data_5WG4 # _model_server_result.job_id k-hGsOyQb3iZ3JES86-x4Q _model_server_result.datetime_utc '2024-11-05 00:12:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 5WG4 # _exptl.entry_id 5WG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.515 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-fluoro-5-[(3S,4R)-3-{[(1H-indazol-5-yl)oxy]methyl}piperidin-4-yl]-N-[(pyridin-2-yl)methyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WG4 _cell.length_a 61.146 _cell.length_b 241.443 _cell.length_c 214.835 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H26 F N5 O2' _chem_comp.formula_weight 459.515 _chem_comp.id AFV _chem_comp.mon_nstd_flag . _chem_comp.name 2-fluoro-5-[(3S,4R)-3-{[(1H-indazol-5-yl)oxy]methyl}piperidin-4-yl]-N-[(pyridin-2-yl)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AFV doub 1 n y C1 C AFV sing 2 n y F C AFV sing 3 n n C2 C3 AFV sing 4 n y C C18 AFV doub 5 n y C9 C8 AFV doub 6 n y C9 C10 AFV sing 7 n y C8 C7 AFV sing 8 n y C3 C4 AFV sing 9 n n C3 C17 AFV doub 10 n y O1 C19 AFV doub 11 n n C18 C17 AFV sing 12 n y C18 C19 AFV sing 13 n n C10 N AFV sing 14 n y C10 C12 AFV doub 15 n y C16 C4 AFV sing 16 n n C16 C15 AFV sing 17 n n N N1 AFV sing 18 n y C4 C5 AFV sing 19 n n C7 O AFV sing 20 n n C7 C13 AFV doub 21 n y O C6 AFV sing 22 n n C19 N3 AFV sing 23 n n C12 C13 AFV sing 24 n y C12 C11 AFV sing 25 n y N1 C11 AFV doub 26 n y C15 N2 AFV sing 27 n n C5 C6 AFV sing 28 n n C5 C14 AFV sing 29 n n N3 C20 AFV sing 30 n n N2 C14 AFV sing 31 n n C20 C21 AFV sing 32 n n C21 C25 AFV doub 33 n y C21 N4 AFV sing 34 n y C25 C24 AFV sing 35 n y N4 C22 AFV doub 36 n y C24 C23 AFV doub 37 n y C22 C23 AFV sing 38 n y N H1 AFV sing 39 n n C1 H2 AFV sing 40 n n C2 H3 AFV sing 41 n n N2 H4 AFV sing 42 n n N3 H6 AFV sing 43 n n C4 H7 AFV sing 44 n n C5 H8 AFV sing 45 n n C6 H9 AFV sing 46 n n C6 H10 AFV sing 47 n n C8 H11 AFV sing 48 n n C9 H12 AFV sing 49 n n C11 H13 AFV sing 50 n n C13 H14 AFV sing 51 n n C14 H15 AFV sing 52 n n C14 H16 AFV sing 53 n n C15 H17 AFV sing 54 n n C15 H18 AFV sing 55 n n C16 H19 AFV sing 56 n n C16 H20 AFV sing 57 n n C17 H21 AFV sing 58 n n C20 H22 AFV sing 59 n n C20 H23 AFV sing 60 n n C22 H24 AFV sing 61 n n C23 H25 AFV sing 62 n n C24 H26 AFV sing 63 n n C25 H27 AFV sing 64 n n # _atom_sites.entry_id 5WG4 _atom_sites.fract_transf_matrix[1][1] 0.016354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 AFV A 1 701 701 AFV IPP . E 5 HOH A 1 801 810 HOH HOH . E 5 HOH A 2 802 851 HOH HOH . E 5 HOH A 3 803 878 HOH HOH . E 5 HOH A 4 804 804 HOH HOH . E 5 HOH A 5 805 808 HOH HOH . E 5 HOH A 6 806 885 HOH HOH . E 5 HOH A 7 807 818 HOH HOH . E 5 HOH A 8 808 817 HOH HOH . E 5 HOH A 9 809 879 HOH HOH . E 5 HOH A 10 810 839 HOH HOH . E 5 HOH A 11 811 867 HOH HOH . E 5 HOH A 12 812 809 HOH HOH . E 5 HOH A 13 813 840 HOH HOH . E 5 HOH A 14 814 813 HOH HOH . E 5 HOH A 15 815 849 HOH HOH . E 5 HOH A 16 816 814 HOH HOH . E 5 HOH A 17 817 875 HOH HOH . E 5 HOH A 18 818 854 HOH HOH . E 5 HOH A 19 819 822 HOH HOH . E 5 HOH A 20 820 807 HOH HOH . E 5 HOH A 21 821 825 HOH HOH . E 5 HOH A 22 822 837 HOH HOH . E 5 HOH A 23 823 903 HOH HOH . E 5 HOH A 24 824 806 HOH HOH . E 5 HOH A 25 825 881 HOH HOH . E 5 HOH A 26 826 880 HOH HOH . E 5 HOH A 27 827 863 HOH HOH . E 5 HOH A 28 828 852 HOH HOH . E 5 HOH A 29 829 815 HOH HOH . E 5 HOH A 30 830 832 HOH HOH . E 5 HOH A 31 831 882 HOH HOH . E 5 HOH A 32 832 876 HOH HOH . E 5 HOH A 33 833 831 HOH HOH . E 5 HOH A 34 834 866 HOH HOH . E 5 HOH A 35 835 842 HOH HOH . E 5 HOH A 36 836 864 HOH HOH . E 5 HOH A 37 837 850 HOH HOH . E 5 HOH A 38 838 820 HOH HOH . E 5 HOH A 39 839 833 HOH HOH . E 5 HOH A 40 840 868 HOH HOH . E 5 HOH A 41 841 853 HOH HOH . E 5 HOH A 42 842 856 HOH HOH . E 5 HOH A 43 843 857 HOH HOH . E 5 HOH A 44 844 821 HOH HOH . E 5 HOH A 45 845 830 HOH HOH . E 5 HOH A 46 846 874 HOH HOH . E 5 HOH A 47 847 805 HOH HOH . E 5 HOH A 48 848 848 HOH HOH . E 5 HOH A 49 849 860 HOH HOH . E 5 HOH A 50 850 838 HOH HOH . E 5 HOH A 51 851 803 HOH HOH . E 5 HOH A 52 852 834 HOH HOH . E 5 HOH A 53 853 816 HOH HOH . E 5 HOH A 54 854 823 HOH HOH . E 5 HOH A 55 855 836 HOH HOH . E 5 HOH A 56 856 883 HOH HOH . E 5 HOH A 57 857 845 HOH HOH . E 5 HOH A 58 858 855 HOH HOH . E 5 HOH A 59 859 819 HOH HOH . E 5 HOH A 60 860 811 HOH HOH . E 5 HOH A 61 861 862 HOH HOH . E 5 HOH A 62 862 873 HOH HOH . E 5 HOH A 63 863 900 HOH HOH . E 5 HOH A 64 864 859 HOH HOH . E 5 HOH A 65 865 884 HOH HOH . E 5 HOH A 66 866 802 HOH HOH . E 5 HOH A 67 867 829 HOH HOH . E 5 HOH A 68 868 844 HOH HOH . E 5 HOH A 69 869 858 HOH HOH . E 5 HOH A 70 870 824 HOH HOH . E 5 HOH A 71 871 801 HOH HOH . E 5 HOH A 72 872 847 HOH HOH . E 5 HOH A 73 873 869 HOH HOH . E 5 HOH A 74 874 841 HOH HOH . E 5 HOH A 75 875 828 HOH HOH . E 5 HOH A 76 876 846 HOH HOH . E 5 HOH A 77 877 872 HOH HOH . E 5 HOH A 78 878 843 HOH HOH . E 5 HOH A 79 879 812 HOH HOH . E 5 HOH A 80 880 827 HOH HOH . E 5 HOH A 81 881 835 HOH HOH . E 5 HOH A 82 882 826 HOH HOH . E 5 HOH A 83 883 870 HOH HOH . F 5 HOH B 1 401 937 HOH HOH . F 5 HOH B 2 402 914 HOH HOH . F 5 HOH B 3 403 886 HOH HOH . F 5 HOH B 4 404 917 HOH HOH . F 5 HOH B 5 405 933 HOH HOH . F 5 HOH B 6 406 901 HOH HOH . F 5 HOH B 7 407 877 HOH HOH . F 5 HOH B 8 408 915 HOH HOH . F 5 HOH B 9 409 896 HOH HOH . F 5 HOH B 10 410 918 HOH HOH . F 5 HOH B 11 411 897 HOH HOH . F 5 HOH B 12 412 888 HOH HOH . F 5 HOH B 13 413 916 HOH HOH . F 5 HOH B 14 414 890 HOH HOH . F 5 HOH B 15 415 942 HOH HOH . F 5 HOH B 16 416 861 HOH HOH . F 5 HOH B 17 417 907 HOH HOH . F 5 HOH B 18 418 906 HOH HOH . F 5 HOH B 19 419 919 HOH HOH . F 5 HOH B 20 420 898 HOH HOH . F 5 HOH B 21 421 871 HOH HOH . F 5 HOH B 22 422 941 HOH HOH . F 5 HOH B 23 423 943 HOH HOH . F 5 HOH B 24 424 940 HOH HOH . F 5 HOH B 25 425 920 HOH HOH . F 5 HOH B 26 426 909 HOH HOH . F 5 HOH B 27 427 893 HOH HOH . F 5 HOH B 28 428 892 HOH HOH . F 5 HOH B 29 429 923 HOH HOH . F 5 HOH B 30 430 905 HOH HOH . F 5 HOH B 31 431 932 HOH HOH . F 5 HOH B 32 432 928 HOH HOH . F 5 HOH B 33 433 926 HOH HOH . F 5 HOH B 34 434 891 HOH HOH . F 5 HOH B 35 435 908 HOH HOH . F 5 HOH B 36 436 889 HOH HOH . F 5 HOH B 37 437 904 HOH HOH . F 5 HOH B 38 438 921 HOH HOH . F 5 HOH B 39 439 929 HOH HOH . F 5 HOH B 40 440 913 HOH HOH . F 5 HOH B 41 441 934 HOH HOH . F 5 HOH B 42 442 939 HOH HOH . F 5 HOH B 43 443 930 HOH HOH . F 5 HOH B 44 444 894 HOH HOH . F 5 HOH B 45 445 910 HOH HOH . F 5 HOH B 46 446 925 HOH HOH . F 5 HOH B 47 447 895 HOH HOH . F 5 HOH B 48 448 865 HOH HOH . F 5 HOH B 49 449 922 HOH HOH . F 5 HOH B 50 450 902 HOH HOH . F 5 HOH B 51 451 911 HOH HOH . F 5 HOH B 52 452 887 HOH HOH . F 5 HOH B 53 453 924 HOH HOH . F 5 HOH B 54 454 927 HOH HOH . G 5 HOH G 1 101 938 HOH HOH . G 5 HOH G 2 102 899 HOH HOH . G 5 HOH G 3 103 931 HOH HOH . G 5 HOH G 4 104 936 HOH HOH . G 5 HOH G 5 105 935 HOH HOH . G 5 HOH G 6 106 912 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C AFV . . . D 4 -16.441 26.218 15.94 1 72.62 ? C AFV 701 A 1 HETATM 2 N N AFV . . . D 4 -25.976 25.859 17.081 1 41.22 ? N AFV 701 A 1 HETATM 3 C C1 AFV . . . D 4 -17.788 26.512 15.284 1 68 ? C1 AFV 701 A 1 HETATM 4 O O1 AFV . . . D 4 -13.757 26.282 16.893 1 87.27 ? O1 AFV 701 A 1 HETATM 5 C C2 AFV . . . D 4 -18.504 27.544 15.682 1 66.77 ? C2 AFV 701 A 1 HETATM 6 O O AFV . . . D 4 -20.925 28.242 17.438 1 61.93 ? O AFV 701 A 1 HETATM 7 N N1 AFV . . . D 4 -25.759 24.764 17.844 1 51.07 ? N1 AFV 701 A 1 HETATM 8 N N2 AFV . . . D 4 -18.332 31.56 19.399 1 78.26 ? N2 AFV 701 A 1 HETATM 9 C C3 AFV . . . D 4 -17.987 28.449 16.797 1 73.67 ? C3 AFV 701 A 1 HETATM 10 N N3 AFV . . . D 4 -14.436 26.985 18.964 1 93.35 ? N3 AFV 701 A 1 HETATM 11 C C4 AFV . . . D 4 -18.814 29.652 17.262 1 66.41 ? C4 AFV 701 A 1 HETATM 12 N N4 AFV . . . D 4 -11.607 24.678 20.049 1 101.98 ? N4 AFV 701 A 1 HETATM 13 C C5 AFV . . . D 4 -19.242 29.409 18.706 1 69.46 ? C5 AFV 701 A 1 HETATM 14 C C6 AFV . . . D 4 -20.588 28.636 18.74 1 60.05 ? C6 AFV 701 A 1 HETATM 15 C C7 AFV . . . D 4 -22.217 27.721 17.298 1 54.11 ? C7 AFV 701 A 1 HETATM 16 C C8 AFV . . . D 4 -23.173 28.414 16.517 1 54.45 ? C8 AFV 701 A 1 HETATM 17 C C9 AFV . . . D 4 -24.458 27.893 16.371 1 49.77 ? C9 AFV 701 A 1 HETATM 18 C C10 AFV . . . D 4 -24.771 26.715 16.986 1 47.94 ? C10 AFV 701 A 1 HETATM 19 C C11 AFV . . . D 4 -24.563 24.91 18.188 1 45.8 ? C11 AFV 701 A 1 HETATM 20 C C12 AFV . . . D 4 -23.809 25.996 17.784 1 46.06 ? C12 AFV 701 A 1 HETATM 21 C C13 AFV . . . D 4 -22.542 26.509 17.927 1 49.87 ? C13 AFV 701 A 1 HETATM 22 C C14 AFV . . . D 4 -19.439 30.683 19.457 1 77.97 ? C14 AFV 701 A 1 HETATM 23 C C15 AFV . . . D 4 -18.268 32.107 18.06 1 76.18 ? C15 AFV 701 A 1 HETATM 24 C C16 AFV . . . D 4 -17.944 30.915 17.07 1 67.6 ? C16 AFV 701 A 1 HETATM 25 C C17 AFV . . . D 4 -16.823 28.197 17.363 1 79.3 ? C17 AFV 701 A 1 HETATM 26 C C18 AFV . . . D 4 -15.999 26.995 16.904 1 77.44 ? C18 AFV 701 A 1 HETATM 27 C C19 AFV . . . D 4 -14.643 26.714 17.552 1 85.06 ? C19 AFV 701 A 1 HETATM 28 C C20 AFV . . . D 4 -13.137 26.724 19.557 1 102.83 ? C20 AFV 701 A 1 HETATM 29 C C21 AFV . . . D 4 -12.967 25.236 19.836 1 99.41 ? C21 AFV 701 A 1 HETATM 30 C C22 AFV . . . D 4 -11.458 23.425 20.285 1 102.23 ? C22 AFV 701 A 1 HETATM 31 C C23 AFV . . . D 4 -12.676 22.514 20.347 1 97.53 ? C23 AFV 701 A 1 HETATM 32 C C24 AFV . . . D 4 -13.849 22.992 20.165 1 92.14 ? C24 AFV 701 A 1 HETATM 33 C C25 AFV . . . D 4 -14.022 24.45 19.89 1 95.54 ? C25 AFV 701 A 1 HETATM 34 F F AFV . . . D 4 -15.697 25.148 15.529 1 77.27 ? F AFV 701 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #