data_5WDS # _model_server_result.job_id 8wqtHpgsTv7KlFmKKtWXmA _model_server_result.datetime_utc '2024-11-02 12:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 5WDS # _exptl.entry_id 5WDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WDS _cell.length_a 67.222 _cell.length_b 67.222 _cell.length_c 184.679 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 21 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 C O3B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 D MG MG . A MG 202 1_555 I O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc4 D MG MG . A MG 202 1_555 I O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 D MG MG . A MG 202 1_555 I O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 D MG MG . A MG 202 1_555 I O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc7 B OG SER 21 B SER 17 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc8 F O1B GDP . B GDP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 G MG MG . B MG 202 1_555 J O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc10 G MG MG . B MG 202 1_555 J O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc11 G MG MG . B MG 202 1_555 J O HOH . B HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc12 G MG MG . B MG 202 1_555 J O HOH . B HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 5WDS _atom_sites.fract_transf_matrix[1][1] 0.014876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 2 GDP GDP . D 3 MG A 1 202 2 MG MG . E 4 GOL A 1 203 1 GOL GOL . F 2 GDP B 1 201 1 GDP GDP . G 3 MG B 1 202 1 MG MG . H 4 GOL B 1 203 2 GOL GOL . I 5 HOH A 1 301 55 HOH HOH . I 5 HOH A 2 302 153 HOH HOH . I 5 HOH A 3 303 132 HOH HOH . I 5 HOH A 4 304 90 HOH HOH . I 5 HOH A 5 305 143 HOH HOH . I 5 HOH A 6 306 115 HOH HOH . I 5 HOH A 7 307 123 HOH HOH . I 5 HOH A 8 308 65 HOH HOH . I 5 HOH A 9 309 19 HOH HOH . I 5 HOH A 10 310 125 HOH HOH . I 5 HOH A 11 311 119 HOH HOH . I 5 HOH A 12 312 24 HOH HOH . I 5 HOH A 13 313 177 HOH HOH . I 5 HOH A 14 314 114 HOH HOH . I 5 HOH A 15 315 102 HOH HOH . I 5 HOH A 16 316 91 HOH HOH . I 5 HOH A 17 317 94 HOH HOH . I 5 HOH A 18 318 71 HOH HOH . I 5 HOH A 19 319 172 HOH HOH . I 5 HOH A 20 320 29 HOH HOH . I 5 HOH A 21 321 106 HOH HOH . I 5 HOH A 22 322 142 HOH HOH . I 5 HOH A 23 323 113 HOH HOH . I 5 HOH A 24 324 47 HOH HOH . I 5 HOH A 25 325 43 HOH HOH . I 5 HOH A 26 326 14 HOH HOH . I 5 HOH A 27 327 33 HOH HOH . I 5 HOH A 28 328 9 HOH HOH . I 5 HOH A 29 329 61 HOH HOH . I 5 HOH A 30 330 18 HOH HOH . I 5 HOH A 31 331 168 HOH HOH . I 5 HOH A 32 332 92 HOH HOH . I 5 HOH A 33 333 10 HOH HOH . I 5 HOH A 34 334 96 HOH HOH . I 5 HOH A 35 335 86 HOH HOH . I 5 HOH A 36 336 73 HOH HOH . I 5 HOH A 37 337 51 HOH HOH . I 5 HOH A 38 338 124 HOH HOH . I 5 HOH A 39 339 39 HOH HOH . I 5 HOH A 40 340 2 HOH HOH . I 5 HOH A 41 341 116 HOH HOH . I 5 HOH A 42 342 57 HOH HOH . I 5 HOH A 43 343 104 HOH HOH . I 5 HOH A 44 344 155 HOH HOH . I 5 HOH A 45 345 74 HOH HOH . I 5 HOH A 46 346 69 HOH HOH . I 5 HOH A 47 347 152 HOH HOH . I 5 HOH A 48 348 44 HOH HOH . I 5 HOH A 49 349 95 HOH HOH . I 5 HOH A 50 350 110 HOH HOH . I 5 HOH A 51 351 66 HOH HOH . I 5 HOH A 52 352 42 HOH HOH . I 5 HOH A 53 353 31 HOH HOH . I 5 HOH A 54 354 45 HOH HOH . I 5 HOH A 55 355 166 HOH HOH . I 5 HOH A 56 356 62 HOH HOH . I 5 HOH A 57 357 154 HOH HOH . I 5 HOH A 58 358 77 HOH HOH . I 5 HOH A 59 359 93 HOH HOH . I 5 HOH A 60 360 105 HOH HOH . I 5 HOH A 61 361 52 HOH HOH . I 5 HOH A 62 362 6 HOH HOH . I 5 HOH A 63 363 35 HOH HOH . I 5 HOH A 64 364 15 HOH HOH . I 5 HOH A 65 365 121 HOH HOH . I 5 HOH A 66 366 161 HOH HOH . I 5 HOH A 67 367 23 HOH HOH . I 5 HOH A 68 368 36 HOH HOH . I 5 HOH A 69 369 175 HOH HOH . I 5 HOH A 70 370 174 HOH HOH . I 5 HOH A 71 371 97 HOH HOH . I 5 HOH A 72 372 72 HOH HOH . I 5 HOH A 73 373 75 HOH HOH . I 5 HOH A 74 374 178 HOH HOH . I 5 HOH A 75 375 149 HOH HOH . I 5 HOH A 76 376 150 HOH HOH . I 5 HOH A 77 377 82 HOH HOH . I 5 HOH A 78 378 11 HOH HOH . I 5 HOH A 79 379 176 HOH HOH . I 5 HOH A 80 380 111 HOH HOH . I 5 HOH A 81 381 167 HOH HOH . I 5 HOH A 82 382 50 HOH HOH . I 5 HOH A 83 383 85 HOH HOH . I 5 HOH A 84 384 145 HOH HOH . I 5 HOH A 85 385 78 HOH HOH . I 5 HOH A 86 386 165 HOH HOH . J 5 HOH B 1 301 133 HOH HOH . J 5 HOH B 2 302 170 HOH HOH . J 5 HOH B 3 303 179 HOH HOH . J 5 HOH B 4 304 129 HOH HOH . J 5 HOH B 5 305 48 HOH HOH . J 5 HOH B 6 306 5 HOH HOH . J 5 HOH B 7 307 60 HOH HOH . J 5 HOH B 8 308 4 HOH HOH . J 5 HOH B 9 309 89 HOH HOH . J 5 HOH B 10 310 151 HOH HOH . J 5 HOH B 11 311 98 HOH HOH . J 5 HOH B 12 312 76 HOH HOH . J 5 HOH B 13 313 70 HOH HOH . J 5 HOH B 14 314 8 HOH HOH . J 5 HOH B 15 315 131 HOH HOH . J 5 HOH B 16 316 120 HOH HOH . J 5 HOH B 17 317 169 HOH HOH . J 5 HOH B 18 318 53 HOH HOH . J 5 HOH B 19 319 107 HOH HOH . J 5 HOH B 20 320 49 HOH HOH . J 5 HOH B 21 321 103 HOH HOH . J 5 HOH B 22 322 135 HOH HOH . J 5 HOH B 23 323 156 HOH HOH . J 5 HOH B 24 324 28 HOH HOH . J 5 HOH B 25 325 38 HOH HOH . J 5 HOH B 26 326 138 HOH HOH . J 5 HOH B 27 327 1 HOH HOH . J 5 HOH B 28 328 27 HOH HOH . J 5 HOH B 29 329 146 HOH HOH . J 5 HOH B 30 330 67 HOH HOH . J 5 HOH B 31 331 83 HOH HOH . J 5 HOH B 32 332 173 HOH HOH . J 5 HOH B 33 333 136 HOH HOH . J 5 HOH B 34 334 46 HOH HOH . J 5 HOH B 35 335 22 HOH HOH . J 5 HOH B 36 336 164 HOH HOH . J 5 HOH B 37 337 87 HOH HOH . J 5 HOH B 38 338 88 HOH HOH . J 5 HOH B 39 339 100 HOH HOH . J 5 HOH B 40 340 101 HOH HOH . J 5 HOH B 41 341 158 HOH HOH . J 5 HOH B 42 342 109 HOH HOH . J 5 HOH B 43 343 163 HOH HOH . J 5 HOH B 44 344 34 HOH HOH . J 5 HOH B 45 345 41 HOH HOH . J 5 HOH B 46 346 37 HOH HOH . J 5 HOH B 47 347 12 HOH HOH . J 5 HOH B 48 348 159 HOH HOH . J 5 HOH B 49 349 99 HOH HOH . J 5 HOH B 50 350 54 HOH HOH . J 5 HOH B 51 351 30 HOH HOH . J 5 HOH B 52 352 21 HOH HOH . J 5 HOH B 53 353 81 HOH HOH . J 5 HOH B 54 354 59 HOH HOH . J 5 HOH B 55 355 7 HOH HOH . J 5 HOH B 56 356 16 HOH HOH . J 5 HOH B 57 357 3 HOH HOH . J 5 HOH B 58 358 26 HOH HOH . J 5 HOH B 59 359 84 HOH HOH . J 5 HOH B 60 360 162 HOH HOH . J 5 HOH B 61 361 171 HOH HOH . J 5 HOH B 62 362 13 HOH HOH . J 5 HOH B 63 363 68 HOH HOH . J 5 HOH B 64 364 144 HOH HOH . J 5 HOH B 65 365 20 HOH HOH . J 5 HOH B 66 366 32 HOH HOH . J 5 HOH B 67 367 58 HOH HOH . J 5 HOH B 68 368 130 HOH HOH . J 5 HOH B 69 369 157 HOH HOH . J 5 HOH B 70 370 80 HOH HOH . J 5 HOH B 71 371 148 HOH HOH . J 5 HOH B 72 372 140 HOH HOH . J 5 HOH B 73 373 137 HOH HOH . J 5 HOH B 74 374 63 HOH HOH . J 5 HOH B 75 375 79 HOH HOH . J 5 HOH B 76 376 40 HOH HOH . J 5 HOH B 77 377 112 HOH HOH . J 5 HOH B 78 378 25 HOH HOH . J 5 HOH B 79 379 126 HOH HOH . J 5 HOH B 80 380 118 HOH HOH . J 5 HOH B 81 381 134 HOH HOH . J 5 HOH B 82 382 141 HOH HOH . J 5 HOH B 83 383 139 HOH HOH . J 5 HOH B 84 384 108 HOH HOH . J 5 HOH B 85 385 56 HOH HOH . J 5 HOH B 86 386 117 HOH HOH . J 5 HOH B 87 387 181 HOH HOH . J 5 HOH B 88 388 64 HOH HOH . J 5 HOH B 89 389 122 HOH HOH . J 5 HOH B 90 390 180 HOH HOH . J 5 HOH B 91 391 160 HOH HOH . J 5 HOH B 92 392 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 30.409 5.71 57.316 1 59.92 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . H 4 29.937 6.312 58.509 1 49.71 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . H 4 30.736 4.232 57.552 1 54.67 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . H 4 30.083 3.743 58.715 1 52.06 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . H 4 30.302 3.427 56.332 1 54.93 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . H 4 30.326 2.05 56.636 1 54.37 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #