data_5WEI # _model_server_result.job_id BuSDX8VxGfrnE5rEHFcv2A _model_server_result.datetime_utc '2024-11-24 20:19:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5WEI # _exptl.entry_id 5WEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.362 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2S)-1-(2,6-dichlorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WEI _cell.length_a 89.474 _cell.length_b 89.474 _cell.length_c 133.662 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A OD1 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc4 A OD2 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 A OD1 ASP 120 A ASP 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 B MN MN . A MN 201 1_555 G O05 GY6 . A GY6 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 B MN MN . A MN 201 1_555 G O08 GY6 . A GY6 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc9 C MN MN . A MN 202 1_555 G O12 GY6 . A GY6 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc10 C MN MN . A MN 202 1_555 G O05 GY6 . A GY6 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc11 C MN MN . A MN 202 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc12 C MN MN . A MN 202 1_555 H O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? # _chem_comp.formula 'C24 H22 Cl2 N4 O4' _chem_comp.formula_weight 501.362 _chem_comp.id GY6 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2S)-1-(2,6-dichlorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C42 GY6 sing 129 n n C44 C42 GY6 doub 130 n y C44 C35 GY6 sing 131 n y C42 C41 GY6 sing 132 n y O34 C33 GY6 doub 133 n n C35 C37 GY6 doub 134 n y C41 C33 GY6 sing 135 n n C41 C39 GY6 doub 136 n y C33 N29 GY6 sing 137 n n C37 C39 GY6 sing 138 n y N29 C27 GY6 sing 139 n n N29 C30 GY6 sing 140 n n C39 CL2 GY6 sing 141 n n C27 C24 GY6 sing 142 n n C27 C01 GY6 sing 143 n n C24 C21 GY6 sing 144 n n C30 C21 GY6 sing 145 n n N09 C01 GY6 sing 146 n n N09 C07 GY6 sing 147 n n C01 N02 GY6 doub 148 n n O08 C07 GY6 doub 149 n n C07 C04 GY6 sing 150 n n N02 C03 GY6 sing 151 n n C04 C03 GY6 doub 152 n n C04 O05 GY6 sing 153 n n C03 C11 GY6 sing 154 n n C55 C46 GY6 doub 155 n y C55 C53 GY6 sing 156 n y C46 C48 GY6 sing 157 n y C53 C52 GY6 doub 158 n y N13 C11 GY6 sing 159 n n N13 C14 GY6 sing 160 n n C11 O12 GY6 doub 161 n n C48 C50 GY6 doub 162 n y C52 C50 GY6 sing 163 n y C52 C17 GY6 sing 164 n n C14 C17 GY6 sing 165 n n C14 H15 GY6 sing 166 n n C14 H16 GY6 sing 167 n n C17 H18 GY6 sing 168 n n C17 H19 GY6 sing 169 n n C21 H23 GY6 sing 170 n n C21 H22 GY6 sing 171 n n C24 H26 GY6 sing 172 n n C24 H25 GY6 sing 173 n n C27 H28 GY6 sing 174 n n C30 H31 GY6 sing 175 n n C30 H32 GY6 sing 176 n n C35 H36 GY6 sing 177 n n C37 H38 GY6 sing 178 n n C44 H45 GY6 sing 179 n n C46 H47 GY6 sing 180 n n C48 H49 GY6 sing 181 n n C50 H51 GY6 sing 182 n n C53 H54 GY6 sing 183 n n C55 H56 GY6 sing 184 n n N09 H10 GY6 sing 185 n n N13 H20 GY6 sing 186 n n O05 H06 GY6 sing 187 n n # _atom_sites.entry_id 5WEI _atom_sites.fract_transf_matrix[1][1] 0.011176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 2 MN A 1 202 2 MN MN . D 3 SO4 A 1 203 1 SO4 SO4 . E 3 SO4 A 1 204 2 SO4 SO4 . F 3 SO4 A 1 205 3 SO4 SO4 . G 4 GY6 A 1 206 1 GY6 GY6 . H 5 HOH A 1 301 12 HOH HOH . H 5 HOH A 2 302 10 HOH HOH . H 5 HOH A 3 303 16 HOH HOH . H 5 HOH A 4 304 9 HOH HOH . H 5 HOH A 5 305 14 HOH HOH . H 5 HOH A 6 306 4 HOH HOH . H 5 HOH A 7 307 5 HOH HOH . H 5 HOH A 8 308 6 HOH HOH . H 5 HOH A 9 309 11 HOH HOH . H 5 HOH A 10 310 15 HOH HOH . H 5 HOH A 11 311 3 HOH HOH . H 5 HOH A 12 312 17 HOH HOH . H 5 HOH A 13 313 13 HOH HOH . H 5 HOH A 14 314 2 HOH HOH . H 5 HOH A 15 315 8 HOH HOH . H 5 HOH A 16 316 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 GY6 . . . G 4 127.939 192.467 283.862 1 116.66 ? C01 GY6 206 A 1 HETATM 2 C C03 GY6 . . . G 4 130.008 193.492 283.903 1 111.22 ? C03 GY6 206 A 1 HETATM 3 C C04 GY6 . . . G 4 129.636 194.302 284.934 1 105.5 ? C04 GY6 206 A 1 HETATM 4 C C07 GY6 . . . G 4 128.349 194.198 285.47 1 108.49 ? C07 GY6 206 A 1 HETATM 5 C C11 GY6 . . . G 4 131.381 193.55 283.285 1 110.36 ? C11 GY6 206 A 1 HETATM 6 C C14 GY6 . . . G 4 132.927 192.427 281.763 1 108.98 ? C14 GY6 206 A 1 HETATM 7 C C17 GY6 . . . G 4 132.943 191.254 280.814 1 109.02 ? C17 GY6 206 A 1 HETATM 8 C C21 GY6 . . . G 4 128.457 190.184 281.736 1 118.17 ? C21 GY6 206 A 1 HETATM 9 C C24 GY6 . . . G 4 127.664 190.034 283.026 1 119.63 ? C24 GY6 206 A 1 HETATM 10 C C27 GY6 . . . G 4 127.046 191.431 283.214 1 119.09 ? C27 GY6 206 A 1 HETATM 11 C C30 GY6 . . . G 4 127.493 190.951 280.86 1 118.91 ? C30 GY6 206 A 1 HETATM 12 C C33 GY6 . . . G 4 125.81 192.677 281.45 1 118.83 ? C33 GY6 206 A 1 HETATM 13 C C41 GY6 . . . G 4 125.77 193.986 282.181 1 113.91 ? C41 GY6 206 A 1 HETATM 14 N N02 GY6 . . . G 4 129.172 192.591 283.378 1 115.4 ? N02 GY6 206 A 1 HETATM 15 N N09 GY6 . . . G 4 127.516 193.258 284.898 1 112.98 ? N09 GY6 206 A 1 HETATM 16 N N13 GY6 . . . G 4 131.606 192.631 282.348 1 109.75 ? N13 GY6 206 A 1 HETATM 17 N N29 GY6 . . . G 4 126.733 191.777 281.816 1 120.58 ? N29 GY6 206 A 1 HETATM 18 O O05 GY6 . . . G 4 130.442 195.217 285.492 1 96.2 ? O05 GY6 206 A 1 HETATM 19 O O08 GY6 . . . G 4 127.932 194.891 286.413 1 101.17 ? O08 GY6 206 A 1 HETATM 20 O O12 GY6 . . . G 4 132.215 194.375 283.653 1 110.36 ? O12 GY6 206 A 1 HETATM 21 O O34 GY6 . . . G 4 125.046 192.461 280.511 1 120.85 ? O34 GY6 206 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #