data_5WEF # _model_server_result.job_id Q5ksDCaUYJhTWsRUKFN2xw _model_server_result.datetime_utc '2024-11-25 03:07:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5WEF # _exptl.entry_id 5WEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WEF _cell.length_a 73.878 _cell.length_b 73.878 _cell.length_c 127.282 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A OE1 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 A OE1 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D O08 GY6 . A GY6 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D O05 GY6 . A GY6 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc9 C MN MN . A MN 302 1_555 D O05 GY6 . A GY6 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc10 C MN MN . A MN 302 1_555 D O12 GY6 . A GY6 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc11 C MN MN . A MN 302 1_555 I O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc12 C MN MN . A MN 302 1_555 I O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5WEF _atom_sites.fract_transf_matrix[1][1] 0.013536 _atom_sites.fract_transf_matrix[1][2] 0.007815 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 1 MN MN . C 2 MN A 1 302 2 MN MN . D 3 GY6 A 1 303 1 GY6 GY6 . E 4 EDO A 1 304 1 EDO EDO . F 4 EDO A 1 305 2 EDO EDO . G 4 EDO A 1 306 3 EDO EDO . H 5 NA A 1 307 1 NA NA . I 6 HOH A 1 401 62 HOH HOH . I 6 HOH A 2 402 10 HOH HOH . I 6 HOH A 3 403 63 HOH HOH . I 6 HOH A 4 404 17 HOH HOH . I 6 HOH A 5 405 59 HOH HOH . I 6 HOH A 6 406 52 HOH HOH . I 6 HOH A 7 407 6 HOH HOH . I 6 HOH A 8 408 61 HOH HOH . I 6 HOH A 9 409 46 HOH HOH . I 6 HOH A 10 410 7 HOH HOH . I 6 HOH A 11 411 65 HOH HOH . I 6 HOH A 12 412 2 HOH HOH . I 6 HOH A 13 413 54 HOH HOH . I 6 HOH A 14 414 24 HOH HOH . I 6 HOH A 15 415 20 HOH HOH . I 6 HOH A 16 416 69 HOH HOH . I 6 HOH A 17 417 71 HOH HOH . I 6 HOH A 18 418 3 HOH HOH . I 6 HOH A 19 419 15 HOH HOH . I 6 HOH A 20 420 21 HOH HOH . I 6 HOH A 21 421 18 HOH HOH . I 6 HOH A 22 422 44 HOH HOH . I 6 HOH A 23 423 5 HOH HOH . I 6 HOH A 24 424 4 HOH HOH . I 6 HOH A 25 425 51 HOH HOH . I 6 HOH A 26 426 29 HOH HOH . I 6 HOH A 27 427 50 HOH HOH . I 6 HOH A 28 428 39 HOH HOH . I 6 HOH A 29 429 14 HOH HOH . I 6 HOH A 30 430 68 HOH HOH . I 6 HOH A 31 431 73 HOH HOH . I 6 HOH A 32 432 70 HOH HOH . I 6 HOH A 33 433 64 HOH HOH . I 6 HOH A 34 434 1 HOH HOH . I 6 HOH A 35 435 28 HOH HOH . I 6 HOH A 36 436 72 HOH HOH . I 6 HOH A 37 437 45 HOH HOH . I 6 HOH A 38 438 9 HOH HOH . I 6 HOH A 39 439 8 HOH HOH . I 6 HOH A 40 440 16 HOH HOH . I 6 HOH A 41 441 19 HOH HOH . I 6 HOH A 42 442 11 HOH HOH . I 6 HOH A 43 443 35 HOH HOH . I 6 HOH A 44 444 58 HOH HOH . I 6 HOH A 45 445 40 HOH HOH . I 6 HOH A 46 446 13 HOH HOH . I 6 HOH A 47 447 26 HOH HOH . I 6 HOH A 48 448 25 HOH HOH . I 6 HOH A 49 449 42 HOH HOH . I 6 HOH A 50 450 57 HOH HOH . I 6 HOH A 51 451 55 HOH HOH . I 6 HOH A 52 452 47 HOH HOH . I 6 HOH A 53 453 66 HOH HOH . I 6 HOH A 54 454 12 HOH HOH . I 6 HOH A 55 455 27 HOH HOH . I 6 HOH A 56 456 67 HOH HOH . I 6 HOH A 57 457 53 HOH HOH . I 6 HOH A 58 458 22 HOH HOH . I 6 HOH A 59 459 23 HOH HOH . I 6 HOH A 60 460 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -26.927 81.193 2.719 1 79.91 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 4 -27.391 80.534 3.895 1 81.37 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 4 -27.234 82.677 2.853 1 81.16 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 4 -26.842 83.291 1.623 1 83.05 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #