data_5WEY # _model_server_result.job_id 8VySnvFRJja3ylRDnbmkjg _model_server_result.datetime_utc '2024-11-01 03:28:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5WEY # loop_ _exptl.entry_id _exptl.method 5WEY 'X-RAY DIFFRACTION' 5WEY 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WEY _cell.length_a 66.563 _cell.length_b 86.618 _cell.length_c 91.808 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MAN 1 B 1 MAN D 501 MAN 2 n B MAN 2 B 2 MAN D 501 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O2 MAN . B MAN 1 1_555 B C1 MAN . B MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 sing metalc ? metalc1 A OE1 GLU 8 A GLU 8 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc10 C MN MN . A MN 301 1_555 E O DOD . A DOD 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc11 C MN MN . A MN 301 1_555 E O DOD . A DOD 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc12 D CA CA . A CA 302 1_555 E O DOD . A DOD 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc13 D CA CA . A CA 302 1_555 E O DOD . A DOD 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WEY _atom_sites.fract_transf_matrix[1][1] 0.015023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 301 301 MN MN . D 4 CA A 1 302 401 CA CA . E 5 DOD A 1 401 1038 DOD DOD . E 5 DOD A 2 402 1095 DOD DOD . E 5 DOD A 3 403 1131 DOD DOD . E 5 DOD A 4 404 1143 DOD DOD . E 5 DOD A 5 405 1112 DOD DOD . E 5 DOD A 6 406 1036 DOD DOD . E 5 DOD A 7 407 1097 DOD DOD . E 5 DOD A 8 408 1016 DOD DOD . E 5 DOD A 9 409 1004 DOD DOD . E 5 DOD A 10 410 1076 DOD DOD . E 5 DOD A 11 411 1102 DOD DOD . E 5 DOD A 12 412 1032 DOD DOD . E 5 DOD A 13 413 1138 DOD DOD . E 5 DOD A 14 414 1145 DOD DOD . E 5 DOD A 15 415 1094 DOD DOD . E 5 DOD A 16 416 1020 DOD DOD . E 5 DOD A 17 417 1089 DOD DOD . E 5 DOD A 18 418 1009 DOD DOD . E 5 DOD A 19 419 1015 DOD DOD . E 5 DOD A 20 420 1149 DOD DOD . E 5 DOD A 21 421 1154 DOD DOD . E 5 DOD A 22 422 1011 DOD DOD . E 5 DOD A 23 423 1029 DOD DOD . E 5 DOD A 24 424 1124 DOD DOD . E 5 DOD A 25 425 1080 DOD DOD . E 5 DOD A 26 426 1045 DOD DOD . E 5 DOD A 27 427 1052 DOD DOD . E 5 DOD A 28 428 1005 DOD DOD . E 5 DOD A 29 429 1027 DOD DOD . E 5 DOD A 30 430 1126 DOD DOD . E 5 DOD A 31 431 1111 DOD DOD . E 5 DOD A 32 432 1141 DOD DOD . E 5 DOD A 33 433 1021 DOD DOD . E 5 DOD A 34 434 1060 DOD DOD . E 5 DOD A 35 435 1026 DOD DOD . E 5 DOD A 36 436 1013 DOD DOD . E 5 DOD A 37 437 1024 DOD DOD . E 5 DOD A 38 438 1008 DOD DOD . E 5 DOD A 39 439 1134 DOD DOD . E 5 DOD A 40 440 1053 DOD DOD . E 5 DOD A 41 441 1041 DOD DOD . E 5 DOD A 42 442 1002 DOD DOD . E 5 DOD A 43 443 1010 DOD DOD . E 5 DOD A 44 444 1017 DOD DOD . E 5 DOD A 45 445 1006 DOD DOD . E 5 DOD A 46 446 1035 DOD DOD . E 5 DOD A 47 447 1031 DOD DOD . E 5 DOD A 48 448 1078 DOD DOD . E 5 DOD A 49 449 1007 DOD DOD . E 5 DOD A 50 450 1071 DOD DOD . E 5 DOD A 51 451 1120 DOD DOD . E 5 DOD A 52 452 1109 DOD DOD . E 5 DOD A 53 453 1086 DOD DOD . E 5 DOD A 54 454 1001 DOD DOD . E 5 DOD A 55 455 1049 DOD DOD . E 5 DOD A 56 456 1003 DOD DOD . E 5 DOD A 57 457 1150 DOD DOD . E 5 DOD A 58 458 1118 DOD DOD . E 5 DOD A 59 459 1093 DOD DOD . E 5 DOD A 60 460 1040 DOD DOD . E 5 DOD A 61 461 1129 DOD DOD . E 5 DOD A 62 462 1106 DOD DOD . E 5 DOD A 63 463 1115 DOD DOD . E 5 DOD A 64 464 1019 DOD DOD . E 5 DOD A 65 465 1054 DOD DOD . E 5 DOD A 66 466 1128 DOD DOD . E 5 DOD A 67 467 1104 DOD DOD . E 5 DOD A 68 468 1037 DOD DOD . E 5 DOD A 69 469 1062 DOD DOD . E 5 DOD A 70 470 1030 DOD DOD . E 5 DOD A 71 471 1022 DOD DOD . E 5 DOD A 72 472 1098 DOD DOD . E 5 DOD A 73 473 1125 DOD DOD . E 5 DOD A 74 474 1042 DOD DOD . E 5 DOD A 75 475 1066 DOD DOD . E 5 DOD A 76 476 1101 DOD DOD . E 5 DOD A 77 477 1034 DOD DOD . E 5 DOD A 78 478 1012 DOD DOD . E 5 DOD A 79 479 1068 DOD DOD . E 5 DOD A 80 480 1059 DOD DOD . E 5 DOD A 81 481 1050 DOD DOD . E 5 DOD A 82 482 1043 DOD DOD . E 5 DOD A 83 483 1056 DOD DOD . E 5 DOD A 84 484 1039 DOD DOD . E 5 DOD A 85 485 1122 DOD DOD . E 5 DOD A 86 486 1014 DOD DOD . E 5 DOD A 87 487 1121 DOD DOD . E 5 DOD A 88 488 1025 DOD DOD . E 5 DOD A 89 489 1081 DOD DOD . E 5 DOD A 90 490 1074 DOD DOD . E 5 DOD A 91 491 1061 DOD DOD . E 5 DOD A 92 492 1087 DOD DOD . E 5 DOD A 93 493 1152 DOD DOD . E 5 DOD A 94 494 1114 DOD DOD . E 5 DOD A 95 495 1044 DOD DOD . E 5 DOD A 96 496 1058 DOD DOD . E 5 DOD A 97 497 1077 DOD DOD . E 5 DOD A 98 498 1028 DOD DOD . E 5 DOD A 99 499 1047 DOD DOD . E 5 DOD A 100 500 1048 DOD DOD . E 5 DOD A 101 501 1065 DOD DOD . E 5 DOD A 102 502 1018 DOD DOD . E 5 DOD A 103 503 1023 DOD DOD . E 5 DOD A 104 504 1046 DOD DOD . E 5 DOD A 105 505 1067 DOD DOD . E 5 DOD A 106 506 1051 DOD DOD . E 5 DOD A 107 507 1123 DOD DOD . E 5 DOD A 108 508 1057 DOD DOD . E 5 DOD A 109 509 1072 DOD DOD . E 5 DOD A 110 510 1079 DOD DOD . E 5 DOD A 111 511 1055 DOD DOD . E 5 DOD A 112 512 1075 DOD DOD . E 5 DOD A 113 513 1119 DOD DOD . E 5 DOD A 114 514 1100 DOD DOD . E 5 DOD A 115 515 1033 DOD DOD . E 5 DOD A 116 516 1110 DOD DOD . E 5 DOD A 117 517 1108 DOD DOD . E 5 DOD A 118 518 1070 DOD DOD . E 5 DOD A 119 519 1063 DOD DOD . E 5 DOD A 120 520 1082 DOD DOD . E 5 DOD A 121 521 1069 DOD DOD . E 5 DOD A 122 522 1090 DOD DOD . E 5 DOD A 123 523 1133 DOD DOD . E 5 DOD A 124 524 1064 DOD DOD . E 5 DOD A 125 525 1083 DOD DOD . E 5 DOD A 126 526 1136 DOD DOD . E 5 DOD A 127 527 1139 DOD DOD . E 5 DOD A 128 528 1085 DOD DOD . E 5 DOD A 129 529 1132 DOD DOD . E 5 DOD A 130 530 1153 DOD DOD . E 5 DOD A 131 531 1107 DOD DOD . E 5 DOD A 132 532 1148 DOD DOD . E 5 DOD A 133 533 1146 DOD DOD . E 5 DOD A 134 534 1137 DOD DOD . E 5 DOD A 135 535 1157 DOD DOD . E 5 DOD A 136 536 1073 DOD DOD . E 5 DOD A 137 537 1158 DOD DOD . E 5 DOD A 138 538 1151 DOD DOD . E 5 DOD A 139 539 1147 DOD DOD . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.491 _atom_site.Cartn_y 16.905 _atom_site.Cartn_z 25.192 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #