOH . G 5 HOH A 21 321 48 HOH HOH . G 5 HOH A 22 322 71 HOH HOH . G 5 HOH A 23 323 95 HOH HOH . G 5 HOH A 24 324 54 HOH HOH . G 5 HOH A 25 325 31 HOH HOH . G 5 HOH A 26 326 25 HOH HOH . G 5 HOH A 27 327 15 HOH HOH . G 5 HOH A 28 328 6 HOH HOH . G 5 HOH A 29 329 20 HOH HOH . G 5 HOH A 30 330 81 HOH HOH . G 5 HOH A 31 331 7 HOH HOH . G 5 HOH A 32 332 26 HOH HOH . G 5 HOH A 33 333 63 HOH HOH . G 5 HOH A 34 334 38 HOH HOH . G 5 HOH A 35 335 5 HOH HOH . G 5 HOH A 36 336 53 HOH HOH . G 5 HOH A 37 337 40 HOH HOH . G 5 HOH A 38 338 8 HOH HOH . G 5 HOH A 39 339 45 HOH HOH . G 5 HOH A 40 340 82 HOH HOH . G 5 HOH A 41 341 70 HOH HOH . G 5 HOH A 42 342 30 HOH HOH . G 5 HOH A 43 343 85 HOH HOH . G 5 HOH A 44 344 3 HOH HOH . G 5 HOH A 45 345 57 HOH HOH . G 5 HOH A 46 346 100 HOH HOH . G 5 HOH A 47 347 67 HOH HOH . G 5 HOH A 48 348 14 HOH HOH . G 5 HOH A 49 349 44 HOH HOH . G 5 HOH A 50 350 92 HOH HOH . G 5 HOH A 51 351 2 HOH HOH . G 5 HOH A 52 352 77 HOH HOH . G 5 HOH A 53 353 32 HOH HOH . G 5 HOH A 54 354 23 HOH HOH . G 5 HOH A 55 355 80 HOH HOH . G 5 HOH A 56 356 4 HOH HOH . G 5 HOH A 57 357 19 HOH HOH . G 5 HOH A 58 358 34 HOH HOH . G 5 HOH A 59 359 65 HOH HOH . G 5 HOH A 60 360 22 HOH HOH . G 5 HOH A 61 361 27 HOH HOH . G 5 HOH A 62 362 18 HOH HOH . G 5 HOH A 63 363 42 HOH HOH . G 5 HOH A 64 364 62 HOH HOH . G 5 HOH A 65 365 41 HOH HOH . G 5 HOH A 66 366 16 HOH HOH . G 5 HOH A 67 367 110 HOH HOH . G 5 HOH A 68 368 116 HOH HOH . G 5 HOH A 69 369 89 HOH HOH . G 5 HOH A 70 370 13 HOH HOH . G 5 HOH A 71 371 21 HOH HOH . G 5 HOH A 72 372 103 HOH HOH . G 5 HOH A 73 373 101 HOH HOH . G 5 HOH A 74 374 12 HOH HOH . G 5 HOH A 75 375 17 HOH HOH . G 5 HOH A 76 376 79 HOH HOH . G 5 HOH A 77 377 107 HOH HOH . G 5 HOH A 78 378 51 HOH HOH . G 5 HOH A 79 379 36 HOH HOH . G 5 HOH A 80 380 84 HOH HOH . G 5 HOH A 81 381 109 HOH HOH . G 5 HOH A 82 382 43 HOH HOH . G 5 HOH A 83 383 35 HOH HOH . G 5 HOH A 84 384 49 HOH HOH . G 5 HOH A 85 385 28 HOH HOH . G 5 HOH A 86 386 59 HOH HOH . G 5 HOH A 87 387 56 HOH HOH . G 5 HOH A 88 388 74 HOH HOH . G 5 HOH A 89 389 55 HOH HOH . G 5 HOH A 90 390 93 HOH HOH . G 5 HOH A 91 391 86 HOH HOH . G 5 HOH A 92 392 78 HOH HOH . G 5 HOH A 93 393 47 HOH HOH . G 5 HOH A 94 394 61 HOH HOH . G 5 HOH A 95 395 114 HOH HOH . G 5 HOH A 96 396 113 HOH HOH . G 5 HOH A 97 397 29 HOH HOH . G 5 HOH A 98 398 60 HOH HOH . G 5 HOH A 99 399 106 HOH HOH . G 5 HOH A 100 400 39 HOH HOH . G 5 HOH A 101 401 87 HOH HOH . G 5 HOH A 102 402 68 HOH HOH . G 5 HOH A 103 403 73 HOH HOH . G 5 HOH A 104 404 69 HOH HOH . G 5 HOH A 105 405 112 HOH HOH . G 5 HOH A 106 406 102 HOH HOH . G 5 HOH A 107 407 37 HOH HOH . G 5 HOH A 108 408 83 HOH HOH . G 5 HOH A 109 409 46 HOH HOH . G 5 HOH A 110 410 111 HOH HOH . G 5 HOH A 111 411 75 HOH HOH . G 5 HOH A 112 412 115 HOH HOH . G 5 HOH A 113 413 24 HOH HOH . G 5 HOH A 114 414 64 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -4.797 _atom_site.Cartn_y 80.292 _atom_site.Cartn_z -73.046 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.97 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #