data_5WEH
#
_model_server_result.job_id            BmkKRCMvMUbFPXCCE6bk_g 
_model_server_result.datetime_utc      '2024-11-27 04:26:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5weh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":605}' 
#
_entry.id    5WEH 
#
_exptl.entry_id    5WEH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5WEH 
_cell.length_a            339.221 
_cell.length_b            339.221 
_cell.length_c            89.199 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WEH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I,J,K,L,M,N,O,Y,Z,AA,BA,CA,DA,KA 1 1 
B,F,G,H,P,Q,R,S,T,U,V,W,X,EA,FA,GA,HA,IA,JA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 M N N 
? 8 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 64 A CYS 64 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 64 G CYS 64 1_555 B SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A O GLU 54 A GLU 54 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc2 A O ALA 57 A ALA 57 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc3 A O GLY 59 A GLY 59 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc4 A OE1 GLN 61 A GLN 61 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? 
metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 I FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc6 A ND1 HIS 284 A HIS 284 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc7 A NE2 HIS 333 A HIS 333 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc8 A NE2 HIS 334 A HIS 334 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc9 A OD2 ASP 412 A ASP 412 1_555 L MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc10 A NE2 HIS 419 A HIS 419 1_555 J FE HEA . A HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc11 A NE2 HIS 421 A HIS 421 1_555 I FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc12 L MG MG . A MG 604 1_555 C OE1 GLU 229 B GLU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc13 B O GLU 54 G GLU 54 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc14 B O ALA 57 G ALA 57 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc15 B O GLY 59 G GLY 59 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc16 B NE2 HIS 102 G HIS 102 1_555 Q FE HEA . G HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc17 B ND1 HIS 284 G HIS 284 1_555 S CU CU1 . G CU1 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc18 B NE2 HIS 333 G HIS 333 1_555 S CU CU1 . G CU1 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc19 B OD2 ASP 412 G ASP 412 1_555 T MG MG . G MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc20 B NE2 HIS 419 G HIS 419 1_555 R FE HEA . G HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc21 B NE2 HIS 421 G HIS 421 1_555 Q FE HEA . G HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc22 T MG MG . G MG 605 1_555 F OE1 GLU 229 H GLU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc23 C ND1 HIS 192 B HIS 217 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc24 C O GLU 229 B GLU 254 1_555 Y CU CU1 . B CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc25 C SG CYS 231 B CYS 256 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc26 C ND1 HIS 235 B HIS 260 1_555 Y CU CU1 . B CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc27 C SD MET 238 B MET 263 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc28 Y CU CU1 . B CU1 301 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc29 F ND1 HIS 192 H HIS 217 1_555 EA CU CU1 . H CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc30 EA CU CU1 . H CU1 301 1_555 FA CU CU1 . H CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5WEH 
_atom_sites.fract_transf_matrix[1][1]    0.002948 
_atom_sites.fract_transf_matrix[1][2]    0.001702 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003404 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 HEA A 1 601 567 HEA HEA . 
J 5 HEA A 1 602 568 HEA HEA . 
K 6 CU1 A 1 603 603 CU1 CU1 . 
L 7 MG A 1 604 604 MG MG . 
M 8 CA A 1 605 605 CA CA . 
N 9 3PE A 1 606 606 3PE 3PE . 
O 9 3PE A 1 607 607 3PE 3PE . 
P 10 LMU G 1 601 608 LMU LMU . 
Q 5 HEA G 1 602 567 HEA HEA . 
R 5 HEA G 1 603 568 HEA HEA . 
S 6 CU1 G 1 604 603 CU1 CU1 . 
T 7 MG G 1 605 604 MG MG . 
U 8 CA G 1 606 605 CA CA . 
V 9 3PE G 1 607 606 3PE 3PE . 
W 9 3PE G 1 608 607 3PE 3PE . 
X 10 LMU G 1 609 608 LMU LMU . 
Y 6 CU1 B 1 301 301 CU1 CU1 . 
Z 6 CU1 B 1 302 302 CU1 CU1 . 
AA 9 3PE C 1 301 301 3PE 3PE . 
BA 9 3PE C 1 302 302 3PE 3PE . 
CA 10 LMU C 1 303 303 LMU LMU . 
DA 9 3PE D 1 101 101 3PE 3PE . 
EA 6 CU1 H 1 301 301 CU1 CU1 . 
FA 6 CU1 H 1 302 302 CU1 CU1 . 
GA 9 3PE I 1 301 301 3PE 3PE . 
HA 9 3PE I 1 302 302 3PE 3PE . 
IA 9 3PE I 1 303 303 3PE 3PE . 
JA 9 3PE J 1 101 304 3PE 3PE . 
KA 11 HOH A 1 701 701 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       8 
_atom_site.Cartn_x               -47.382 
_atom_site.Cartn_y               146.819 
_atom_site.Cartn_z               16.757 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        102.54 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           605 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#