data_5WFN # _model_server_result.job_id AeoXMHgNCq4CsUPkbOtR6A _model_server_result.datetime_utc '2025-02-24 20:09:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5WFN # _exptl.entry_id 5WFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.29 _cell.angle_beta 90.94 _cell.angle_gamma 107.97 _cell.entry_id 5WFN _cell.length_a 65.35 _cell.length_b 65.65 _cell.length_c 81.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 138 A GLN 137 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc2 E O2G ANP . A ANP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 C OE1 GLN 138 B GLN 137 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 G O2G ANP . B ANP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5WFN _atom_sites.fract_transf_matrix[1][1] 0.015302 _atom_sites.fract_transf_matrix[1][2] 0.004963 _atom_sites.fract_transf_matrix[1][3] 0.001329 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016013 _atom_sites.fract_transf_matrix[2][3] 0.003459 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 401 401 ANP ANP . F 4 MG A 1 402 402 MG MG . G 3 ANP B 1 401 401 ANP ANP . H 4 MG B 1 402 402 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 3 -19.683 -31.232 -44.455 1 80.94 ? PG ANP 401 B 1 HETATM 2 O O1G ANP . . . G 3 -19.142 -31.357 -45.854 1 55.68 ? O1G ANP 401 B 1 HETATM 3 O O2G ANP . . . G 3 -20.818 -30.117 -44.372 1 52.86 ? O2G ANP 401 B 1 HETATM 4 O O3G ANP . . . G 3 -20.325 -32.603 -43.972 1 46.57 ? O3G ANP 401 B 1 HETATM 5 P PB ANP . . . G 3 -18.671 -29.886 -42.206 1 81.35 ? PB ANP 401 B 1 HETATM 6 O O1B ANP . . . G 3 -20.059 -30.154 -41.691 1 42.09 ? O1B ANP 401 B 1 HETATM 7 O O2B ANP . . . G 3 -17.539 -30.087 -41.133 1 34.26 ? O2B ANP 401 B 1 HETATM 8 N N3B ANP . . . G 3 -18.322 -30.894 -43.495 1 52.54 ? N3B ANP 401 B 1 HETATM 9 P PA ANP . . . G 3 -18.452 -27.151 -41.915 1 70.81 ? PA ANP 401 B 1 HETATM 10 O O1A ANP . . . G 3 -19.724 -26.481 -41.544 1 60.32 ? O1A ANP 401 B 1 HETATM 11 O O2A ANP . . . G 3 -17.647 -27.662 -40.716 1 108.62 ? O2A ANP 401 B 1 HETATM 12 O O3A ANP . . . G 3 -18.703 -28.439 -42.791 1 94.9 ? O3A ANP 401 B 1 HETATM 13 O O5' ANP . . . G 3 -17.572 -26.213 -42.842 1 53.82 ? O5' ANP 401 B 1 HETATM 14 C C5' ANP . . . G 3 -16.228 -25.8 -42.4 1 75.66 ? C5' ANP 401 B 1 HETATM 15 C C4' ANP . . . G 3 -15.647 -24.847 -43.417 1 48.66 ? C4' ANP 401 B 1 HETATM 16 O O4' ANP . . . G 3 -16.125 -23.517 -43.138 1 54.59 ? O4' ANP 401 B 1 HETATM 17 C C3' ANP . . . G 3 -14.117 -24.763 -43.479 1 63.3 ? C3' ANP 401 B 1 HETATM 18 O O3' ANP . . . G 3 -13.593 -24.96 -44.793 1 77.4 ? O3' ANP 401 B 1 HETATM 19 C C2' ANP . . . G 3 -13.807 -23.341 -42.989 1 65.86 ? C2' ANP 401 B 1 HETATM 20 O O2' ANP . . . G 3 -12.648 -22.822 -43.646 1 56.76 ? O2' ANP 401 B 1 HETATM 21 C C1' ANP . . . G 3 -15.087 -22.595 -43.367 1 69.88 ? C1' ANP 401 B 1 HETATM 22 N N9 ANP . . . G 3 -15.35 -21.37 -42.596 1 73.3 ? N9 ANP 401 B 1 HETATM 23 C C8 ANP . . . G 3 -15.514 -21.263 -41.238 1 55.5 ? C8 ANP 401 B 1 HETATM 24 N N7 ANP . . . G 3 -15.713 -20.036 -40.817 1 42.71 ? N7 ANP 401 B 1 HETATM 25 C C5 ANP . . . G 3 -15.69 -19.279 -41.981 1 50.29 ? C5 ANP 401 B 1 HETATM 26 C C6 ANP . . . G 3 -15.848 -17.897 -42.22 1 54.93 ? C6 ANP 401 B 1 HETATM 27 N N6 ANP . . . G 3 -16.069 -16.995 -41.261 1 83.26 ? N6 ANP 401 B 1 HETATM 28 N N1 ANP . . . G 3 -15.773 -17.467 -43.501 1 52.91 ? N1 ANP 401 B 1 HETATM 29 C C2 ANP . . . G 3 -15.54 -18.363 -44.466 1 47.69 ? C2 ANP 401 B 1 HETATM 30 N N3 ANP . . . G 3 -15.377 -19.686 -44.363 1 43.22 ? N3 ANP 401 B 1 HETATM 31 C C4 ANP . . . G 3 -15.47 -20.086 -43.085 1 61.05 ? C4 ANP 401 B 1 HETATM 32 H HNB1 ANP . . . G 3 -17.675 -30.516 -44.009 1 63.61 ? HNB1 ANP 401 B 1 HETATM 33 H "H5'1" ANP . . . G 3 -15.657 -26.583 -42.318 1 91.06 ? "H5'1" ANP 401 B 1 HETATM 34 H "H5'2" ANP . . . G 3 -16.294 -25.351 -41.531 1 91.06 ? "H5'2" ANP 401 B 1 HETATM 35 H H4' ANP . . . G 3 -15.974 -25.077 -44.311 1 58.67 ? H4' ANP 401 B 1 HETATM 36 H H3' ANP . . . G 3 -13.748 -25.402 -42.865 1 76.3 ? H3' ANP 401 B 1 HETATM 37 H H2' ANP . . . G 3 -13.71 -23.33 -42.029 1 79.26 ? H2' ANP 401 B 1 HETATM 38 H HO2' ANP . . . G 3 -12.035 -22.607 -43.041 1 68.39 ? HO2' ANP 401 B 1 HETATM 39 H H1' ANP . . . G 3 -15.041 -22.388 -44.314 1 84.01 ? H1' ANP 401 B 1 HETATM 40 H H8 ANP . . . G 3 -15.471 -22.014 -40.649 1 66.53 ? H8 ANP 401 B 1 HETATM 41 H HN61 ANP . . . G 3 -16.184 -16.105 -41.48 1 99.51 ? HN61 ANP 401 B 1 HETATM 42 H HN62 ANP . . . G 3 -16.107 -17.258 -40.386 1 99.51 ? HN62 ANP 401 B 1 HETATM 43 H H2 ANP . . . G 3 -15.492 -18.005 -45.368 1 57.13 ? H2 ANP 401 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #