data_5WH8 # _model_server_result.job_id TU2lDkglOzgSis9tFlk7aQ _model_server_result.datetime_utc '2024-12-26 11:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5WH8 # _exptl.entry_id 5WH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WH8 _cell.length_a 49.21 _cell.length_b 75.5 _cell.length_c 88.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 25 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 72 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 316 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 363 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.078 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 120 n n C1 C2 EDO sing 121 n n C1 H11 EDO sing 122 n n C1 H12 EDO sing 123 n n O1 HO1 EDO sing 124 n n C2 O2 EDO sing 125 n n C2 H21 EDO sing 126 n n C2 H22 EDO sing 127 n n O2 HO2 EDO sing 128 n n # _atom_sites.entry_id 5WH8 _atom_sites.fract_transf_matrix[1][1] 0.020321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 2 EDO A 1 403 3 EDO EDO . E 2 EDO A 1 404 8 EDO EDO . F 2 EDO A 1 405 9 EDO EDO . G 2 EDO A 1 406 10 EDO EDO . H 2 EDO A 1 407 11 EDO EDO . I 2 EDO A 1 408 12 EDO EDO . J 2 EDO A 1 409 13 EDO EDO . K 2 EDO A 1 410 14 EDO EDO . L 2 EDO A 1 411 15 EDO EDO . M 2 EDO A 1 412 16 EDO EDO . N 2 EDO A 1 413 17 EDO EDO . O 3 1PE A 1 414 2 1PE 1PE . P 3 1PE A 1 415 3 1PE 1PE . Q 4 MES A 1 416 1 MES MES . R 5 HOH A 1 501 198 HOH HOH . R 5 HOH A 2 502 27 HOH HOH . R 5 HOH A 3 503 85 HOH HOH . R 5 HOH A 4 504 195 HOH HOH . R 5 HOH A 5 505 98 HOH HOH . R 5 HOH A 6 506 157 HOH HOH . R 5 HOH A 7 507 5 HOH HOH . R 5 HOH A 8 508 192 HOH HOH . R 5 HOH A 9 509 178 HOH HOH . R 5 HOH A 10 510 189 HOH HOH . R 5 HOH A 11 511 220 HOH HOH . R 5 HOH A 12 512 187 HOH HOH . R 5 HOH A 13 513 143 HOH HOH . R 5 HOH A 14 514 162 HOH HOH . R 5 HOH A 15 515 73 HOH HOH . R 5 HOH A 16 516 128 HOH HOH . R 5 HOH A 17 517 237 HOH HOH . R 5 HOH A 18 518 205 HOH HOH . R 5 HOH A 19 519 97 HOH HOH . R 5 HOH A 20 520 226 HOH HOH . R 5 HOH A 21 521 75 HOH HOH . R 5 HOH A 22 522 61 HOH HOH . R 5 HOH A 23 523 69 HOH HOH . R 5 HOH A 24 524 139 HOH HOH . R 5 HOH A 25 525 146 HOH HOH . R 5 HOH A 26 526 196 HOH HOH . R 5 HOH A 27 527 39 HOH HOH . R 5 HOH A 28 528 34 HOH HOH . R 5 HOH A 29 529 111 HOH HOH . R 5 HOH A 30 530 62 HOH HOH . R 5 HOH A 31 531 32 HOH HOH . R 5 HOH A 32 532 80 HOH HOH . R 5 HOH A 33 533 74 HOH HOH . R 5 HOH A 34 534 172 HOH HOH . R 5 HOH A 35 535 72 HOH HOH . R 5 HOH A 36 536 202 HOH HOH . R 5 HOH A 37 537 121 HOH HOH . R 5 HOH A 38 538 102 HOH HOH . R 5 HOH A 39 539 176 HOH HOH . R 5 HOH A 40 540 190 HOH HOH . R 5 HOH A 41 541 228 HOH HOH . R 5 HOH A 42 542 8 HOH HOH . R 5 HOH A 43 543 107 HOH HOH . R 5 HOH A 44 544 45 HOH HOH . R 5 HOH A 45 545 158 HOH HOH . R 5 HOH A 46 546 231 HOH HOH . R 5 HOH A 47 547 58 HOH HOH . R 5 HOH A 48 548 41 HOH HOH . R 5 HOH A 49 549 78 HOH HOH . R 5 HOH A 50 550 225 HOH HOH . R 5 HOH A 51 551 91 HOH HOH . R 5 HOH A 52 552 76 HOH HOH . R 5 HOH A 53 553 184 HOH HOH . R 5 HOH A 54 554 13 HOH HOH . R 5 HOH A 55 555 20 HOH HOH . R 5 HOH A 56 556 108 HOH HOH . R 5 HOH A 57 557 40 HOH HOH . R 5 HOH A 58 558 233 HOH HOH . R 5 HOH A 59 559 10 HOH HOH . R 5 HOH A 60 560 11 HOH HOH . R 5 HOH A 61 561 165 HOH HOH . R 5 HOH A 62 562 120 HOH HOH . R 5 HOH A 63 563 9 HOH HOH . R 5 HOH A 64 564 37 HOH HOH . R 5 HOH A 65 565 218 HOH HOH . R 5 HOH A 66 566 122 HOH HOH . R 5 HOH A 67 567 87 HOH HOH . R 5 HOH A 68 568 100 HOH HOH . R 5 HOH A 69 569 1 HOH HOH . R 5 HOH A 70 570 104 HOH HOH . R 5 HOH A 71 571 3 HOH HOH . R 5 HOH A 72 572 30 HOH HOH . R 5 HOH A 73 573 179 HOH HOH . R 5 HOH A 74 574 14 HOH HOH . R 5 HOH A 75 575 55 HOH HOH . R 5 HOH A 76 576 93 HOH HOH . R 5 HOH A 77 577 6 HOH HOH . R 5 HOH A 78 578 214 HOH HOH . R 5 HOH A 79 579 206 HOH HOH . R 5 HOH A 80 580 163 HOH HOH . R 5 HOH A 81 581 224 HOH HOH . R 5 HOH A 82 582 134 HOH HOH . R 5 HOH A 83 583 129 HOH HOH . R 5 HOH A 84 584 31 HOH HOH . R 5 HOH A 85 585 65 HOH HOH . R 5 HOH A 86 586 18 HOH HOH . R 5 HOH A 87 587 160 HOH HOH . R 5 HOH A 88 588 24 HOH HOH . R 5 HOH A 89 589 22 HOH HOH . R 5 HOH A 90 590 29 HOH HOH . R 5 HOH A 91 591 194 HOH HOH . R 5 HOH A 92 592 2 HOH HOH . R 5 HOH A 93 593 154 HOH HOH . R 5 HOH A 94 594 46 HOH HOH . R 5 HOH A 95 595 130 HOH HOH . R 5 HOH A 96 596 4 HOH HOH . R 5 HOH A 97 597 153 HOH HOH . R 5 HOH A 98 598 161 HOH HOH . R 5 HOH A 99 599 21 HOH HOH . R 5 HOH A 100 600 208 HOH HOH . R 5 HOH A 101 601 28 HOH HOH . R 5 HOH A 102 602 186 HOH HOH . R 5 HOH A 103 603 92 HOH HOH . R 5 HOH A 104 604 215 HOH HOH . R 5 HOH A 105 605 212 HOH HOH . R 5 HOH A 106 606 7 HOH HOH . R 5 HOH A 107 607 50 HOH HOH . R 5 HOH A 108 608 126 HOH HOH . R 5 HOH A 109 609 230 HOH HOH . R 5 HOH A 110 610 232 HOH HOH . R 5 HOH A 111 611 197 HOH HOH . R 5 HOH A 112 612 222 HOH HOH . R 5 HOH A 113 613 140 HOH HOH . R 5 HOH A 114 614 238 HOH HOH . R 5 HOH A 115 615 164 HOH HOH . R 5 HOH A 116 616 36 HOH HOH . R 5 HOH A 117 617 38 HOH HOH . R 5 HOH A 118 618 105 HOH HOH . R 5 HOH A 119 619 56 HOH HOH . R 5 HOH A 120 620 51 HOH HOH . R 5 HOH A 121 621 49 HOH HOH . R 5 HOH A 122 622 48 HOH HOH . R 5 HOH A 123 623 168 HOH HOH . R 5 HOH A 124 624 77 HOH HOH . R 5 HOH A 125 625 59 HOH HOH . R 5 HOH A 126 626 106 HOH HOH . R 5 HOH A 127 627 26 HOH HOH . R 5 HOH A 128 628 200 HOH HOH . R 5 HOH A 129 629 180 HOH HOH . R 5 HOH A 130 630 53 HOH HOH . R 5 HOH A 131 631 229 HOH HOH . R 5 HOH A 132 632 82 HOH HOH . R 5 HOH A 133 633 223 HOH HOH . R 5 HOH A 134 634 240 HOH HOH . R 5 HOH A 135 635 17 HOH HOH . R 5 HOH A 136 636 33 HOH HOH . R 5 HOH A 137 637 227 HOH HOH . R 5 HOH A 138 638 209 HOH HOH . R 5 HOH A 139 639 144 HOH HOH . R 5 HOH A 140 640 145 HOH HOH . R 5 HOH A 141 641 171 HOH HOH . R 5 HOH A 142 642 142 HOH HOH . R 5 HOH A 143 643 119 HOH HOH . R 5 HOH A 144 644 166 HOH HOH . R 5 HOH A 145 645 169 HOH HOH . R 5 HOH A 146 646 141 HOH HOH . R 5 HOH A 147 647 54 HOH HOH . R 5 HOH A 148 648 115 HOH HOH . R 5 HOH A 149 649 90 HOH HOH . R 5 HOH A 150 650 19 HOH HOH . R 5 HOH A 151 651 113 HOH HOH . R 5 HOH A 152 652 110 HOH HOH . R 5 HOH A 153 653 114 HOH HOH . R 5 HOH A 154 654 67 HOH HOH . R 5 HOH A 155 655 64 HOH HOH . R 5 HOH A 156 656 15 HOH HOH . R 5 HOH A 157 657 42 HOH HOH . R 5 HOH A 158 658 175 HOH HOH . R 5 HOH A 159 659 191 HOH HOH . R 5 HOH A 160 660 109 HOH HOH . R 5 HOH A 161 661 183 HOH HOH . R 5 HOH A 162 662 188 HOH HOH . R 5 HOH A 163 663 81 HOH HOH . R 5 HOH A 164 664 16 HOH HOH . R 5 HOH A 165 665 116 HOH HOH . R 5 HOH A 166 666 174 HOH HOH . R 5 HOH A 167 667 236 HOH HOH . R 5 HOH A 168 668 219 HOH HOH . R 5 HOH A 169 669 23 HOH HOH . R 5 HOH A 170 670 118 HOH HOH . R 5 HOH A 171 671 35 HOH HOH . R 5 HOH A 172 672 127 HOH HOH . R 5 HOH A 173 673 63 HOH HOH . R 5 HOH A 174 674 43 HOH HOH . R 5 HOH A 175 675 44 HOH HOH . R 5 HOH A 176 676 235 HOH HOH . R 5 HOH A 177 677 149 HOH HOH . R 5 HOH A 178 678 47 HOH HOH . R 5 HOH A 179 679 96 HOH HOH . R 5 HOH A 180 680 203 HOH HOH . R 5 HOH A 181 681 103 HOH HOH . R 5 HOH A 182 682 68 HOH HOH . R 5 HOH A 183 683 170 HOH HOH . R 5 HOH A 184 684 124 HOH HOH . R 5 HOH A 185 685 66 HOH HOH . R 5 HOH A 186 686 79 HOH HOH . R 5 HOH A 187 687 182 HOH HOH . R 5 HOH A 188 688 177 HOH HOH . R 5 HOH A 189 689 71 HOH HOH . R 5 HOH A 190 690 133 HOH HOH . R 5 HOH A 191 691 216 HOH HOH . R 5 HOH A 192 692 199 HOH HOH . R 5 HOH A 193 693 234 HOH HOH . R 5 HOH A 194 694 156 HOH HOH . R 5 HOH A 195 695 181 HOH HOH . R 5 HOH A 196 696 135 HOH HOH . R 5 HOH A 197 697 217 HOH HOH . R 5 HOH A 198 698 52 HOH HOH . R 5 HOH A 199 699 207 HOH HOH . R 5 HOH A 200 700 88 HOH HOH . R 5 HOH A 201 701 239 HOH HOH . R 5 HOH A 202 702 137 HOH HOH . R 5 HOH A 203 703 210 HOH HOH . R 5 HOH A 204 704 131 HOH HOH . R 5 HOH A 205 705 221 HOH HOH . R 5 HOH A 206 706 167 HOH HOH . R 5 HOH A 207 707 211 HOH HOH . R 5 HOH A 208 708 151 HOH HOH . R 5 HOH A 209 709 95 HOH HOH . R 5 HOH A 210 710 204 HOH HOH . R 5 HOH A 211 711 94 HOH HOH . R 5 HOH A 212 712 112 HOH HOH . R 5 HOH A 213 713 155 HOH HOH . R 5 HOH A 214 714 123 HOH HOH . R 5 HOH A 215 715 99 HOH HOH . R 5 HOH A 216 716 125 HOH HOH . R 5 HOH A 217 717 159 HOH HOH . R 5 HOH A 218 718 185 HOH HOH . R 5 HOH A 219 719 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 30.138 61.998 47.068 1 38 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 2 30.635 63.34 47.012 1 42.13 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 2 31.226 61.051 46.585 1 28.31 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 2 32.388 61.23 47.389 1 47.53 ? O2 EDO 404 A 1 HETATM 5 H H11 EDO . . . E 2 29.855 61.748 48.092 1 45.6 ? H11 EDO 404 A 1 HETATM 6 H H12 EDO . . . E 2 29.254 61.902 46.434 1 45.6 ? H12 EDO 404 A 1 HETATM 7 H HO1 EDO . . . E 2 29.95 63.95 47.318 1 50.55 ? HO1 EDO 404 A 1 HETATM 8 H H21 EDO . . . E 2 30.879 60.018 46.659 1 33.97 ? H21 EDO 404 A 1 HETATM 9 H H22 EDO . . . E 2 31.463 61.259 45.54 1 33.97 ? H22 EDO 404 A 1 HETATM 10 H HO2 EDO . . . E 2 33.084 60.631 47.087 1 57.03 ? HO2 EDO 404 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 688 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #