data_5WEH # _model_server_result.job_id vEtsT0MHuQP3IUvcLJ0yLw _model_server_result.datetime_utc '2024-11-27 03:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5weh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":303}' # _entry.id 5WEH # _exptl.entry_id 5WEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 748.065 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WEH _cell.length_a 339.221 _cell.length_b 339.221 _cell.length_c 89.199 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I,J,K,L,M,N,O,Y,Z,AA,BA,CA,DA,KA 1 1 B,F,G,H,P,Q,R,S,T,U,V,W,X,EA,FA,GA,HA,IA,JA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 N N N ? 9 O N N ? 9 V N N ? 9 W N N ? 9 AA N N ? 9 BA N N ? 9 DA N N ? 9 GA N N ? 9 HA N N ? 9 IA N N ? 9 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 64 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 64 G CYS 64 1_555 B SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A O GLU 54 A GLU 54 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A O ALA 57 A ALA 57 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc3 A O GLY 59 A GLY 59 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 A OE1 GLN 61 A GLN 61 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 I FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc6 A ND1 HIS 284 A HIS 284 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc7 A NE2 HIS 333 A HIS 333 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc8 A NE2 HIS 334 A HIS 334 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc9 A OD2 ASP 412 A ASP 412 1_555 L MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc10 A NE2 HIS 419 A HIS 419 1_555 J FE HEA . A HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc11 A NE2 HIS 421 A HIS 421 1_555 I FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc12 L MG MG . A MG 604 1_555 C OE1 GLU 229 B GLU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc13 B O GLU 54 G GLU 54 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc14 B O ALA 57 G ALA 57 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc15 B O GLY 59 G GLY 59 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc16 B NE2 HIS 102 G HIS 102 1_555 Q FE HEA . G HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc17 B ND1 HIS 284 G HIS 284 1_555 S CU CU1 . G CU1 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc18 B NE2 HIS 333 G HIS 333 1_555 S CU CU1 . G CU1 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc19 B OD2 ASP 412 G ASP 412 1_555 T MG MG . G MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc20 B NE2 HIS 419 G HIS 419 1_555 R FE HEA . G HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc21 B NE2 HIS 421 G HIS 421 1_555 Q FE HEA . G HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc22 T MG MG . G MG 605 1_555 F OE1 GLU 229 H GLU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc23 C ND1 HIS 192 B HIS 217 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc24 C O GLU 229 B GLU 254 1_555 Y CU CU1 . B CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc25 C SG CYS 231 B CYS 256 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc26 C ND1 HIS 235 B HIS 260 1_555 Y CU CU1 . B CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc27 C SD MET 238 B MET 263 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc28 Y CU CU1 . B CU1 301 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc29 F ND1 HIS 192 H HIS 217 1_555 EA CU CU1 . H CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc30 EA CU CU1 . H CU1 301 1_555 FA CU CU1 . H CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 5WEH _atom_sites.fract_transf_matrix[1][1] 0.002948 _atom_sites.fract_transf_matrix[1][2] 0.001702 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 HEA A 1 601 567 HEA HEA . J 5 HEA A 1 602 568 HEA HEA . K 6 CU1 A 1 603 603 CU1 CU1 . L 7 MG A 1 604 604 MG MG . M 8 CA A 1 605 605 CA CA . N 9 3PE A 1 606 606 3PE 3PE . O 9 3PE A 1 607 607 3PE 3PE . P 10 LMU G 1 601 608 LMU LMU . Q 5 HEA G 1 602 567 HEA HEA . R 5 HEA G 1 603 568 HEA HEA . S 6 CU1 G 1 604 603 CU1 CU1 . T 7 MG G 1 605 604 MG MG . U 8 CA G 1 606 605 CA CA . V 9 3PE G 1 607 606 3PE 3PE . W 9 3PE G 1 608 607 3PE 3PE . X 10 LMU G 1 609 608 LMU LMU . Y 6 CU1 B 1 301 301 CU1 CU1 . Z 6 CU1 B 1 302 302 CU1 CU1 . AA 9 3PE C 1 301 301 3PE 3PE . BA 9 3PE C 1 302 302 3PE 3PE . CA 10 LMU C 1 303 303 LMU LMU . DA 9 3PE D 1 101 101 3PE 3PE . EA 6 CU1 H 1 301 301 CU1 CU1 . FA 6 CU1 H 1 302 302 CU1 CU1 . GA 9 3PE I 1 301 301 3PE 3PE . HA 9 3PE I 1 302 302 3PE 3PE . IA 9 3PE I 1 303 303 3PE 3PE . JA 9 3PE J 1 101 304 3PE 3PE . KA 11 HOH A 1 701 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . IA 9 -15.691 132.371 -7.108 1 188.1 ? P 3PE 303 I 1 HETATM 2 N N 3PE . . . IA 9 -16.172 136.994 -6.297 1 129.12 ? N 3PE 303 I 1 HETATM 3 O O11 3PE . . . IA 9 -16.059 130.79 -6.783 1 167.32 ? O11 3PE 303 I 1 HETATM 4 O O12 3PE . . . IA 9 -15.96 132.667 -8.564 1 196.96 ? O12 3PE 303 I 1 HETATM 5 O O13 3PE . . . IA 9 -16.608 133.368 -6.164 1 171.4 ? O13 3PE 303 I 1 HETATM 6 O O14 3PE . . . IA 9 -14.233 132.626 -6.812 1 182.51 ? O14 3PE 303 I 1 HETATM 7 C C11 3PE . . . IA 9 -16.851 134.679 -6.597 1 147.33 ? C11 3PE 303 I 1 HETATM 8 C C12 3PE . . . IA 9 -15.841 135.624 -5.949 1 141.28 ? C12 3PE 303 I 1 HETATM 9 C C1 3PE . . . IA 9 -16.49 129.951 -7.823 1 175.2 ? C1 3PE 303 I 1 HETATM 10 C C2 3PE . . . IA 9 -17.057 128.64 -7.264 1 183 ? C2 3PE 303 I 1 HETATM 11 C C3 3PE . . . IA 9 -18.558 128.564 -7.558 1 183.77 ? C3 3PE 303 I 1 HETATM 12 O O31 3PE . . . IA 9 -19.258 128.035 -6.466 1 176.67 ? O31 3PE 303 I 1 HETATM 13 O O32 3PE . . . IA 9 -21.251 128.941 -6.969 1 170.69 ? O32 3PE 303 I 1 HETATM 14 C C31 3PE . . . IA 9 -20.648 127.974 -6.639 1 162.19 ? C31 3PE 303 I 1 HETATM 15 C C32 3PE . . . IA 9 -21.396 126.665 -6.39 1 141.18 ? C32 3PE 303 I 1 HETATM 16 C C33 3PE . . . IA 9 -21.463 125.852 -7.678 1 125.99 ? C33 3PE 303 I 1 HETATM 17 C C34 3PE . . . IA 9 -20.755 124.516 -7.467 1 128.24 ? C34 3PE 303 I 1 HETATM 18 C C35 3PE . . . IA 9 -19.556 124.407 -8.407 1 101.63 ? C35 3PE 303 I 1 HETATM 19 O O21 3PE . . . IA 9 -16.427 127.549 -7.882 1 181.62 ? O21 3PE 303 I 1 HETATM 20 O O22 3PE . . . IA 9 -14.464 127.35 -6.817 1 155.25 ? O22 3PE 303 I 1 HETATM 21 C C21 3PE . . . IA 9 -15.502 126.85 -7.094 1 155.22 ? C21 3PE 303 I 1 HETATM 22 C C22 3PE . . . IA 9 -15.818 125.437 -6.599 1 121.83 ? C22 3PE 303 I 1 HETATM 23 C C23 3PE . . . IA 9 -14.567 124.562 -6.696 1 116.85 ? C23 3PE 303 I 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 446 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 23 #