data_5WE9 # _model_server_result.job_id RBJbiWNGxSIvzd4cMLukAQ _model_server_result.datetime_utc '2024-11-26 00:48:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5we9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5WE9 # _exptl.entry_id 5WE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WE9 _cell.length_a 74.081 _cell.length_b 74.081 _cell.length_c 127.694 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -111.1215 64.156028 42.564667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc2 A OE1 GLU 61 A GLU 80 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 A OE2 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D O4 GY7 . A GY7 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.062 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D O4 GY7 . A GY7 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.155 ? metalc ? metalc9 B MN MN . A MN 301 1_555 D O3 GY7 . A GY7 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.267 ? metalc ? metalc10 B MN MN . A MN 301 1_555 D O3 GY7 . A GY7 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.209 ? metalc ? metalc11 C MG MG . A MG 302 1_555 D O3 GY7 . A GY7 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.982 ? metalc ? metalc12 C MG MG . A MG 302 1_555 D O3 GY7 . A GY7 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.089 ? metalc ? metalc13 C MG MG . A MG 302 1_555 D O2 GY7 . A GY7 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.027 ? metalc ? metalc14 C MG MG . A MG 302 1_555 D O2 GY7 . A GY7 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.967 ? metalc ? metalc15 C MG MG . A MG 302 1_555 F O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc16 C MG MG . A MG 302 1_555 F O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5WE9 _atom_sites.fract_transf_matrix[1][1] 0.013499 _atom_sites.fract_transf_matrix[1][2] 0.007793 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 1 MN MN . C 3 MG A 1 302 1 MG MG . D 4 GY7 A 1 303 1 GY7 GY7 . E 5 EDO A 1 304 1 EDO EDO . F 6 HOH A 1 401 108 HOH HOH . F 6 HOH A 2 402 77 HOH HOH . F 6 HOH A 3 403 128 HOH HOH . F 6 HOH A 4 404 21 HOH HOH . F 6 HOH A 5 405 94 HOH HOH . F 6 HOH A 6 406 22 HOH HOH . F 6 HOH A 7 407 3 HOH HOH . F 6 HOH A 8 408 90 HOH HOH . F 6 HOH A 9 409 18 HOH HOH . F 6 HOH A 10 410 105 HOH HOH . F 6 HOH A 11 411 2 HOH HOH . F 6 HOH A 12 412 133 HOH HOH . F 6 HOH A 13 413 115 HOH HOH . F 6 HOH A 14 414 103 HOH HOH . F 6 HOH A 15 415 10 HOH HOH . F 6 HOH A 16 416 7 HOH HOH . F 6 HOH A 17 417 46 HOH HOH . F 6 HOH A 18 418 95 HOH HOH . F 6 HOH A 19 419 51 HOH HOH . F 6 HOH A 20 420 121 HOH HOH . F 6 HOH A 21 421 120 HOH HOH . F 6 HOH A 22 422 71 HOH HOH . F 6 HOH A 23 423 48 HOH HOH . F 6 HOH A 24 424 58 HOH HOH . F 6 HOH A 25 425 8 HOH HOH . F 6 HOH A 26 426 29 HOH HOH . F 6 HOH A 27 427 49 HOH HOH . F 6 HOH A 28 428 4 HOH HOH . F 6 HOH A 29 429 24 HOH HOH . F 6 HOH A 30 430 47 HOH HOH . F 6 HOH A 31 431 31 HOH HOH . F 6 HOH A 32 432 41 HOH HOH . F 6 HOH A 33 433 32 HOH HOH . F 6 HOH A 34 434 52 HOH HOH . F 6 HOH A 35 435 66 HOH HOH . F 6 HOH A 36 436 102 HOH HOH . F 6 HOH A 37 437 139 HOH HOH . F 6 HOH A 38 438 96 HOH HOH . F 6 HOH A 39 439 50 HOH HOH . F 6 HOH A 40 440 61 HOH HOH . F 6 HOH A 41 441 6 HOH HOH . F 6 HOH A 42 442 9 HOH HOH . F 6 HOH A 43 443 53 HOH HOH . F 6 HOH A 44 444 37 HOH HOH . F 6 HOH A 45 445 28 HOH HOH . F 6 HOH A 46 446 35 HOH HOH . F 6 HOH A 47 447 134 HOH HOH . F 6 HOH A 48 448 19 HOH HOH . F 6 HOH A 49 449 99 HOH HOH . F 6 HOH A 50 450 114 HOH HOH . F 6 HOH A 51 451 43 HOH HOH . F 6 HOH A 52 452 56 HOH HOH . F 6 HOH A 53 453 104 HOH HOH . F 6 HOH A 54 454 40 HOH HOH . F 6 HOH A 55 455 72 HOH HOH . F 6 HOH A 56 456 55 HOH HOH . F 6 HOH A 57 457 27 HOH HOH . F 6 HOH A 58 458 5 HOH HOH . F 6 HOH A 59 459 137 HOH HOH . F 6 HOH A 60 460 13 HOH HOH . F 6 HOH A 61 461 26 HOH HOH . F 6 HOH A 62 462 15 HOH HOH . F 6 HOH A 63 463 12 HOH HOH . F 6 HOH A 64 464 67 HOH HOH . F 6 HOH A 65 465 16 HOH HOH . F 6 HOH A 66 466 34 HOH HOH . F 6 HOH A 67 467 14 HOH HOH . F 6 HOH A 68 468 25 HOH HOH . F 6 HOH A 69 469 132 HOH HOH . F 6 HOH A 70 470 65 HOH HOH . F 6 HOH A 71 471 57 HOH HOH . F 6 HOH A 72 472 38 HOH HOH . F 6 HOH A 73 473 97 HOH HOH . F 6 HOH A 74 474 62 HOH HOH . F 6 HOH A 75 475 68 HOH HOH . F 6 HOH A 76 476 42 HOH HOH . F 6 HOH A 77 477 1 HOH HOH . F 6 HOH A 78 478 129 HOH HOH . F 6 HOH A 79 479 59 HOH HOH . F 6 HOH A 80 480 136 HOH HOH . F 6 HOH A 81 481 101 HOH HOH . F 6 HOH A 82 482 109 HOH HOH . F 6 HOH A 83 483 106 HOH HOH . F 6 HOH A 84 484 20 HOH HOH . F 6 HOH A 85 485 80 HOH HOH . F 6 HOH A 86 486 117 HOH HOH . F 6 HOH A 87 487 111 HOH HOH . F 6 HOH A 88 488 116 HOH HOH . F 6 HOH A 89 489 11 HOH HOH . F 6 HOH A 90 490 75 HOH HOH . F 6 HOH A 91 491 84 HOH HOH . F 6 HOH A 92 492 135 HOH HOH . F 6 HOH A 93 493 70 HOH HOH . F 6 HOH A 94 494 100 HOH HOH . F 6 HOH A 95 495 45 HOH HOH . F 6 HOH A 96 496 93 HOH HOH . F 6 HOH A 97 497 54 HOH HOH . F 6 HOH A 98 498 107 HOH HOH . F 6 HOH A 99 499 123 HOH HOH . F 6 HOH A 100 500 92 HOH HOH . F 6 HOH A 101 501 87 HOH HOH . F 6 HOH A 102 502 112 HOH HOH . F 6 HOH A 103 503 89 HOH HOH . F 6 HOH A 104 504 64 HOH HOH . F 6 HOH A 105 505 88 HOH HOH . F 6 HOH A 106 506 74 HOH HOH . F 6 HOH A 107 507 44 HOH HOH . F 6 HOH A 108 508 82 HOH HOH . F 6 HOH A 109 509 131 HOH HOH . F 6 HOH A 110 510 138 HOH HOH . F 6 HOH A 111 511 85 HOH HOH . F 6 HOH A 112 512 33 HOH HOH . F 6 HOH A 113 513 39 HOH HOH . F 6 HOH A 114 514 83 HOH HOH . F 6 HOH A 115 515 17 HOH HOH . F 6 HOH A 116 516 86 HOH HOH . F 6 HOH A 117 517 23 HOH HOH . F 6 HOH A 118 518 63 HOH HOH . F 6 HOH A 119 519 69 HOH HOH . F 6 HOH A 120 520 113 HOH HOH . F 6 HOH A 121 521 60 HOH HOH . F 6 HOH A 122 522 36 HOH HOH . F 6 HOH A 123 523 130 HOH HOH . F 6 HOH A 124 524 81 HOH HOH . F 6 HOH A 125 525 127 HOH HOH . F 6 HOH A 126 526 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 -8.941 75.598 23.586 0.71 24.39 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 5 -8.594 76.411 22.472 0.71 32.73 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 5 -8.392 76.242 24.847 0.71 21.75 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 5 -8.772 75.427 25.946 0.71 30.69 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #