data_5WG9 # _model_server_result.job_id yCuXWIl6VvaMgdxrwA3wzQ _model_server_result.datetime_utc '2024-11-13 21:04:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5WG9 # _exptl.entry_id 5WG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.969 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{(2S)-1-[3-(2-chlorophenyl)propanoyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WG9 _cell.length_a 90.612 _cell.length_b 90.612 _cell.length_c 133.788 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc5 A OD1 ASP 120 A ASP 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc7 B MN MN . A MN 201 1_555 F O1 KU4 . A KU4 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc8 B MN MN . A MN 201 1_555 F O2 KU4 . A KU4 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc9 C MN MN . A MN 202 1_555 F O4 KU4 . A KU4 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc10 C MN MN . A MN 202 1_555 F O2 KU4 . A KU4 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc11 C MN MN . A MN 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc12 C MN MN . A MN 202 1_555 G O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'C26 H27 Cl N4 O5' _chem_comp.formula_weight 510.969 _chem_comp.id KU4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{(2S)-1-[3-(2-chlorophenyl)propanoyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 KU4 doub 173 n y C10 C11 KU4 sing 174 n y C9 C8 KU4 sing 175 n y C11 C12 KU4 doub 176 n y C8 C7 KU4 doub 177 n y C12 C7 KU4 sing 178 n y C7 O3 KU4 sing 179 n n O3 C6 KU4 sing 180 n n C6 C5 KU4 sing 181 n n C17 C16 KU4 sing 182 n n C17 C18 KU4 sing 183 n n CL1 C23 KU4 sing 184 n n O5 C15 KU4 doub 185 n n C16 C15 KU4 sing 186 n n C5 N1 KU4 sing 187 n n C18 C23 KU4 doub 188 n y C18 C19 KU4 sing 189 n y C15 N3 KU4 sing 190 n n C23 C22 KU4 sing 191 n y C19 C20 KU4 doub 192 n y N1 C4 KU4 sing 193 n n C22 C21 KU4 doub 194 n y N3 C24 KU4 sing 195 n n N3 C14 KU4 sing 196 n n C20 C21 KU4 sing 197 n y C4 O4 KU4 doub 198 n n C4 C3 KU4 sing 199 n n C24 C25 KU4 sing 200 n n N2 C3 KU4 sing 201 n n N2 C13 KU4 doub 202 n n C3 C2 KU4 doub 203 n n C14 C13 KU4 sing 204 n n C14 C26 KU4 sing 205 n n C13 N4 KU4 sing 206 n n C2 O2 KU4 sing 207 n n C2 C1 KU4 sing 208 n n N4 C1 KU4 sing 209 n n C25 C26 KU4 sing 210 n n C1 O1 KU4 doub 211 n n C10 H1 KU4 sing 212 n n C11 H2 KU4 sing 213 n n C12 H3 KU4 sing 214 n n C14 H4 KU4 sing 215 n n C16 H5 KU4 sing 216 n n C16 H6 KU4 sing 217 n n C17 H7 KU4 sing 218 n n C17 H8 KU4 sing 219 n n C19 H9 KU4 sing 220 n n C20 H10 KU4 sing 221 n n C21 H11 KU4 sing 222 n n C22 H12 KU4 sing 223 n n C24 H13 KU4 sing 224 n n C24 H14 KU4 sing 225 n n C25 H15 KU4 sing 226 n n C25 H16 KU4 sing 227 n n C26 H17 KU4 sing 228 n n C26 H18 KU4 sing 229 n n C5 H19 KU4 sing 230 n n C5 H20 KU4 sing 231 n n C6 H21 KU4 sing 232 n n C6 H22 KU4 sing 233 n n C8 H23 KU4 sing 234 n n C9 H24 KU4 sing 235 n n N1 H25 KU4 sing 236 n n N4 H26 KU4 sing 237 n n O2 H27 KU4 sing 238 n n # _atom_sites.entry_id 5WG9 _atom_sites.fract_transf_matrix[1][1] 0.011036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 2 MN A 1 202 2 MN MN . D 3 SO4 A 1 203 1 SO4 SO4 . E 3 SO4 A 1 204 2 SO4 SO4 . F 4 KU4 A 1 205 1 KU4 KU4 . G 5 HOH A 1 301 3 HOH HOH . G 5 HOH A 2 302 1 HOH HOH . G 5 HOH A 3 303 22 HOH HOH . G 5 HOH A 4 304 9 HOH HOH . G 5 HOH A 5 305 8 HOH HOH . G 5 HOH A 6 306 7 HOH HOH . G 5 HOH A 7 307 20 HOH HOH . G 5 HOH A 8 308 16 HOH HOH . G 5 HOH A 9 309 24 HOH HOH . G 5 HOH A 10 310 6 HOH HOH . G 5 HOH A 11 311 5 HOH HOH . G 5 HOH A 12 312 17 HOH HOH . G 5 HOH A 13 313 19 HOH HOH . G 5 HOH A 14 314 23 HOH HOH . G 5 HOH A 15 315 21 HOH HOH . G 5 HOH A 16 316 25 HOH HOH . G 5 HOH A 17 317 27 HOH HOH . G 5 HOH A 18 318 28 HOH HOH . G 5 HOH A 19 319 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KU4 . . . F 4 492.357 196.714 553.76 1 81.85 ? C1 KU4 205 A 1 HETATM 2 C C10 KU4 . . . F 4 493.724 194.227 544.443 1 104.06 ? C10 KU4 205 A 1 HETATM 3 C C11 KU4 . . . F 4 493.576 193.115 545.238 1 107.04 ? C11 KU4 205 A 1 HETATM 4 C C12 KU4 . . . F 4 494.233 193.024 546.455 1 106.04 ? C12 KU4 205 A 1 HETATM 5 C C13 KU4 . . . F 4 492.048 194.723 552.447 1 87.29 ? C13 KU4 205 A 1 HETATM 6 C C14 KU4 . . . F 4 491.234 193.509 552.044 1 88.69 ? C14 KU4 205 A 1 HETATM 7 C C15 KU4 . . . F 4 491.12 193.186 549.584 1 96.62 ? C15 KU4 205 A 1 HETATM 8 C C16 KU4 . . . F 4 489.848 193.995 549.565 1 98.29 ? C16 KU4 205 A 1 HETATM 9 C C17 KU4 . . . F 4 489.908 195.193 548.634 1 96.39 ? C17 KU4 205 A 1 HETATM 10 C C18 KU4 . . . F 4 491.098 196.086 548.883 1 95.91 ? C18 KU4 205 A 1 HETATM 11 C C19 KU4 . . . F 4 492.293 195.933 548.184 1 94.29 ? C19 KU4 205 A 1 HETATM 12 C C2 KU4 . . . F 4 493.595 196.856 553.137 1 80.72 ? C2 KU4 205 A 1 HETATM 13 C C20 KU4 . . . F 4 493.375 196.759 548.415 1 91.93 ? C20 KU4 205 A 1 HETATM 14 C C21 KU4 . . . F 4 493.288 197.76 549.354 1 90.97 ? C21 KU4 205 A 1 HETATM 15 C C22 KU4 . . . F 4 492.126 197.94 550.062 1 94.66 ? C22 KU4 205 A 1 HETATM 16 C C23 KU4 . . . F 4 491.045 197.109 549.824 1 98.91 ? C23 KU4 205 A 1 HETATM 17 C C24 KU4 . . . F 4 492.703 191.878 550.997 1 90.32 ? C24 KU4 205 A 1 HETATM 18 C C25 KU4 . . . F 4 492.825 191.821 552.509 1 89.67 ? C25 KU4 205 A 1 HETATM 19 C C26 KU4 . . . F 4 491.457 192.304 552.969 1 89.17 ? C26 KU4 205 A 1 HETATM 20 C C3 KU4 . . . F 4 494.002 195.938 552.215 1 81.83 ? C3 KU4 205 A 1 HETATM 21 C C4 KU4 . . . F 4 495.339 196.051 551.531 1 85.17 ? C4 KU4 205 A 1 HETATM 22 C C5 KU4 . . . F 4 496.847 194.981 549.915 1 91.48 ? C5 KU4 205 A 1 HETATM 23 C C6 KU4 . . . F 4 496.59 195.055 548.431 1 96.18 ? C6 KU4 205 A 1 HETATM 24 C C7 KU4 . . . F 4 495.047 194.067 546.87 1 103.58 ? C7 KU4 205 A 1 HETATM 25 C C8 KU4 . . . F 4 495.199 195.19 546.071 1 101.45 ? C8 KU4 205 A 1 HETATM 26 C C9 KU4 . . . F 4 494.532 195.259 544.858 1 101.22 ? C9 KU4 205 A 1 HETATM 27 N N1 KU4 . . . F 4 495.616 195.06 550.685 1 88.96 ? N1 KU4 205 A 1 HETATM 28 N N2 KU4 . . . F 4 493.243 194.886 551.875 1 83.4 ? N2 KU4 205 A 1 HETATM 29 N N3 KU4 . . . F 4 491.672 192.903 550.775 1 92.47 ? N3 KU4 205 A 1 HETATM 30 N N4 KU4 . . . F 4 491.602 195.618 553.39 1 86.42 ? N4 KU4 205 A 1 HETATM 31 O O1 KU4 . . . F 4 491.919 197.505 554.61 1 78.2 ? O1 KU4 205 A 1 HETATM 32 O O2 KU4 . . . F 4 494.326 197.917 553.508 1 76.7 ? O2 KU4 205 A 1 HETATM 33 O O3 KU4 . . . F 4 495.7 193.993 548.073 1 101.92 ? O3 KU4 205 A 1 HETATM 34 O O4 KU4 . . . F 4 496.101 196.987 551.766 1 84.4 ? O4 KU4 205 A 1 HETATM 35 O O5 KU4 . . . F 4 491.636 192.761 548.555 1 96.09 ? O5 KU4 205 A 1 HETATM 36 CL CL1 KU4 . . . F 4 489.583 197.373 550.743 1 107.64 ? CL1 KU4 205 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #