data_5WEH # _model_server_result.job_id gjBg4DjNNvQJU1r971cEEA _model_server_result.datetime_utc '2024-11-23 12:08:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5weh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":606}' # _entry.id 5WEH # _exptl.entry_id 5WEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WEH _cell.length_a 339.221 _cell.length_b 339.221 _cell.length_c 89.199 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I,J,K,L,M,N,O,Y,Z,AA,BA,CA,DA,KA 1 1 B,F,G,H,P,Q,R,S,T,U,V,W,X,EA,FA,GA,HA,IA,JA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 M N N ? 8 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 64 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 64 G CYS 64 1_555 B SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A O GLU 54 A GLU 54 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A O ALA 57 A ALA 57 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc3 A O GLY 59 A GLY 59 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 A OE1 GLN 61 A GLN 61 1_555 M CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 I FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc6 A ND1 HIS 284 A HIS 284 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc7 A NE2 HIS 333 A HIS 333 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc8 A NE2 HIS 334 A HIS 334 1_555 K CU CU1 . A CU1 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc9 A OD2 ASP 412 A ASP 412 1_555 L MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc10 A NE2 HIS 419 A HIS 419 1_555 J FE HEA . A HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc11 A NE2 HIS 421 A HIS 421 1_555 I FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc12 L MG MG . A MG 604 1_555 C OE1 GLU 229 B GLU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc13 B O GLU 54 G GLU 54 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc14 B O ALA 57 G ALA 57 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc15 B O GLY 59 G GLY 59 1_555 U CA CA . G CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc16 B NE2 HIS 102 G HIS 102 1_555 Q FE HEA . G HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc17 B ND1 HIS 284 G HIS 284 1_555 S CU CU1 . G CU1 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc18 B NE2 HIS 333 G HIS 333 1_555 S CU CU1 . G CU1 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc19 B OD2 ASP 412 G ASP 412 1_555 T MG MG . G MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc20 B NE2 HIS 419 G HIS 419 1_555 R FE HEA . G HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc21 B NE2 HIS 421 G HIS 421 1_555 Q FE HEA . G HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc22 T MG MG . G MG 605 1_555 F OE1 GLU 229 H GLU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc23 C ND1 HIS 192 B HIS 217 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc24 C O GLU 229 B GLU 254 1_555 Y CU CU1 . B CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc25 C SG CYS 231 B CYS 256 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc26 C ND1 HIS 235 B HIS 260 1_555 Y CU CU1 . B CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc27 C SD MET 238 B MET 263 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc28 Y CU CU1 . B CU1 301 1_555 Z CU CU1 . B CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc29 F ND1 HIS 192 H HIS 217 1_555 EA CU CU1 . H CU1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc30 EA CU CU1 . H CU1 301 1_555 FA CU CU1 . H CU1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WEH _atom_sites.fract_transf_matrix[1][1] 0.002948 _atom_sites.fract_transf_matrix[1][2] 0.001702 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 HEA A 1 601 567 HEA HEA . J 5 HEA A 1 602 568 HEA HEA . K 6 CU1 A 1 603 603 CU1 CU1 . L 7 MG A 1 604 604 MG MG . M 8 CA A 1 605 605 CA CA . N 9 3PE A 1 606 606 3PE 3PE . O 9 3PE A 1 607 607 3PE 3PE . P 10 LMU G 1 601 608 LMU LMU . Q 5 HEA G 1 602 567 HEA HEA . R 5 HEA G 1 603 568 HEA HEA . S 6 CU1 G 1 604 603 CU1 CU1 . T 7 MG G 1 605 604 MG MG . U 8 CA G 1 606 605 CA CA . V 9 3PE G 1 607 606 3PE 3PE . W 9 3PE G 1 608 607 3PE 3PE . X 10 LMU G 1 609 608 LMU LMU . Y 6 CU1 B 1 301 301 CU1 CU1 . Z 6 CU1 B 1 302 302 CU1 CU1 . AA 9 3PE C 1 301 301 3PE 3PE . BA 9 3PE C 1 302 302 3PE 3PE . CA 10 LMU C 1 303 303 LMU LMU . DA 9 3PE D 1 101 101 3PE 3PE . EA 6 CU1 H 1 301 301 CU1 CU1 . FA 6 CU1 H 1 302 302 CU1 CU1 . GA 9 3PE I 1 301 301 3PE 3PE . HA 9 3PE I 1 302 302 3PE 3PE . IA 9 3PE I 1 303 303 3PE 3PE . JA 9 3PE J 1 101 304 3PE 3PE . KA 11 HOH A 1 701 701 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 8 _atom_site.Cartn_x 26.887 _atom_site.Cartn_y 88.556 _atom_site.Cartn_z 10.722 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 103.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 606 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #