data_5WHF # _model_server_result.job_id d6Rg5n3HmrjhsXviJF6sBQ _model_server_result.datetime_utc '2024-12-21 14:03:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5whf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 5WHF # _exptl.entry_id 5WHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.03 _cell.angle_gamma 90 _cell.entry_id 5WHF _cell.length_a 39.99 _cell.length_b 77.27 _cell.length_c 123.39 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_456 x-1,y,z+1 1 0 0 0 1 0 0 0 1 -50.808507 0 122.914816 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5WHF _atom_sites.fract_transf_matrix[1][1] 0.025006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002201 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GOL G 1 301 1 GOL GOL . J 3 HOH A 1 301 62 HOH HOH . J 3 HOH A 2 302 85 HOH HOH . J 3 HOH A 3 303 152 HOH HOH . J 3 HOH A 4 304 71 HOH HOH . J 3 HOH A 5 305 70 HOH HOH . J 3 HOH A 6 306 8 HOH HOH . J 3 HOH A 7 307 170 HOH HOH . J 3 HOH A 8 308 67 HOH HOH . J 3 HOH A 9 309 114 HOH HOH . J 3 HOH A 10 310 54 HOH HOH . J 3 HOH A 11 311 76 HOH HOH . J 3 HOH A 12 312 111 HOH HOH . J 3 HOH A 13 313 189 HOH HOH . J 3 HOH A 14 314 99 HOH HOH . J 3 HOH A 15 315 192 HOH HOH . K 3 HOH B 1 301 172 HOH HOH . K 3 HOH B 2 302 150 HOH HOH . K 3 HOH B 3 303 187 HOH HOH . K 3 HOH B 4 304 20 HOH HOH . K 3 HOH B 5 305 160 HOH HOH . K 3 HOH B 6 306 84 HOH HOH . K 3 HOH B 7 307 83 HOH HOH . L 3 HOH C 1 301 119 HOH HOH . L 3 HOH C 2 302 142 HOH HOH . L 3 HOH C 3 303 19 HOH HOH . L 3 HOH C 4 304 4 HOH HOH . L 3 HOH C 5 305 135 HOH HOH . L 3 HOH C 6 306 41 HOH HOH . L 3 HOH C 7 307 17 HOH HOH . L 3 HOH C 8 308 63 HOH HOH . L 3 HOH C 9 309 89 HOH HOH . L 3 HOH C 10 310 124 HOH HOH . L 3 HOH C 11 311 98 HOH HOH . L 3 HOH C 12 312 205 HOH HOH . L 3 HOH C 13 313 65 HOH HOH . L 3 HOH C 14 314 115 HOH HOH . M 3 HOH D 1 301 196 HOH HOH . M 3 HOH D 2 302 134 HOH HOH . M 3 HOH D 3 303 32 HOH HOH . M 3 HOH D 4 304 149 HOH HOH . M 3 HOH D 5 305 2 HOH HOH . M 3 HOH D 6 306 108 HOH HOH . M 3 HOH D 7 307 3 HOH HOH . M 3 HOH D 8 308 50 HOH HOH . M 3 HOH D 9 309 123 HOH HOH . M 3 HOH D 10 310 78 HOH HOH . M 3 HOH D 11 311 136 HOH HOH . M 3 HOH D 12 312 66 HOH HOH . M 3 HOH D 13 313 181 HOH HOH . M 3 HOH D 14 314 59 HOH HOH . M 3 HOH D 15 315 79 HOH HOH . M 3 HOH D 16 316 15 HOH HOH . M 3 HOH D 17 317 77 HOH HOH . M 3 HOH D 18 318 174 HOH HOH . M 3 HOH D 19 319 157 HOH HOH . M 3 HOH D 20 320 145 HOH HOH . N 3 HOH E 1 301 82 HOH HOH . N 3 HOH E 2 302 64 HOH HOH . N 3 HOH E 3 303 57 HOH HOH . N 3 HOH E 4 304 203 HOH HOH . N 3 HOH E 5 305 161 HOH HOH . N 3 HOH E 6 306 197 HOH HOH . N 3 HOH E 7 307 164 HOH HOH . N 3 HOH E 8 308 156 HOH HOH . N 3 HOH E 9 309 14 HOH HOH . N 3 HOH E 10 310 10 HOH HOH . N 3 HOH E 11 311 23 HOH HOH . N 3 HOH E 12 312 186 HOH HOH . N 3 HOH E 13 313 35 HOH HOH . N 3 HOH E 14 314 132 HOH HOH . O 3 HOH F 1 301 61 HOH HOH . O 3 HOH F 2 302 46 HOH HOH . O 3 HOH F 3 303 200 HOH HOH . O 3 HOH F 4 304 33 HOH HOH . O 3 HOH F 5 305 53 HOH HOH . O 3 HOH F 6 306 104 HOH HOH . O 3 HOH F 7 307 95 HOH HOH . O 3 HOH F 8 308 38 HOH HOH . O 3 HOH F 9 309 105 HOH HOH . O 3 HOH F 10 310 75 HOH HOH . O 3 HOH F 11 311 48 HOH HOH . O 3 HOH F 12 312 52 HOH HOH . O 3 HOH F 13 313 81 HOH HOH . O 3 HOH F 14 314 110 HOH HOH . O 3 HOH F 15 315 168 HOH HOH . O 3 HOH F 16 316 166 HOH HOH . O 3 HOH F 17 317 147 HOH HOH . O 3 HOH F 18 318 118 HOH HOH . O 3 HOH F 19 319 31 HOH HOH . P 3 HOH G 1 401 146 HOH HOH . P 3 HOH G 2 402 87 HOH HOH . P 3 HOH G 3 403 1 HOH HOH . P 3 HOH G 4 404 167 HOH HOH . P 3 HOH G 5 405 131 HOH HOH . P 3 HOH G 6 406 121 HOH HOH . P 3 HOH G 7 407 13 HOH HOH . P 3 HOH G 8 408 58 HOH HOH . P 3 HOH G 9 409 183 HOH HOH . P 3 HOH G 10 410 56 HOH HOH . P 3 HOH G 11 411 60 HOH HOH . P 3 HOH G 12 412 201 HOH HOH . P 3 HOH G 13 413 6 HOH HOH . P 3 HOH G 14 414 16 HOH HOH . P 3 HOH G 15 415 128 HOH HOH . P 3 HOH G 16 416 207 HOH HOH . P 3 HOH G 17 417 39 HOH HOH . Q 3 HOH H 1 301 11 HOH HOH . Q 3 HOH H 2 302 22 HOH HOH . Q 3 HOH H 3 303 177 HOH HOH . Q 3 HOH H 4 304 204 HOH HOH . Q 3 HOH H 5 305 36 HOH HOH . Q 3 HOH H 6 306 86 HOH HOH . Q 3 HOH H 7 307 21 HOH HOH . Q 3 HOH H 8 308 193 HOH HOH . Q 3 HOH H 9 309 158 HOH HOH . Q 3 HOH H 10 310 80 HOH HOH . Q 3 HOH H 11 311 49 HOH HOH . Q 3 HOH H 12 312 175 HOH HOH . Q 3 HOH H 13 313 73 HOH HOH . Q 3 HOH H 14 314 94 HOH HOH . Q 3 HOH H 15 315 28 HOH HOH . Q 3 HOH H 16 316 144 HOH HOH . Q 3 HOH H 17 317 188 HOH HOH . Q 3 HOH H 18 318 91 HOH HOH . Q 3 HOH H 19 319 133 HOH HOH . Q 3 HOH H 20 320 191 HOH HOH . Q 3 HOH H 21 321 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 -14.209 -9.135 -22.668 1 54.05 ? C1 GOL 301 G 1 HETATM 2 O O1 GOL . . . I 2 -15.422 -8.643 -23.181 1 51.63 ? O1 GOL 301 G 1 HETATM 3 C C2 GOL . . . I 2 -14.487 -9.702 -21.28 1 55.13 ? C2 GOL 301 G 1 HETATM 4 O O2 GOL . . . I 2 -15.857 -10.065 -21.143 1 53.04 ? O2 GOL 301 G 1 HETATM 5 C C3 GOL . . . I 2 -13.5 -10.898 -21.115 1 47.87 ? C3 GOL 301 G 1 HETATM 6 O O3 GOL . . . I 2 -13.392 -11.155 -19.753 1 45.44 ? O3 GOL 301 G 1 HETATM 7 H H11 GOL . . . I 2 -13.818 -9.825 -23.226 1 65.11 ? H11 GOL 301 G 1 HETATM 8 H H12 GOL . . . I 2 -13.539 -8.435 -22.609 1 65.11 ? H12 GOL 301 G 1 HETATM 9 H HO1 GOL . . . I 2 -15.229 -8.218 -23.891 1 62.21 ? HO1 GOL 301 G 1 HETATM 10 H H2 GOL . . . I 2 -14.325 -9.029 -20.601 1 66.41 ? H2 GOL 301 G 1 HETATM 11 H HO2 GOL . . . I 2 -16.03 -10.657 -21.728 1 63.91 ? HO2 GOL 301 G 1 HETATM 12 H H31 GOL . . . I 2 -13.822 -11.653 -21.632 1 57.7 ? H31 GOL 301 G 1 HETATM 13 H H32 GOL . . . I 2 -12.644 -10.666 -21.508 1 57.7 ? H32 GOL 301 G 1 HETATM 14 H HO3 GOL . . . I 2 -13.849 -10.559 -19.355 1 54.79 ? HO3 GOL 301 G 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #