data_5WER # _model_server_result.job_id 2fXkgZRi8xCvvrS9PjtDSA _model_server_result.datetime_utc '2024-11-22 06:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":402}' # _entry.id 5WER # _exptl.entry_id 5WER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WER _cell.length_a 169.05 _cell.length_b 169.05 _cell.length_c 139.41 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WER _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 ? trimeric 3 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,M,N 1 1 D,E,F,O,P 2 1 G,H,I 3 1 J,K,L,Q,R,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 P N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 C SG CYS 18 C CYS 18 1_555 C SG CYS 101 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 C SG CYS 191 C CYS 191 1_555 C SG CYS 262 C CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 C SG CYS 300 C CYS 300 1_555 C SG CYS 361 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 F SG CYS 18 F CYS 18 1_555 F SG CYS 101 F CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 191 F CYS 191 1_555 F SG CYS 262 F CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 F SG CYS 300 F CYS 300 1_555 F SG CYS 361 F CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 G SG CYS 101 G CYS 101 1_555 G SG CYS 164 G CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 G SG CYS 203 G CYS 203 1_555 G SG CYS 259 G CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf15 H SG CYS 26 H CYS 25 1_555 H SG CYS 81 H CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 I SG CYS 18 I CYS 18 1_555 I SG CYS 101 I CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 I SG CYS 191 I CYS 191 1_555 I SG CYS 262 I CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf18 I SG CYS 300 I CYS 300 1_555 I SG CYS 361 I CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf19 J SG CYS 101 J CYS 101 1_555 J SG CYS 164 J CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf20 J SG CYS 203 J CYS 203 1_555 J SG CYS 259 J CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 K SG CYS 26 K CYS 25 1_555 K SG CYS 81 K CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf22 L SG CYS 18 L CYS 18 1_555 L SG CYS 101 L CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf23 L SG CYS 191 L CYS 191 1_555 L SG CYS 262 L CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf24 L SG CYS 300 L CYS 300 1_555 L SG CYS 361 L CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 C NE2 GLN 82 C GLN 82 1_555 N O1 GOL . C GOL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 5WER _atom_sites.fract_transf_matrix[1][1] 0.005915 _atom_sites.fract_transf_matrix[1][2] 0.003415 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 EDO A 1 301 301 EDO EDO . N 5 GOL C 1 401 401 GOL GOL . O 4 EDO E 1 101 101 EDO EDO . P 5 GOL F 1 401 401 GOL GOL . Q 6 1PE J 1 301 301 1PE 1PE . R 7 CIT L 1 401 401 CIT CIT . S 5 GOL L 1 402 402 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . S 5 40.128 60.161 32.462 1 88.73 ? C1 GOL 402 L 1 HETATM 2 O O1 GOL . . . S 5 40.672 61.423 32.781 1 94.8 ? O1 GOL 402 L 1 HETATM 3 C C2 GOL . . . S 5 39.911 60.059 30.956 1 101.36 ? C2 GOL 402 L 1 HETATM 4 O O2 GOL . . . S 5 40.567 61.127 30.309 1 94.89 ? O2 GOL 402 L 1 HETATM 5 C C3 GOL . . . S 5 40.464 58.73 30.453 1 87.03 ? C3 GOL 402 L 1 HETATM 6 O O3 GOL . . . S 5 40.189 58.586 29.078 1 66.14 ? O3 GOL 402 L 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #