data_5WF6 # _model_server_result.job_id DxORYmj0rYn56UzT4AP0gg _model_server_result.datetime_utc '2024-11-21 13:43:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5WF6 # _exptl.entry_id 5WF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 777.871 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.2 _cell.angle_gamma 90 _cell.entry_id 5WF6 _cell.length_a 47.783 _cell.length_b 78.226 _cell.length_c 86.477 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 71 1_555 A SG CYS 190 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 105 A CYS 74 1_555 A SG CYS 177 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 108 A CYS 77 1_555 A SG CYS 197 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 437 A CYS 259 1_555 A SG CYS 440 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C40 H47 N11 O6' _chem_comp.formula_weight 777.871 _chem_comp.id UKA _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 UKA sing 422 n n O3 C1 UKA sing 423 n n C1 C4 UKA sing 424 n n C1 H1 UKA sing 425 n n C4 N1 UKA sing 426 n n C8 N1 UKA sing 427 n y N1 C10 UKA sing 428 n y C3 O1 UKA sing 429 n n O1 C4 UKA sing 430 n n O2 C2 UKA sing 431 n n C3 C2 UKA sing 432 n n C2 H2 UKA sing 433 n n C6 N2 UKA sing 434 n n N2 C5 UKA sing 435 n n N2 HN2 UKA sing 436 n n O2 HO2 UKA sing 437 n n C5 C3 UKA sing 438 n n C3 H3 UKA sing 439 n n C8 N3 UKA doub 440 n y N3 C9 UKA sing 441 n y O3 HO3 UKA sing 442 n n C4 H4 UKA sing 443 n n C12 N4 UKA sing 444 n y C11 N4 UKA doub 445 n y C5 O4 UKA doub 446 n n C10 N5 UKA sing 447 n y N5 C12 UKA doub 448 n y O5 C27 UKA doub 449 n n C7 C6 UKA sing 450 n n C6 H6 UKA sing 451 n n C6 H6A UKA sing 452 n n C11 N6 UKA sing 453 n n N6 C13 UKA sing 454 n n N6 HN6 UKA sing 455 n n O6 C30 UKA doub 456 n n C7 H7 UKA sing 457 n n C7 H7A UKA sing 458 n n C7 H7B UKA sing 459 n n C27 N7 UKA sing 460 n n N7 C28 UKA sing 461 n n N7 HN7 UKA sing 462 n n C8 H8 UKA sing 463 n n C29 N8 UKA sing 464 n n N8 C30 UKA sing 465 n n N8 HN8 UKA sing 466 n n C10 C9 UKA doub 467 n y C9 C11 UKA sing 468 n y C30 N9 UKA sing 469 n n N9 C31 UKA sing 470 n n N9 HN9 UKA sing 471 n n C33 N10 UKA sing 472 n n N10 C40 UKA sing 473 n n N10 C34 UKA sing 474 n n C40 N11 UKA doub 475 n y N11 C39 UKA sing 476 n y C12 C27 UKA sing 477 n n C13 C14 UKA sing 478 n n C13 H13 UKA sing 479 n n C13 H13A UKA sing 480 n n C16 C14 UKA sing 481 n n C14 C15 UKA sing 482 n n C14 H14 UKA sing 483 n n C15 C17 UKA doub 484 n y C15 C21 UKA sing 485 n y C26 C16 UKA doub 486 n y C16 C22 UKA sing 487 n y C17 C18 UKA sing 488 n y C17 H17 UKA sing 489 n n C18 C19 UKA doub 490 n y C18 H18 UKA sing 491 n n C20 C19 UKA sing 492 n y C19 H19 UKA sing 493 n n C21 C20 UKA doub 494 n y C20 H20 UKA sing 495 n n C21 H21 UKA sing 496 n n C23 C22 UKA doub 497 n y C22 H22 UKA sing 498 n n C24 C23 UKA sing 499 n y C23 H23 UKA sing 500 n n C25 C24 UKA doub 501 n y C24 H24 UKA sing 502 n n C25 C26 UKA sing 503 n y C25 H25 UKA sing 504 n n C26 H26 UKA sing 505 n n C28 C29 UKA sing 506 n n C28 H28 UKA sing 507 n n C28 H28A UKA sing 508 n n C29 H29 UKA sing 509 n n C29 H29A UKA sing 510 n n C32 C31 UKA sing 511 n n C31 C35 UKA sing 512 n n C31 H31 UKA sing 513 n n C32 C33 UKA sing 514 n n C32 H32 UKA sing 515 n n C32 H32A UKA sing 516 n n C33 H33 UKA sing 517 n n C33 H33A UKA sing 518 n n C35 C34 UKA sing 519 n n C34 H34 UKA sing 520 n n C34 H34A UKA sing 521 n n C35 H35 UKA sing 522 n n C35 H35A UKA sing 523 n n C36 C37 UKA doub 524 n y C36 C40 UKA sing 525 n y C36 H36 UKA sing 526 n n C37 C38 UKA sing 527 n y C37 H37 UKA sing 528 n n C38 C39 UKA doub 529 n y C38 H38 UKA sing 530 n n C39 H39 UKA sing 531 n n # _atom_sites.entry_id 5WF6 _atom_sites.fract_transf_matrix[1][1] 0.020928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004142 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UKA A 1 1201 1 UKA UKA . C 3 OLC A 1 1202 3 OLC OLC . D 4 HOH A 1 1301 1 HOH HOH . D 4 HOH A 2 1302 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UKA . . . B 2 -6.184 -11.592 49.267 1 90.12 ? C1 UKA 1201 A 1 HETATM 2 N N1 UKA . . . B 2 -5.186 -10.353 51.205 1 84.27 ? N1 UKA 1201 A 1 HETATM 3 O O1 UKA . . . B 2 -3.877 -11.145 49.445 1 85.98 ? O1 UKA 1201 A 1 HETATM 4 C C2 UKA . . . B 2 -5.809 -10.577 48.187 1 87.43 ? C2 UKA 1201 A 1 HETATM 5 N N2 UKA . . . B 2 -2.596 -9.434 46.989 1 94.18 ? N2 UKA 1201 A 1 HETATM 6 O O2 UKA . . . B 2 -6.398 -10.893 46.93 1 80.16 ? O2 UKA 1201 A 1 HETATM 7 C C3 UKA . . . B 2 -4.284 -10.735 48.13 1 88.43 ? C3 UKA 1201 A 1 HETATM 8 N N3 UKA . . . B 2 -5.097 -8.287 52.086 1 80.47 ? N3 UKA 1201 A 1 HETATM 9 O O3 UKA . . . B 2 -6.232 -12.923 48.764 1 91.65 ? O3 UKA 1201 A 1 HETATM 10 C C4 UKA . . . B 2 -5.015 -11.432 50.236 1 88.69 ? C4 UKA 1201 A 1 HETATM 11 N N4 UKA . . . B 2 -6.584 -10.122 54.949 1 83.56 ? N4 UKA 1201 A 1 HETATM 12 O O4 UKA . . . B 2 -4.16 -8.34 48.191 1 79.66 ? O4 UKA 1201 A 1 HETATM 13 C C5 UKA . . . B 2 -3.676 -9.387 47.768 1 83.79 ? C5 UKA 1201 A 1 HETATM 14 N N5 UKA . . . B 2 -6.183 -11.536 53.077 1 86.5 ? N5 UKA 1201 A 1 HETATM 15 O O5 UKA . . . B 2 -7.275 -13.6 54.415 1 77.34 ? O5 UKA 1201 A 1 HETATM 16 C C6 UKA . . . B 2 -1.828 -8.262 46.582 1 97.23 ? C6 UKA 1201 A 1 HETATM 17 N N6 UKA . . . B 2 -6.094 -7.847 54.966 1 87.74 ? N6 UKA 1201 A 1 HETATM 18 O O6 UKA . . . B 2 -10.27 -12.663 59.509 1 86.33 ? O6 UKA 1201 A 1 HETATM 19 C C7 UKA . . . B 2 -2.645 -7.313 45.777 1 94.24 ? C7 UKA 1201 A 1 HETATM 20 N N7 UKA . . . B 2 -7.774 -12.317 56.197 1 83.04 ? N7 UKA 1201 A 1 HETATM 21 C C8 UKA . . . B 2 -4.839 -9.037 51.043 1 86.52 ? C8 UKA 1201 A 1 HETATM 22 N N8 UKA . . . B 2 -8.045 -12.612 59.129 1 84.24 ? N8 UKA 1201 A 1 HETATM 23 C C9 UKA . . . B 2 -5.654 -9.171 52.999 1 88.53 ? C9 UKA 1201 A 1 HETATM 24 N N9 UKA . . . B 2 -8.953 -11.28 60.728 1 87.28 ? N9 UKA 1201 A 1 HETATM 25 C C10 UKA . . . B 2 -5.715 -10.445 52.467 1 87.28 ? C10 UKA 1201 A 1 HETATM 26 N N10 UKA . . . B 2 -11.398 -8.552 62.851 1 101.35 ? N10 UKA 1201 A 1 HETATM 27 C C11 UKA . . . B 2 -6.118 -9.024 54.322 1 86.53 ? C11 UKA 1201 A 1 HETATM 28 N N11 UKA . . . B 2 -10.557 -6.779 64.067 1 107.44 ? N11 UKA 1201 A 1 HETATM 29 C C12 UKA . . . B 2 -6.615 -11.307 54.321 1 82.2 ? C12 UKA 1201 A 1 HETATM 30 C C13 UKA . . . B 2 -6.083 -7.711 56.415 1 86.53 ? C13 UKA 1201 A 1 HETATM 31 C C14 UKA . . . B 2 -7.198 -8.331 57.26 1 87.93 ? C14 UKA 1201 A 1 HETATM 32 C C15 UKA . . . B 2 -8.519 -8.569 56.541 1 84.36 ? C15 UKA 1201 A 1 HETATM 33 C C16 UKA . . . B 2 -7.423 -7.539 58.542 1 96.72 ? C16 UKA 1201 A 1 HETATM 34 C C17 UKA . . . B 2 -9.302 -9.664 56.878 1 76.56 ? C17 UKA 1201 A 1 HETATM 35 C C18 UKA . . . B 2 -10.498 -9.903 56.227 1 79.02 ? C18 UKA 1201 A 1 HETATM 36 C C19 UKA . . . B 2 -10.93 -9.052 55.235 1 85.66 ? C19 UKA 1201 A 1 HETATM 37 C C20 UKA . . . B 2 -10.167 -7.955 54.898 1 88 ? C20 UKA 1201 A 1 HETATM 38 C C21 UKA . . . B 2 -8.97 -7.713 55.547 1 90.46 ? C21 UKA 1201 A 1 HETATM 39 C C22 UKA . . . B 2 -7.385 -8.167 59.779 1 97.05 ? C22 UKA 1201 A 1 HETATM 40 C C23 UKA . . . B 2 -7.638 -7.455 60.938 1 94.02 ? C23 UKA 1201 A 1 HETATM 41 C C24 UKA . . . B 2 -7.929 -6.111 60.878 1 87.52 ? C24 UKA 1201 A 1 HETATM 42 C C25 UKA . . . B 2 -7.964 -5.475 59.658 1 85.71 ? C25 UKA 1201 A 1 HETATM 43 C C26 UKA . . . B 2 -7.711 -6.182 58.496 1 96.05 ? C26 UKA 1201 A 1 HETATM 44 C C27 UKA . . . B 2 -7.246 -12.514 54.987 1 79.28 ? C27 UKA 1201 A 1 HETATM 45 C C28 UKA . . . B 2 -8.624 -13.306 56.844 1 89.31 ? C28 UKA 1201 A 1 HETATM 46 C C29 UKA . . . B 2 -8.063 -13.721 58.187 1 86.98 ? C29 UKA 1201 A 1 HETATM 47 C C30 UKA . . . B 2 -9.159 -12.213 59.772 1 84.97 ? C30 UKA 1201 A 1 HETATM 48 C C31 UKA . . . B 2 -10.035 -10.741 61.545 1 92.65 ? C31 UKA 1201 A 1 HETATM 49 C C32 UKA . . . B 2 -10.861 -9.74 60.762 1 93.6 ? C32 UKA 1201 A 1 HETATM 50 C C33 UKA . . . B 2 -11.96 -9.164 61.643 1 90.79 ? C33 UKA 1201 A 1 HETATM 51 C C34 UKA . . . B 2 -10.621 -9.518 63.636 1 94.37 ? C34 UKA 1201 A 1 HETATM 52 C C35 UKA . . . B 2 -9.487 -10.108 62.809 1 98.57 ? C35 UKA 1201 A 1 HETATM 53 C C36 UKA . . . B 2 -11.771 -6.305 62.051 1 97.74 ? C36 UKA 1201 A 1 HETATM 54 C C37 UKA . . . B 2 -11.591 -4.951 62.265 1 97.36 ? C37 UKA 1201 A 1 HETATM 55 C C38 UKA . . . B 2 -10.902 -4.514 63.37 1 96.93 ? C38 UKA 1201 A 1 HETATM 56 C C39 UKA . . . B 2 -10.406 -5.459 64.238 1 96.93 ? C39 UKA 1201 A 1 HETATM 57 C C40 UKA . . . B 2 -11.235 -7.191 62.987 1 109.5 ? C40 UKA 1201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 57 #