data_5WFZ # _model_server_result.job_id akr8-lklp1FAw_YryCzPZA _model_server_result.datetime_utc '2024-11-13 20:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5WFZ # _exptl.entry_id 5WFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 566.414 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2S)-1-(3,5-dichloropyridine-4-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-[2-(phenylsulfonyl)ethyl]-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WFZ _cell.length_a 90.3 _cell.length_b 90.3 _cell.length_c 133.353 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_885 -x+3,-y+3,z -1 0 0 0 -1 0 0 0 1 270.9 270.9 0 3 'crystal symmetry operation' 3_855 -y+3,x,z 0 -1 0 1 0 0 0 0 1 270.9 0 0 4 'crystal symmetry operation' 4_585 y,-x+3,z 0 1 0 -1 0 0 0 0 1 0 270.9 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 A OD1 ASP 120 A ASP 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc7 B MN MN . A MN 201 1_555 F O6 KU0 . A KU0 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 B MN MN . A MN 201 1_555 F O5 KU0 . A KU0 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc9 C MN MN . A MN 202 1_555 F O2 KU0 . A KU0 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc10 C MN MN . A MN 202 1_555 F O5 KU0 . A KU0 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc11 C MN MN . A MN 202 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc12 C MN MN . A MN 202 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C23 H21 Cl2 N5 O6 S' _chem_comp.formula_weight 566.414 _chem_comp.id KU0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2S)-1-(3,5-dichloropyridine-4-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-[2-(phenylsulfonyl)ethyl]-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 KU0 doub 186 n n CL2 C21 KU0 sing 187 n n C3 C2 KU0 sing 188 n n C3 N1 KU0 sing 189 n n C21 C2 KU0 doub 190 n y C21 C22 KU0 sing 191 n y C2 C1 KU0 sing 192 n y C20 N1 KU0 sing 193 n n C20 C19 KU0 sing 194 n n C22 N5 KU0 doub 195 n y C1 CL1 KU0 sing 196 n n C1 C23 KU0 doub 197 n y N1 C4 KU0 sing 198 n n C8 N3 KU0 sing 199 n n C8 C9 KU0 sing 200 n n N5 C23 KU0 sing 201 n y N3 C7 KU0 sing 202 n n O3 S1 KU0 doub 203 n n C19 C18 KU0 sing 204 n n C9 S1 KU0 sing 205 n n C7 O2 KU0 doub 206 n n C7 C6 KU0 sing 207 n n C4 C18 KU0 sing 208 n n C4 C5 KU0 sing 209 n n N2 C6 KU0 sing 210 n n N2 C5 KU0 doub 211 n n C6 C16 KU0 doub 212 n n C5 N4 KU0 sing 213 n n S1 O4 KU0 doub 214 n n S1 C10 KU0 sing 215 n n N4 C17 KU0 sing 216 n n C16 O5 KU0 sing 217 n n C16 C17 KU0 sing 218 n n C10 C11 KU0 doub 219 n y C10 C15 KU0 sing 220 n y C11 C12 KU0 sing 221 n y C17 O6 KU0 doub 222 n n C12 C13 KU0 doub 223 n y C15 C14 KU0 doub 224 n y C13 C14 KU0 sing 225 n y C11 H1 KU0 sing 226 n n C12 H2 KU0 sing 227 n n C13 H3 KU0 sing 228 n n C14 H4 KU0 sing 229 n n C15 H5 KU0 sing 230 n n C18 H6 KU0 sing 231 n n C18 H7 KU0 sing 232 n n C19 H8 KU0 sing 233 n n C19 H9 KU0 sing 234 n n C20 H10 KU0 sing 235 n n C20 H11 KU0 sing 236 n n C22 H12 KU0 sing 237 n n C23 H13 KU0 sing 238 n n C4 H14 KU0 sing 239 n n C8 H15 KU0 sing 240 n n C8 H16 KU0 sing 241 n n C9 H17 KU0 sing 242 n n C9 H18 KU0 sing 243 n n N3 H19 KU0 sing 244 n n N4 H20 KU0 sing 245 n n O5 H21 KU0 sing 246 n n # _atom_sites.entry_id 5WFZ _atom_sites.fract_transf_matrix[1][1] 0.011074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 2 MN A 1 202 2 MN MN . D 3 SO4 A 1 203 1 SO4 SO4 . E 3 SO4 A 1 204 2 SO4 SO4 . F 4 KU0 A 1 205 1 KU0 KU0 . G 5 GOL A 1 206 1 GOL GOL . H 6 HOH A 1 301 9 HOH HOH . H 6 HOH A 2 302 6 HOH HOH . H 6 HOH A 3 303 20 HOH HOH . H 6 HOH A 4 304 31 HOH HOH . H 6 HOH A 5 305 32 HOH HOH . H 6 HOH A 6 306 2 HOH HOH . H 6 HOH A 7 307 3 HOH HOH . H 6 HOH A 8 308 10 HOH HOH . H 6 HOH A 9 309 4 HOH HOH . H 6 HOH A 10 310 13 HOH HOH . H 6 HOH A 11 311 23 HOH HOH . H 6 HOH A 12 312 34 HOH HOH . H 6 HOH A 13 313 7 HOH HOH . H 6 HOH A 14 314 33 HOH HOH . H 6 HOH A 15 315 8 HOH HOH . H 6 HOH A 16 316 29 HOH HOH . H 6 HOH A 17 317 17 HOH HOH . H 6 HOH A 18 318 15 HOH HOH . H 6 HOH A 19 319 16 HOH HOH . H 6 HOH A 20 320 18 HOH HOH . H 6 HOH A 21 321 30 HOH HOH . H 6 HOH A 22 322 26 HOH HOH . H 6 HOH A 23 323 19 HOH HOH . H 6 HOH A 24 324 24 HOH HOH . H 6 HOH A 25 325 5 HOH HOH . H 6 HOH A 26 326 22 HOH HOH . H 6 HOH A 27 327 21 HOH HOH . H 6 HOH A 28 328 25 HOH HOH . H 6 HOH A 29 329 27 HOH HOH . H 6 HOH A 30 330 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KU0 . . . F 4 127.341 105.346 414.702 1 177.07 ? C1 KU0 205 A 1 HETATM 2 C C10 KU0 . . . F 4 134.22 102.209 417.588 1 104.11 ? C10 KU0 205 A 1 HETATM 3 C C11 KU0 . . . F 4 134.082 103.243 418.498 1 102.13 ? C11 KU0 205 A 1 HETATM 4 C C12 KU0 . . . F 4 133.029 103.224 419.394 1 100.68 ? C12 KU0 205 A 1 HETATM 5 C C13 KU0 . . . F 4 132.125 102.186 419.382 1 101.01 ? C13 KU0 205 A 1 HETATM 6 C C14 KU0 . . . F 4 132.265 101.16 418.477 1 102.3 ? C14 KU0 205 A 1 HETATM 7 C C15 KU0 . . . F 4 133.312 101.163 417.574 1 103.71 ? C15 KU0 205 A 1 HETATM 8 C C16 KU0 . . . F 4 131.06 105.772 417.842 1 73.64 ? C16 KU0 205 A 1 HETATM 9 C C17 KU0 . . . F 4 129.805 105.579 418.416 1 75.23 ? C17 KU0 205 A 1 HETATM 10 C C18 KU0 . . . F 4 128.844 101.298 416.804 1 114.59 ? C18 KU0 205 A 1 HETATM 11 C C19 KU0 . . . F 4 129.908 100.729 415.878 1 118.9 ? C19 KU0 205 A 1 HETATM 12 C C2 KU0 . . . F 4 128.521 104.843 414.152 1 167.6 ? C2 KU0 205 A 1 HETATM 13 C C20 KU0 . . . F 4 129.383 101.146 414.526 1 123 ? C20 KU0 205 A 1 HETATM 14 C C21 KU0 . . . F 4 129.556 105.754 413.939 1 184.95 ? C21 KU0 205 A 1 HETATM 15 C C22 KU0 . . . F 4 129.376 107.09 414.265 1 181.67 ? C22 KU0 205 A 1 HETATM 16 C C23 KU0 . . . F 4 127.244 106.698 414.997 1 177.86 ? C23 KU0 205 A 1 HETATM 17 C C3 KU0 . . . F 4 128.729 103.4 413.8 1 146.07 ? C3 KU0 205 A 1 HETATM 18 C C4 KU0 . . . F 4 128.627 102.713 416.235 1 110.74 ? C4 KU0 205 A 1 HETATM 19 C C5 KU0 . . . F 4 129.48 103.806 416.84 1 92.77 ? C5 KU0 205 A 1 HETATM 20 C C6 KU0 . . . F 4 131.46 104.987 416.802 1 79.27 ? C6 KU0 205 A 1 HETATM 21 C C7 KU0 . . . F 4 132.816 105.178 416.176 1 79.94 ? C7 KU0 205 A 1 HETATM 22 C C8 KU0 . . . F 4 134.533 104.158 414.765 1 96.61 ? C8 KU0 205 A 1 HETATM 23 C C9 KU0 . . . F 4 135.61 103.876 415.795 1 104 ? C9 KU0 205 A 1 HETATM 24 N N1 KU0 . . . F 4 128.884 102.506 414.79 1 126.66 ? N1 KU0 205 A 1 HETATM 25 N N2 KU0 . . . F 4 130.685 104.013 416.306 1 85.18 ? N2 KU0 205 A 1 HETATM 26 N N3 KU0 . . . F 4 133.197 104.216 415.337 1 87.31 ? N3 KU0 205 A 1 HETATM 27 N N4 KU0 . . . F 4 129.028 104.576 417.879 1 84 ? N4 KU0 205 A 1 HETATM 28 N N5 KU0 . . . F 4 128.242 107.551 414.783 1 180.69 ? N5 KU0 205 A 1 HETATM 29 O O1 KU0 . . . F 4 128.847 103.065 412.623 1 147.37 ? O1 KU0 205 A 1 HETATM 30 O O2 KU0 . . . F 4 133.511 106.151 416.465 1 73.31 ? O2 KU0 205 A 1 HETATM 31 O O3 KU0 . . . F 4 136.77 101.996 417.177 1 119.18 ? O3 KU0 205 A 1 HETATM 32 O O4 KU0 . . . F 4 135.239 101.327 415.366 1 110.48 ? O4 KU0 205 A 1 HETATM 33 O O5 KU0 . . . F 4 131.809 106.75 418.371 1 67.96 ? O5 KU0 205 A 1 HETATM 34 O O6 KU0 . . . F 4 129.371 106.254 419.361 1 66.9 ? O6 KU0 205 A 1 HETATM 35 S S1 KU0 . . . F 4 135.561 102.221 416.44 1 108.26 ? S1 KU0 205 A 1 HETATM 36 CL CL1 KU0 . . . F 4 125.997 104.312 415.007 1 177.9 ? CL1 KU0 205 A 1 HETATM 37 CL CL2 KU0 . . . F 4 131.057 105.234 413.271 1 193.78 ? CL2 KU0 205 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #